EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000018533 (Gene tree)
Gene ID: 111229493
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3567 bases
Position: chrBDQW01000017.1:3835621-3839187
Accession: 111229493
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000025542	TUDOR	PF00567.24	5.6e-07	1	1
ENSSDUP00000025559	TUDOR	PF00567.24	6.3e-07	1	1
ENSSDUP00000025542	SMN	PF06003.12	1.6e-111	1	1
ENSSDUP00000025559	SMN	PF06003.12	2.2e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000026026	-	894	-	ENSSDUP00000025559	297 (aa)	-	-
ENSSDUT00000026009	-	1097	XM_022755830	ENSSDUP00000025542	284 (aa)	XP_022611551	UPI000BBF1523

Gene Model

Click here to download ENSSDUG00000018533's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018533's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000018533	smn1	94	52.330	ENSG00000205571	SMN2	92	51.825	Homo_sapiens
ENSSDUG00000018533	smn1	94	52.330	ENSG00000172062	SMN1	92	51.825	Homo_sapiens
ENSSDUG00000018533	smn1	100	85.915	ENSAPOG00000011324	smn1	100	88.028	Acanthochromis_polyacanthus
ENSSDUG00000018533	smn1	94	53.430	ENSAMEG00000003316	-	89	52.158	Ailuropoda_melanoleuca
ENSSDUG00000018533	smn1	93	81.818	ENSACIG00000019772	-	99	81.818	Amphilophus_citrinellus
ENSSDUG00000018533	smn1	60	82.941	ENSACIG00000007598	smn1	94	84.431	Amphilophus_citrinellus
ENSSDUG00000018533	smn1	100	85.915	ENSAOCG00000024444	smn1	100	87.676	Amphiprion_ocellaris
ENSSDUG00000018533	smn1	100	86.268	ENSAPEG00000016504	smn1	100	88.028	Amphiprion_percula
ENSSDUG00000018533	smn1	95	89.259	ENSATEG00000002182	smn1	82	89.259	Anabas_testudineus
ENSSDUG00000018533	smn1	69	51.707	ENSAPLG00000010912	-	96	44.444	Anas_platyrhynchos
ENSSDUG00000018533	smn1	98	52.098	ENSACAG00000010017	-	96	51.568	Anolis_carolinensis
ENSSDUG00000018533	smn1	96	51.379	ENSANAG00000032133	-	95	48.432	Aotus_nancymaae
ENSSDUG00000018533	smn1	99	82.857	ENSACLG00000007308	smn1	94	82.857	Astatotilapia_calliptera
ENSSDUG00000018533	smn1	100	65.385	ENSAMXG00000013884	smn1	100	67.368	Astyanax_mexicanus
ENSSDUG00000018533	smn1	94	52.941	ENSBTAG00000005743	SMN2	93	50.903	Bos_taurus
ENSSDUG00000018533	smn1	94	51.971	ENSCJAG00000016290	-	92	52.747	Callithrix_jacchus
ENSSDUG00000018533	smn1	94	50.714	ENSCAFG00000007812	SMN	93	51.079	Canis_familiaris
ENSSDUG00000018533	smn1	94	50.714	ENSCAFG00020019229	-	86	51.079	Canis_lupus_dingo
ENSSDUG00000018533	smn1	94	53.676	ENSCHIG00000015559	-	91	51.264	Capra_hircus
ENSSDUG00000018533	smn1	94	53.623	ENSTSYG00000012058	-	93	52.899	Carlito_syrichta
ENSSDUG00000018533	smn1	77	41.850	ENSCAPG00000011021	-	98	35.319	Cavia_aperea
ENSSDUG00000018533	smn1	94	49.291	ENSCPOG00000012328	-	93	50.883	Cavia_porcellus
ENSSDUG00000018533	smn1	94	50.181	ENSCPOG00000036973	-	92	51.957	Cavia_porcellus
ENSSDUG00000018533	smn1	94	49.265	ENSCCAG00000018127	-	91	49.097	Cebus_capucinus
ENSSDUG00000018533	smn1	94	52.688	ENSCATG00000037002	-	92	52.190	Cercocebus_atys
ENSSDUG00000018533	smn1	94	51.254	ENSCLAG00000000284	-	92	48.763	Chinchilla_lanigera
ENSSDUG00000018533	smn1	94	52.688	ENSCSAG00000015688	-	91	52.297	Chlorocebus_sabaeus
ENSSDUG00000018533	smn1	62	80.000	ENSCHOG00000007346	-	100	45.769	Choloepus_hoffmanni
ENSSDUG00000018533	smn1	96	50.000	ENSCPBG00000010968	-	97	50.187	Chrysemys_picta_bellii
ENSSDUG00000018533	smn1	97	47.552	ENSCANG00000033324	-	94	48.252	Colobus_angolensis_palliatus
ENSSDUG00000018533	smn1	94	53.261	ENSCANG00000038242	-	93	52.941	Colobus_angolensis_palliatus
ENSSDUG00000018533	smn1	94	40.511	ENSCGRG00001016998	-	91	38.235	Cricetulus_griseus_chok1gshd
ENSSDUG00000018533	smn1	94	52.222	ENSCGRG00001017959	-	93	51.825	Cricetulus_griseus_chok1gshd
ENSSDUG00000018533	smn1	94	52.222	ENSCGRG00000007698	Smn1	93	51.825	Cricetulus_griseus_crigri
ENSSDUG00000018533	smn1	98	70.732	ENSCSEG00000015227	smn1	100	71.080	Cynoglossus_semilaevis
ENSSDUG00000018533	smn1	100	83.099	ENSCVAG00000007498	smn1	100	83.099	Cyprinodon_variegatus
ENSSDUG00000018533	smn1	100	65.505	ENSDARG00000018494	smn1	100	59.862	Danio_rerio
ENSSDUG00000018533	smn1	82	42.128	ENSDNOG00000045949	-	76	49.171	Dasypus_novemcinctus
ENSSDUG00000018533	smn1	82	45.643	ENSDNOG00000007283	-	97	46.502	Dasypus_novemcinctus
ENSSDUG00000018533	smn1	94	42.960	ENSDORG00000007082	Smn1	90	42.910	Dipodomys_ordii
ENSSDUG00000018533	smn1	58	46.108	ENSETEG00000001406	-	89	44.444	Echinops_telfairi
ENSSDUG00000018533	smn1	89	47.126	ENSEASG00005018000	-	89	47.328	Equus_asinus_asinus
ENSSDUG00000018533	smn1	94	51.812	ENSECAG00000015215	-	93	51.799	Equus_caballus
ENSSDUG00000018533	smn1	88	52.107	ENSEEUG00000015777	-	100	49.609	Erinaceus_europaeus
ENSSDUG00000018533	smn1	100	68.662	ENSELUG00000018067	smn1	100	68.662	Esox_lucius
ENSSDUG00000018533	smn1	94	53.069	ENSFCAG00000028292	SMN	93	52.518	Felis_catus
ENSSDUG00000018533	smn1	95	55.435	ENSFALG00000012320	-	95	50.357	Ficedula_albicollis
ENSSDUG00000018533	smn1	94	46.975	ENSFDAG00000017683	-	92	47.887	Fukomys_damarensis
ENSSDUG00000018533	smn1	97	84.477	ENSFHEG00000018508	smn1	100	83.755	Fundulus_heteroclitus
ENSSDUG00000018533	smn1	100	67.606	ENSGMOG00000017279	smn1	98	66.197	Gadus_morhua
ENSSDUG00000018533	smn1	95	51.613	ENSGALG00000002430	SMN	96	50.549	Gallus_gallus
ENSSDUG00000018533	smn1	100	85.915	ENSGAFG00000009501	smn1	100	85.915	Gambusia_affinis
ENSSDUG00000018533	smn1	100	83.803	ENSGACG00000010584	smn1	97	82.042	Gasterosteus_aculeatus
ENSSDUG00000018533	smn1	98	36.567	ENSGAGG00000013639	-	92	36.567	Gopherus_agassizii
ENSSDUG00000018533	smn1	96	51.971	ENSGAGG00000011374	-	95	49.291	Gopherus_agassizii
ENSSDUG00000018533	smn1	91	50.000	ENSGGOG00000003872	-	93	48.289	Gorilla_gorilla
ENSSDUG00000018533	smn1	54	60.759	ENSGGOG00000026704	-	85	55.556	Gorilla_gorilla
ENSSDUG00000018533	smn1	100	86.268	ENSHBUG00000013987	smn1	100	86.268	Haplochromis_burtoni
ENSSDUG00000018533	smn1	94	49.462	ENSHGLG00000001018	-	92	47.518	Heterocephalus_glaber_female
ENSSDUG00000018533	smn1	94	46.350	ENSHGLG00000001905	-	94	47.183	Heterocephalus_glaber_female
ENSSDUG00000018533	smn1	92	46.269	ENSHGLG00100018676	-	96	47.122	Heterocephalus_glaber_male
ENSSDUG00000018533	smn1	94	49.462	ENSHGLG00100011252	-	92	47.518	Heterocephalus_glaber_male
ENSSDUG00000018533	smn1	94	79.699	ENSHCOG00000017136	smn1	89	77.444	Hippocampus_comes
ENSSDUG00000018533	smn1	100	66.899	ENSIPUG00000012580	smn1	89	66.899	Ictalurus_punctatus
ENSSDUG00000018533	smn1	91	50.379	ENSSTOG00000012288	-	93	50.752	Ictidomys_tridecemlineatus
ENSSDUG00000018533	smn1	50	50.350	ENSJJAG00000014853	-	92	44.633	Jaculus_jaculus
ENSSDUG00000018533	smn1	100	83.624	ENSKMAG00000007239	smn1	100	83.624	Kryptolebias_marmoratus
ENSSDUG00000018533	smn1	100	86.268	ENSLBEG00000022550	smn1	100	86.268	Labrus_bergylta
ENSSDUG00000018533	smn1	99	32.895	ENSLACG00000009808	-	95	33.784	Latimeria_chalumnae
ENSSDUG00000018533	smn1	100	54.027	ENSLOCG00000011339	smn1	100	58.621	Lepisosteus_oculatus
ENSSDUG00000018533	smn1	94	52.015	ENSLAFG00000003425	-	89	52.128	Loxodonta_africana
ENSSDUG00000018533	smn1	94	49.821	ENSMFAG00000008812	-	91	49.281	Macaca_fascicularis
ENSSDUG00000018533	smn1	94	53.047	ENSMFAG00000031523	SMN1	95	51.087	Macaca_fascicularis
ENSSDUG00000018533	smn1	94	49.104	ENSMMUG00000030594	-	91	47.183	Macaca_mulatta
ENSSDUG00000018533	smn1	94	53.047	ENSMMUG00000020214	SMN1	92	52.920	Macaca_mulatta
ENSSDUG00000018533	smn1	94	53.047	ENSMNEG00000035094	-	92	52.920	Macaca_nemestrina
ENSSDUG00000018533	smn1	76	41.048	ENSMNEG00000036423	-	81	40.092	Macaca_nemestrina
ENSSDUG00000018533	smn1	94	53.405	ENSMLEG00000041902	-	93	52.920	Mandrillus_leucophaeus
ENSSDUG00000018533	smn1	100	88.380	ENSMAMG00000011034	smn1	100	88.380	Mastacembelus_armatus
ENSSDUG00000018533	smn1	100	86.620	ENSMZEG00005013634	smn1	100	86.620	Maylandia_zebra
ENSSDUG00000018533	smn1	69	48.756	ENSMGAG00000008889	-	94	41.327	Meleagris_gallopavo
ENSSDUG00000018533	smn1	94	52.222	ENSMAUG00000010262	Smn1	93	51.095	Mesocricetus_auratus
ENSSDUG00000018533	smn1	58	55.556	ENSMICG00000034708	-	82	53.846	Microcebus_murinus
ENSSDUG00000018533	smn1	94	52.963	ENSMOCG00000017833	Smn1	93	52.768	Microtus_ochrogaster
ENSSDUG00000018533	smn1	96	74.453	ENSMMOG00000005504	smn1	99	73.929	Mola_mola
ENSSDUG00000018533	smn1	96	54.737	ENSMODG00000001436	-	95	48.097	Monodelphis_domestica
ENSSDUG00000018533	smn1	100	88.732	ENSMALG00000008025	smn1	100	88.732	Monopterus_albus
ENSSDUG00000018533	smn1	94	51.986	MGP_CAROLIEiJ_G0018836	Smn1	93	51.661	Mus_caroli
ENSSDUG00000018533	smn1	94	51.625	ENSMUSG00000021645	Smn1	93	51.292	Mus_musculus
ENSSDUG00000018533	smn1	94	52.593	MGP_PahariEiJ_G0015911	Smn1	93	50.923	Mus_pahari
ENSSDUG00000018533	smn1	94	51.625	MGP_SPRETEiJ_G0019718	Smn1	93	51.292	Mus_spretus
ENSSDUG00000018533	smn1	92	53.309	ENSMPUG00000014470	-	93	52.015	Mustela_putorius_furo
ENSSDUG00000018533	smn1	94	50.352	ENSMLUG00000010603	-	89	51.408	Myotis_lucifugus
ENSSDUG00000018533	smn1	94	52.920	ENSNGAG00000019833	Smn1	93	51.460	Nannospalax_galili
ENSSDUG00000018533	smn1	100	88.028	ENSNBRG00000023000	smn1	100	88.028	Neolamprologus_brichardi
ENSSDUG00000018533	smn1	94	52.688	ENSNLEG00000004454	-	92	52.190	Nomascus_leucogenys
ENSSDUG00000018533	smn1	67	48.768	ENSMEUG00000011393	-	100	46.581	Notamacropus_eugenii
ENSSDUG00000018533	smn1	88	51.527	ENSOPRG00000002015	-	100	50.000	Ochotona_princeps
ENSSDUG00000018533	smn1	91	51.880	ENSODEG00000015976	-	91	52.190	Octodon_degus
ENSSDUG00000018533	smn1	100	88.028	ENSONIG00000011799	smn1	100	88.028	Oreochromis_niloticus
ENSSDUG00000018533	smn1	94	48.582	ENSOANG00000001626	-	95	47.535	Ornithorhynchus_anatinus
ENSSDUG00000018533	smn1	94	50.000	ENSOCUG00000017097	-	92	49.477	Oryctolagus_cuniculus
ENSSDUG00000018533	smn1	94	43.310	ENSOCUG00000025183	-	92	44.211	Oryctolagus_cuniculus
ENSSDUG00000018533	smn1	94	49.827	ENSOCUG00000026649	-	92	50.000	Oryctolagus_cuniculus
ENSSDUG00000018533	smn1	100	81.338	ENSORLG00000010552	smn1	100	81.338	Oryzias_latipes
ENSSDUG00000018533	smn1	100	75.439	ENSORLG00020007936	smn1	100	74.035	Oryzias_latipes_hni
ENSSDUG00000018533	smn1	100	80.986	ENSORLG00015022425	smn1	100	80.986	Oryzias_latipes_hsok
ENSSDUG00000018533	smn1	100	81.690	ENSOMEG00000007824	smn1	100	81.690	Oryzias_melastigma
ENSSDUG00000018533	smn1	91	48.134	ENSOGAG00000031414	-	92	47.601	Otolemur_garnettii
ENSSDUG00000018533	smn1	94	51.838	ENSOARG00000005425	-	98	49.097	Ovis_aries
ENSSDUG00000018533	smn1	94	52.330	ENSPPAG00000036640	-	92	51.825	Pan_paniscus
ENSSDUG00000018533	smn1	94	53.069	ENSPPRG00000005575	-	93	52.518	Panthera_pardus
ENSSDUG00000018533	smn1	94	53.405	ENSPTIG00000007745	-	93	52.518	Panthera_tigris_altaica
ENSSDUG00000018533	smn1	94	51.773	ENSPTRG00000016955	-	92	51.866	Pan_troglodytes
ENSSDUG00000018533	smn1	94	49.821	ENSPANG00000000253	-	91	49.640	Papio_anubis
ENSSDUG00000018533	smn1	94	53.047	ENSPANG00000013601	-	91	52.650	Papio_anubis
ENSSDUG00000018533	smn1	100	60.839	ENSPKIG00000011096	smn1	100	58.537	Paramormyrops_kingsleyae
ENSSDUG00000018533	smn1	92	50.725	ENSPSIG00000014787	-	83	49.064	Pelodiscus_sinensis
ENSSDUG00000018533	smn1	100	75.261	ENSPMGG00000012285	smn1	97	72.143	Periophthalmus_magnuspinnatus
ENSSDUG00000018533	smn1	92	40.146	ENSPMAG00000005004	smn1	91	34.737	Petromyzon_marinus
ENSSDUG00000018533	smn1	96	54.035	ENSPCIG00000025764	-	97	47.405	Phascolarctos_cinereus
ENSSDUG00000018533	smn1	100	85.563	ENSPFOG00000007786	smn1	100	85.563	Poecilia_formosa
ENSSDUG00000018533	smn1	100	85.915	ENSPLAG00000012071	smn1	100	85.915	Poecilia_latipinna
ENSSDUG00000018533	smn1	100	85.563	ENSPMEG00000017085	smn1	100	85.563	Poecilia_mexicana
ENSSDUG00000018533	smn1	100	85.563	ENSPREG00000005824	smn1	100	85.563	Poecilia_reticulata
ENSSDUG00000018533	smn1	92	50.735	ENSPPYG00000015533	-	95	50.000	Pongo_abelii
ENSSDUG00000018533	smn1	83	35.628	ENSPPYG00000019189	-	99	34.800	Pongo_abelii
ENSSDUG00000018533	smn1	91	50.190	ENSPCAG00000004187	-	98	48.889	Procavia_capensis
ENSSDUG00000018533	smn1	63	51.685	ENSPCOG00000022307	-	75	53.614	Propithecus_coquereli
ENSSDUG00000018533	smn1	94	53.261	ENSPVAG00000005977	-	92	52.518	Pteropus_vampyrus
ENSSDUG00000018533	smn1	100	88.028	ENSPNYG00000014148	smn1	100	88.028	Pundamilia_nyererei
ENSSDUG00000018533	smn1	100	65.854	ENSPNAG00000014007	smn1	87	67.832	Pygocentrus_nattereri
ENSSDUG00000018533	smn1	94	51.812	ENSRNOG00000018067	Smn1	92	51.292	Rattus_norvegicus
ENSSDUG00000018533	smn1	94	52.688	ENSRBIG00000037052	-	91	52.297	Rhinopithecus_bieti
ENSSDUG00000018533	smn1	97	46.570	ENSRBIG00000036775	-	93	46.975	Rhinopithecus_bieti
ENSSDUG00000018533	smn1	94	52.688	ENSRROG00000039399	-	94	50.690	Rhinopithecus_roxellana
ENSSDUG00000018533	smn1	94	47.232	ENSRROG00000031088	-	91	47.970	Rhinopithecus_roxellana
ENSSDUG00000018533	smn1	55	54.658	ENSSBOG00000020112	-	87	44.800	Saimiri_boliviensis_boliviensis
ENSSDUG00000018533	smn1	94	54.182	ENSSBOG00000011665	-	91	49.458	Saimiri_boliviensis_boliviensis
ENSSDUG00000018533	smn1	96	54.386	ENSSHAG00000001499	-	98	46.403	Sarcophilus_harrisii
ENSSDUG00000018533	smn1	100	62.116	ENSSFOG00015015507	smn1	100	61.775	Scleropages_formosus
ENSSDUG00000018533	smn1	100	83.451	ENSSMAG00000007922	smn1	100	85.563	Scophthalmus_maximus
ENSSDUG00000018533	smn1	100	99.648	ENSSLDG00000021135	smn1	100	99.648	Seriola_lalandi_dorsalis
ENSSDUG00000018533	smn1	97	55.439	ENSSPUG00000000373	-	99	50.690	Sphenodon_punctatus
ENSSDUG00000018533	smn1	100	88.732	ENSSPAG00000004345	smn1	100	89.085	Stegastes_partitus
ENSSDUG00000018533	smn1	94	51.625	ENSSSCG00000016970	-	92	52.688	Sus_scrofa
ENSSDUG00000018533	smn1	57	59.167	ENSSSCG00000029127	-	74	68.750	Sus_scrofa
ENSSDUG00000018533	smn1	91	51.087	ENSTGUG00000001548	-	95	46.296	Taeniopygia_guttata
ENSSDUG00000018533	smn1	100	71.831	ENSTRUG00000000736	smn	100	74.296	Takifugu_rubripes
ENSSDUG00000018533	smn1	100	69.759	ENSTNIG00000009892	smn1	100	72.165	Tetraodon_nigroviridis
ENSSDUG00000018533	smn1	54	61.146	ENSTBEG00000002399	-	87	56.354	Tupaia_belangeri
ENSSDUG00000018533	smn1	87	50.000	ENSTTRG00000005080	-	91	53.480	Tursiops_truncatus
ENSSDUG00000018533	smn1	54	62.821	ENSUAMG00000024947	-	66	57.459	Ursus_americanus
ENSSDUG00000018533	smn1	94	54.152	ENSUMAG00000007842	-	69	52.878	Ursus_maritimus
ENSSDUG00000018533	smn1	91	49.618	ENSVPAG00000009887	-	62	82.609	Vicugna_pacos
ENSSDUG00000018533	smn1	94	50.714	ENSVVUG00000006934	-	93	51.079	Vulpes_vulpes
ENSSDUG00000018533	smn1	95	54.676	ENSXETG00000018189	smn2	95	49.310	Xenopus_tropicalis
ENSSDUG00000018533	smn1	87	31.660	ENSXETG00000004912	-	82	56.897	Xenopus_tropicalis
ENSSDUG00000018533	smn1	100	84.859	ENSXMAG00000001521	smn1	100	84.859	Xiphophorus_maculatus