EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000018498 (Gene tree)
Gene ID
111225735
Gene Symbol
CPSF3 (1 of many)
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
6586 bases
Position
chrBDQW01000149.1:11113702-11120287
Accession
111225735
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000025527CPSF73-100_CPF11718.84.6e-5211
ENSSDUP00000025555CPSF73-100_CPF11718.87e-5211
ENSSDUP00000025555Beta-CaspPF10996.86.4e-3411
ENSSDUP00000025527Beta-CaspPF10996.87.1e-3411
ENSSDUP00000025527Lactamase_BPF00753.271.5e-1811
ENSSDUP00000025555Lactamase_BPF00753.273.6e-0811
ENSSDUP00000025555RMMBLPF07521.124.9e-2111
ENSSDUP00000025527RMMBLPF07521.125.6e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000026022CPSF3 (1 of many)-2021908-ENSSDUP00000025555635 (aa)--
ENSSDUT00000025994CPSF3 (1 of many)-2012922XM_022750756ENSSDUP00000025527690 (aa)XP_022606477UPI000BBF2F0E
Gene Model
Click here to download ENSSDUG00000018498's gene model file
Pathways
Pathway IDPathway NameSource
sdu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018498's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000018498CPSF39988.372ENSSDUG00000002828cpsf39788.372
ENSSDUG00000018498CPSF37436.053ENSSDUG00000003980ints118736.053
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000018498CPSF39888.088ENSG00000119203CPSF3100100.000Homo_sapiens
ENSSDUG00000018498CPSF37598.256ENSAPOG00000012241CPSF39298.256Acanthochromis_polyacanthus
ENSSDUG00000018498CPSF310087.971ENSAPOG00000022087cpsf310087.971Acanthochromis_polyacanthus
ENSSDUG00000018498CPSF39888.382ENSAMEG00000008493CPSF39988.382Ailuropoda_melanoleuca
ENSSDUG00000018498CPSF310096.232ENSACIG00000023663CPSF310096.232Amphilophus_citrinellus
ENSSDUG00000018498CPSF39986.120ENSACIG00000009846cpsf39986.120Amphilophus_citrinellus
ENSSDUG00000018498CPSF310087.826ENSAOCG00000022056cpsf39791.612Amphiprion_ocellaris
ENSSDUG00000018498CPSF310098.116ENSAOCG00000010077CPSF310098.116Amphiprion_ocellaris
ENSSDUG00000018498CPSF310087.971ENSAPEG00000019526cpsf39989.193Amphiprion_percula
ENSSDUG00000018498CPSF310098.116ENSAPEG00000021167CPSF310098.116Amphiprion_percula
ENSSDUG00000018498CPSF310090.725ENSATEG00000014525CPSF310090.725Anabas_testudineus
ENSSDUG00000018498CPSF39988.663ENSATEG00000003959cpsf39988.663Anabas_testudineus
ENSSDUG00000018498CPSF39985.714ENSAPLG00000006941CPSF39887.630Anas_platyrhynchos
ENSSDUG00000018498CPSF39983.861ENSACAG00000001759CPSF39985.512Anolis_carolinensis
ENSSDUG00000018498CPSF39882.794ENSANAG00000031254CPSF39983.208Aotus_nancymaae
ENSSDUG00000018498CPSF39986.888ENSACLG00000014484cpsf39988.404Astatotilapia_calliptera
ENSSDUG00000018498CPSF310096.860ENSACLG00000018846CPSF310096.860Astatotilapia_calliptera
ENSSDUG00000018498CPSF310089.275ENSAMXG00000004786cpsf310089.275Astyanax_mexicanus
ENSSDUG00000018498CPSF39888.382ENSBTAG00000019735CPSF39988.382Bos_taurus
ENSSDUG00000018498CPSF39057.571WBGene00013460cpsf-38957.571Caenorhabditis_elegans
ENSSDUG00000018498CPSF39887.941ENSCJAG00000006276CPSF39987.941Callithrix_jacchus
ENSSDUG00000018498CPSF39888.382ENSCAFG00000003375CPSF39588.382Canis_familiaris
ENSSDUG00000018498CPSF38990.909ENSCAFG00020026799CPSF39990.909Canis_lupus_dingo
ENSSDUG00000018498CPSF39888.382ENSCHIG00000013973CPSF39988.382Capra_hircus
ENSSDUG00000018498CPSF39888.088ENSTSYG00000002967CPSF39988.088Carlito_syrichta
ENSSDUG00000018498CPSF39986.190ENSCAPG00000013851CPSF39988.288Cavia_aperea
ENSSDUG00000018498CPSF39888.382ENSCPOG00000011299CPSF39988.382Cavia_porcellus
ENSSDUG00000018498CPSF39887.941ENSCCAG00000036730CPSF39987.941Cebus_capucinus
ENSSDUG00000018498CPSF39886.324ENSCATG00000014770CPSF39993.426Cercocebus_atys
ENSSDUG00000018498CPSF39888.235ENSCLAG00000002727CPSF39988.235Chinchilla_lanigera
ENSSDUG00000018498CPSF39880.147ENSCSAG00000007125CPSF39980.147Chlorocebus_sabaeus
ENSSDUG00000018498CPSF385100.000ENSCHOG00000000180CPSF38563.333Choloepus_hoffmanni
ENSSDUG00000018498CPSF39987.536ENSCPBG00000014074CPSF39987.536Chrysemys_picta_bellii
ENSSDUG00000018498CPSF39868.029ENSCING00000007214-9868.029Ciona_intestinalis
ENSSDUG00000018498CPSF39877.810ENSCANG00000034435CPSF39977.810Colobus_angolensis_palliatus
ENSSDUG00000018498CPSF39888.088ENSCGRG00001013134Cpsf39988.088Cricetulus_griseus_chok1gshd
ENSSDUG00000018498CPSF39888.088ENSCGRG00000018319Cpsf39988.088Cricetulus_griseus_crigri
ENSSDUG00000018498CPSF310094.211ENSCSEG00000002021CPSF310094.281Cynoglossus_semilaevis
ENSSDUG00000018498CPSF35074.051ENSCVAG00000022039-9474.051Cyprinodon_variegatus
ENSSDUG00000018498CPSF310095.942ENSCVAG00000015067CPSF310095.942Cyprinodon_variegatus
ENSSDUG00000018498CPSF310089.710ENSDARG00000027649cpsf310089.710Danio_rerio
ENSSDUG00000018498CPSF39887.372ENSDNOG00000008940CPSF39587.372Dasypus_novemcinctus
ENSSDUG00000018498CPSF39489.043ENSDORG00000014263Cpsf39989.043Dipodomys_ordii
ENSSDUG00000018498CPSF39866.814FBgn0261065Cpsf739866.814Drosophila_melanogaster
ENSSDUG00000018498CPSF39477.425ENSETEG00000003893CPSF39977.160Echinops_telfairi
ENSSDUG00000018498CPSF39976.056ENSEBUG00000009018cpsf39976.479Eptatretus_burgeri
ENSSDUG00000018498CPSF39888.382ENSEASG00005003970CPSF39988.382Equus_asinus_asinus
ENSSDUG00000018498CPSF39888.382ENSECAG00000019911CPSF39693.074Equus_caballus
ENSSDUG00000018498CPSF39872.941ENSEEUG00000015422CPSF39972.941Erinaceus_europaeus
ENSSDUG00000018498CPSF39990.843ENSELUG00000013775cpsf39990.843Esox_lucius
ENSSDUG00000018498CPSF39888.382ENSFCAG00000007852CPSF39988.382Felis_catus
ENSSDUG00000018498CPSF39985.397ENSFALG00000006572CPSF39987.461Ficedula_albicollis
ENSSDUG00000018498CPSF39887.629ENSFDAG00000006317CPSF39987.629Fukomys_damarensis
ENSSDUG00000018498CPSF36479.268ENSFHEG00000012186CPSF310079.756Fundulus_heteroclitus
ENSSDUG00000018498CPSF39986.773ENSFHEG00000014774cpsf39986.773Fundulus_heteroclitus
ENSSDUG00000018498CPSF310088.261ENSGMOG00000003157cpsf310088.261Gadus_morhua
ENSSDUG00000018498CPSF39986.919ENSGALG00000016424CPSF39986.919Gallus_gallus
ENSSDUG00000018498CPSF310095.072ENSGAFG00000008016CPSF310095.072Gambusia_affinis
ENSSDUG00000018498CPSF310085.669ENSGAFG00000019449cpsf310085.669Gambusia_affinis
ENSSDUG00000018498CPSF37383.761ENSGAGG00000025583CPSF39383.761Gopherus_agassizii
ENSSDUG00000018498CPSF39986.032ENSGGOG00000001757CPSF39198.065Gorilla_gorilla
ENSSDUG00000018498CPSF36493.812ENSHBUG00000014332CPSF310093.812Haplochromis_burtoni
ENSSDUG00000018498CPSF39988.081ENSHBUG00000001188cpsf39988.081Haplochromis_burtoni
ENSSDUG00000018498CPSF39887.776ENSHGLG00000000666CPSF39887.776Heterocephalus_glaber_female
ENSSDUG00000018498CPSF39887.776ENSHGLG00100007765CPSF39887.776Heterocephalus_glaber_male
ENSSDUG00000018498CPSF39994.340ENSHCOG00000015957CPSF39994.340Hippocampus_comes
ENSSDUG00000018498CPSF39987.083ENSHCOG00000007251cpsf39987.083Hippocampus_comes
ENSSDUG00000018498CPSF310089.565ENSIPUG00000023488cpsf310089.565Ictalurus_punctatus
ENSSDUG00000018498CPSF39888.235ENSSTOG00000004476CPSF39988.235Ictidomys_tridecemlineatus
ENSSDUG00000018498CPSF39887.647ENSJJAG00000023415Cpsf39987.647Jaculus_jaculus
ENSSDUG00000018498CPSF310086.667ENSKMAG00000002806cpsf310086.667Kryptolebias_marmoratus
ENSSDUG00000018498CPSF310096.957ENSKMAG00000007317CPSF310096.957Kryptolebias_marmoratus
ENSSDUG00000018498CPSF35882.210ENSLBEG00000015018-9982.527Labrus_bergylta
ENSSDUG00000018498CPSF39597.412ENSLBEG00000013492CPSF39997.412Labrus_bergylta
ENSSDUG00000018498CPSF39981.831ENSLBEG00000020569cpsf39681.831Labrus_bergylta
ENSSDUG00000018498CPSF310080.753ENSLACG00000008308CPSF310080.753Latimeria_chalumnae
ENSSDUG00000018498CPSF310089.899ENSLOCG00000016823cpsf310089.899Lepisosteus_oculatus
ENSSDUG00000018498CPSF39985.895ENSLAFG00000009467CPSF39986.892Loxodonta_africana
ENSSDUG00000018498CPSF39887.941ENSMFAG00000001339CPSF39495.208Macaca_fascicularis
ENSSDUG00000018498CPSF39985.873ENSMMUG00000018038CPSF39295.208Macaca_mulatta
ENSSDUG00000018498CPSF39993.000ENSMNEG00000039447CPSF39998.000Macaca_nemestrina
ENSSDUG00000018498CPSF39888.088ENSMLEG00000026825CPSF39297.854Mandrillus_leucophaeus
ENSSDUG00000018498CPSF310096.546ENSMAMG00000008835CPSF310096.546Mastacembelus_armatus
ENSSDUG00000018498CPSF39988.081ENSMAMG00000003076cpsf39988.081Mastacembelus_armatus
ENSSDUG00000018498CPSF310098.116ENSMZEG00005006258CPSF310098.116Maylandia_zebra
ENSSDUG00000018498CPSF39988.081ENSMZEG00005014358cpsf39988.081Maylandia_zebra
ENSSDUG00000018498CPSF39985.079ENSMGAG00000013995CPSF39987.237Meleagris_gallopavo
ENSSDUG00000018498CPSF35979.467ENSMAUG00000000166Cpsf39979.467Mesocricetus_auratus
ENSSDUG00000018498CPSF39883.211ENSMICG00000002363CPSF39983.211Microcebus_murinus
ENSSDUG00000018498CPSF39885.000ENSMOCG00000020067Cpsf39985.000Microtus_ochrogaster
ENSSDUG00000018498CPSF39981.978ENSMMOG00000018212CPSF39884.161Mola_mola
ENSSDUG00000018498CPSF37981.560ENSMMOG00000011923CPSF38581.560Mola_mola
ENSSDUG00000018498CPSF39887.045ENSMODG00000014703CPSF39987.045Monodelphis_domestica
ENSSDUG00000018498CPSF39692.508ENSMALG00000011474CPSF310090.952Monopterus_albus
ENSSDUG00000018498CPSF310088.406ENSMALG00000016416cpsf310088.406Monopterus_albus
ENSSDUG00000018498CPSF39887.794MGP_CAROLIEiJ_G0017640Cpsf39987.794Mus_caroli
ENSSDUG00000018498CPSF39887.794ENSMUSG00000054309Cpsf39698.305Mus_musculus
ENSSDUG00000018498CPSF39887.647MGP_PahariEiJ_G0029397Cpsf39987.647Mus_pahari
ENSSDUG00000018498CPSF39887.794MGP_SPRETEiJ_G0018481Cpsf39987.794Mus_spretus
ENSSDUG00000018498CPSF39888.365ENSMPUG00000013213CPSF39988.365Mustela_putorius_furo
ENSSDUG00000018498CPSF39888.253ENSMLUG00000010636CPSF39988.253Myotis_lucifugus
ENSSDUG00000018498CPSF39887.941ENSNGAG00000019836Cpsf39987.941Nannospalax_galili
ENSSDUG00000018498CPSF310096.860ENSNBRG00000010525CPSF310096.860Neolamprologus_brichardi
ENSSDUG00000018498CPSF39987.500ENSNBRG00000004770cpsf39987.500Neolamprologus_brichardi
ENSSDUG00000018498CPSF39887.941ENSNLEG00000013359CPSF39198.065Nomascus_leucogenys
ENSSDUG00000018498CPSF39857.206ENSMEUG00000013117-9957.206Notamacropus_eugenii
ENSSDUG00000018498CPSF39879.529ENSOPRG00000008902CPSF39979.529Ochotona_princeps
ENSSDUG00000018498CPSF39888.382ENSODEG00000003129CPSF39988.382Octodon_degus
ENSSDUG00000018498CPSF39988.663ENSONIG00000018812cpsf39988.663Oreochromis_niloticus
ENSSDUG00000018498CPSF38886.348ENSOANG00000008577CPSF39986.348Ornithorhynchus_anatinus
ENSSDUG00000018498CPSF39888.088ENSOCUG00000003728CPSF39988.088Oryctolagus_cuniculus
ENSSDUG00000018498CPSF39986.483ENSORLG00000018854cpsf39986.483Oryzias_latipes
ENSSDUG00000018498CPSF39986.337ENSORLG00020013331cpsf39986.337Oryzias_latipes_hni
ENSSDUG00000018498CPSF39986.483ENSORLG00015011017cpsf39986.483Oryzias_latipes_hsok
ENSSDUG00000018498CPSF39986.773ENSOMEG00000010647cpsf39586.773Oryzias_melastigma
ENSSDUG00000018498CPSF39877.941ENSOGAG00000001680CPSF39977.941Otolemur_garnettii
ENSSDUG00000018498CPSF39888.382ENSOARG00000015073CPSF39988.382Ovis_aries
ENSSDUG00000018498CPSF39888.088ENSPPAG00000042457CPSF39198.065Pan_paniscus
ENSSDUG00000018498CPSF39888.382ENSPPRG00000016790CPSF39988.382Panthera_pardus
ENSSDUG00000018498CPSF39888.513ENSPTIG00000003920CPSF39988.513Panthera_tigris_altaica
ENSSDUG00000018498CPSF39888.088ENSPTRG00000011638CPSF39198.065Pan_troglodytes
ENSSDUG00000018498CPSF39887.941ENSPANG00000016798CPSF39495.208Papio_anubis
ENSSDUG00000018498CPSF310090.725ENSPKIG00000023646cpsf310090.725Paramormyrops_kingsleyae
ENSSDUG00000018498CPSF39886.931ENSPSIG00000016144CPSF39986.931Pelodiscus_sinensis
ENSSDUG00000018498CPSF39088.656ENSPMGG00000006141-9988.656Periophthalmus_magnuspinnatus
ENSSDUG00000018498CPSF36490.099ENSPMGG00000015311CPSF310090.099Periophthalmus_magnuspinnatus
ENSSDUG00000018498CPSF39888.382ENSPEMG00000017668Cpsf39988.382Peromyscus_maniculatus_bairdii
ENSSDUG00000018498CPSF37989.358ENSPMAG00000004841cpsf310089.358Petromyzon_marinus
ENSSDUG00000018498CPSF39985.873ENSPCIG00000009823CPSF39888.344Phascolarctos_cinereus
ENSSDUG00000018498CPSF310094.638ENSPFOG00000010418-10094.638Poecilia_formosa
ENSSDUG00000018498CPSF310086.377ENSPFOG00000015922cpsf310086.377Poecilia_formosa
ENSSDUG00000018498CPSF36491.358ENSPLAG00000021300-10092.593Poecilia_latipinna
ENSSDUG00000018498CPSF310086.377ENSPLAG00000000882cpsf310086.377Poecilia_latipinna
ENSSDUG00000018498CPSF310086.522ENSPMEG00000018309cpsf310086.522Poecilia_mexicana
ENSSDUG00000018498CPSF310085.669ENSPREG00000014875cpsf310085.669Poecilia_reticulata
ENSSDUG00000018498CPSF310087.681ENSPREG00000004482CPSF310087.681Poecilia_reticulata
ENSSDUG00000018498CPSF39883.824ENSPPYG00000012666CPSF39983.824Pongo_abelii
ENSSDUG00000018498CPSF38465.725ENSPCAG00000015042CPSF38965.725Procavia_capensis
ENSSDUG00000018498CPSF38690.323ENSPCOG00000023016CPSF39790.323Propithecus_coquereli
ENSSDUG00000018498CPSF39888.218ENSPVAG00000005324CPSF39988.218Pteropus_vampyrus
ENSSDUG00000018498CPSF38798.548ENSPNYG00000021047CPSF39298.548Pundamilia_nyererei
ENSSDUG00000018498CPSF39988.081ENSPNYG00000004405cpsf39988.081Pundamilia_nyererei
ENSSDUG00000018498CPSF310089.275ENSPNAG00000023060cpsf310089.275Pygocentrus_nattereri
ENSSDUG00000018498CPSF39987.518ENSRNOG00000052418Cpsf39987.518Rattus_norvegicus
ENSSDUG00000018498CPSF39982.540ENSRBIG00000041615CPSF39984.056Rhinopithecus_bieti
ENSSDUG00000018498CPSF39888.088ENSRROG00000033792CPSF39988.088Rhinopithecus_roxellana
ENSSDUG00000018498CPSF38443.182YLR277CYSH18543.182Saccharomyces_cerevisiae
ENSSDUG00000018498CPSF39982.334ENSSBOG00000027263CPSF39784.328Saimiri_boliviensis_boliviensis
ENSSDUG00000018498CPSF39887.941ENSSHAG00000007024CPSF39987.941Sarcophilus_harrisii
ENSSDUG00000018498CPSF310090.870ENSSFOG00015002108cpsf310090.870Scleropages_formosus
ENSSDUG00000018498CPSF39594.697ENSSMAG00000020534CPSF39794.697Scophthalmus_maximus
ENSSDUG00000018498CPSF310088.261ENSSLDG00000008469cpsf39789.030Seriola_lalandi_dorsalis
ENSSDUG00000018498CPSF3100100.000ENSSLDG00000005234CPSF3100100.000Seriola_lalandi_dorsalis
ENSSDUG00000018498CPSF38983.992ENSSARG00000005186CPSF39083.992Sorex_araneus
ENSSDUG00000018498CPSF39983.438ENSSPUG00000015525CPSF39785.672Sphenodon_punctatus
ENSSDUG00000018498CPSF310088.261ENSSPAG00000018579cpsf310088.261Stegastes_partitus
ENSSDUG00000018498CPSF310097.681ENSSPAG00000002906CPSF310097.681Stegastes_partitus
ENSSDUG00000018498CPSF39888.382ENSSSCG00000020799CPSF39988.382Sus_scrofa
ENSSDUG00000018498CPSF39987.555ENSTGUG00000013016CPSF39987.555Taeniopygia_guttata
ENSSDUG00000018498CPSF39987.936ENSTRUG00000007030cpsf39887.936Takifugu_rubripes
ENSSDUG00000018498CPSF36480.000ENSTRUG00000013905CPSF310080.000Takifugu_rubripes
ENSSDUG00000018498CPSF38491.989ENSTBEG00000002707CPSF38491.989Tupaia_belangeri
ENSSDUG00000018498CPSF38674.939ENSTTRG00000000861CPSF38774.939Tursiops_truncatus
ENSSDUG00000018498CPSF39589.024ENSUAMG00000007535CPSF39489.024Ursus_americanus
ENSSDUG00000018498CPSF39986.349ENSUMAG00000003676CPSF39987.926Ursus_maritimus
ENSSDUG00000018498CPSF39288.170ENSVPAG00000008041CPSF310088.170Vicugna_pacos
ENSSDUG00000018498CPSF39888.382ENSVVUG00000002194CPSF39988.382Vulpes_vulpes
ENSSDUG00000018498CPSF39985.922ENSXETG00000008263cpsf39985.922Xenopus_tropicalis
ENSSDUG00000018498CPSF35890.054ENSXCOG00000000957-8791.667Xiphophorus_couchianus
ENSSDUG00000018498CPSF310086.667ENSXCOG00000019695cpsf310086.667Xiphophorus_couchianus
ENSSDUG00000018498CPSF310094.928ENSXMAG00000027291CPSF310094.928Xiphophorus_maculatus
ENSSDUG00000018498CPSF310086.522ENSXMAG00000009784cpsf310086.522Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us