EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000018586 (Gene tree)
Gene ID: 111237116
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 6262 bases
Position: chrBDQW01000811.1:345637-351898
Accession: 111237116
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000025622	SRP54	PF00448.22	7.3e-77	1	1
ENSSDUP00000025622	SRP54_N	PF02881.19	4.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000026089	-	2424	XM_022766094	ENSSDUP00000025622	504 (aa)	XP_022621815	UPI000BBE5B71

Gene Model

Click here to download ENSSDUG00000018586's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018586's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000018586	srp54	100	95.635	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSSDUG00000018586	srp54	100	99.405	ENSAPOG00000011314	srp54	100	99.405	Acanthochromis_polyacanthus
ENSSDUG00000018586	srp54	100	95.635	ENSAMEG00000015544	SRP54	100	95.635	Ailuropoda_melanoleuca
ENSSDUG00000018586	srp54	89	98.441	ENSACIG00000022831	srp54	97	98.441	Amphilophus_citrinellus
ENSSDUG00000018586	srp54	100	99.405	ENSAOCG00000019401	srp54	100	99.405	Amphiprion_ocellaris
ENSSDUG00000018586	srp54	100	99.405	ENSAPEG00000001977	srp54	100	99.405	Amphiprion_percula
ENSSDUG00000018586	srp54	100	99.206	ENSATEG00000013877	srp54	100	99.206	Anabas_testudineus
ENSSDUG00000018586	srp54	94	94.937	ENSAPLG00000010125	SRP54	95	94.937	Anas_platyrhynchos
ENSSDUG00000018586	srp54	100	95.040	ENSACAG00000002103	-	100	95.040	Anolis_carolinensis
ENSSDUG00000018586	srp54	65	79.154	ENSACAG00000001124	-	100	79.154	Anolis_carolinensis
ENSSDUG00000018586	srp54	86	91.935	ENSACAG00000010631	-	100	91.935	Anolis_carolinensis
ENSSDUG00000018586	srp54	100	95.635	ENSANAG00000022133	SRP54	100	95.635	Aotus_nancymaae
ENSSDUG00000018586	srp54	100	99.405	ENSACLG00000015866	srp54	100	99.405	Astatotilapia_calliptera
ENSSDUG00000018586	srp54	100	97.817	ENSAMXG00000032669	SRP54	100	97.817	Astyanax_mexicanus
ENSSDUG00000018586	srp54	100	95.635	ENSBTAG00000019085	SRP54	100	95.635	Bos_taurus
ENSSDUG00000018586	srp54	98	72.490	WBGene00009012	F21D5.7	100	72.490	Caenorhabditis_elegans
ENSSDUG00000018586	srp54	100	95.635	ENSCJAG00000006581	SRP54	100	95.635	Callithrix_jacchus
ENSSDUG00000018586	srp54	100	95.635	ENSCAFG00000013331	SRP54	100	95.635	Canis_familiaris
ENSSDUG00000018586	srp54	100	95.635	ENSCAFG00020023427	SRP54	100	95.635	Canis_lupus_dingo
ENSSDUG00000018586	srp54	100	95.635	ENSCHIG00000026345	SRP54	100	95.635	Capra_hircus
ENSSDUG00000018586	srp54	94	84.000	ENSTSYG00000035333	-	93	84.000	Carlito_syrichta
ENSSDUG00000018586	srp54	100	95.437	ENSTSYG00000002680	-	100	95.437	Carlito_syrichta
ENSSDUG00000018586	srp54	94	61.429	ENSCAPG00000008780	SRP54	100	61.429	Cavia_aperea
ENSSDUG00000018586	srp54	100	95.238	ENSCPOG00000003691	SRP54	100	95.238	Cavia_porcellus
ENSSDUG00000018586	srp54	90	95.000	ENSCCAG00000024179	SRP54	100	95.227	Cebus_capucinus
ENSSDUG00000018586	srp54	100	95.635	ENSCATG00000034083	SRP54	100	95.635	Cercocebus_atys
ENSSDUG00000018586	srp54	100	95.635	ENSCLAG00000015076	SRP54	100	95.635	Chinchilla_lanigera
ENSSDUG00000018586	srp54	100	95.635	ENSCSAG00000015575	SRP54	100	95.635	Chlorocebus_sabaeus
ENSSDUG00000018586	srp54	95	84.615	ENSCHOG00000008986	SRP54	100	84.615	Choloepus_hoffmanni
ENSSDUG00000018586	srp54	100	95.635	ENSCPBG00000026195	SRP54	100	95.635	Chrysemys_picta_bellii
ENSSDUG00000018586	srp54	100	82.738	ENSCING00000007380	-	100	82.738	Ciona_intestinalis
ENSSDUG00000018586	srp54	100	95.635	ENSCANG00000028532	SRP54	100	95.635	Colobus_angolensis_palliatus
ENSSDUG00000018586	srp54	100	96.032	ENSCGRG00001009525	-	100	96.032	Cricetulus_griseus_chok1gshd
ENSSDUG00000018586	srp54	76	96.364	ENSCGRG00000009453	-	89	96.364	Cricetulus_griseus_crigri
ENSSDUG00000018586	srp54	100	98.810	ENSCSEG00000012392	srp54	100	98.810	Cynoglossus_semilaevis
ENSSDUG00000018586	srp54	100	99.008	ENSCVAG00000010395	srp54	100	99.008	Cyprinodon_variegatus
ENSSDUG00000018586	srp54	100	97.817	ENSDARG00000098367	srp54	100	97.817	Danio_rerio
ENSSDUG00000018586	srp54	100	95.635	ENSDNOG00000032525	SRP54	100	95.635	Dasypus_novemcinctus
ENSSDUG00000018586	srp54	89	80.973	ENSDORG00000005159	-	98	80.973	Dipodomys_ordii
ENSSDUG00000018586	srp54	96	78.969	FBgn0010747	Srp54k	98	78.514	Drosophila_melanogaster
ENSSDUG00000018586	srp54	100	94.841	ENSETEG00000016307	-	100	94.841	Echinops_telfairi
ENSSDUG00000018586	srp54	83	55.502	ENSETEG00000012102	-	99	55.502	Echinops_telfairi
ENSSDUG00000018586	srp54	100	88.690	ENSEBUG00000009437	-	100	88.690	Eptatretus_burgeri
ENSSDUG00000018586	srp54	100	95.635	ENSEASG00005002057	SRP54	100	95.635	Equus_asinus_asinus
ENSSDUG00000018586	srp54	99	95.382	ENSECAG00000018042	SRP54	98	95.382	Equus_caballus
ENSSDUG00000018586	srp54	100	79.960	ENSEEUG00000001511	SRP54	100	79.960	Erinaceus_europaeus
ENSSDUG00000018586	srp54	100	97.421	ENSELUG00000003395	srp54	100	97.421	Esox_lucius
ENSSDUG00000018586	srp54	100	95.833	ENSFCAG00000032033	SRP54	100	95.833	Felis_catus
ENSSDUG00000018586	srp54	100	95.238	ENSFALG00000005995	SRP54	100	95.238	Ficedula_albicollis
ENSSDUG00000018586	srp54	100	95.635	ENSFDAG00000016767	SRP54	100	95.635	Fukomys_damarensis
ENSSDUG00000018586	srp54	100	99.008	ENSFHEG00000004263	srp54	100	99.008	Fundulus_heteroclitus
ENSSDUG00000018586	srp54	95	92.050	ENSGMOG00000011391	srp54	100	92.050	Gadus_morhua
ENSSDUG00000018586	srp54	100	95.238	ENSGALG00000023135	SRP54	100	95.238	Gallus_gallus
ENSSDUG00000018586	srp54	100	99.206	ENSGAFG00000011586	srp54	100	99.206	Gambusia_affinis
ENSSDUG00000018586	srp54	100	98.611	ENSGACG00000004181	srp54	100	98.611	Gasterosteus_aculeatus
ENSSDUG00000018586	srp54	100	95.635	ENSGAGG00000014766	SRP54	100	95.635	Gopherus_agassizii
ENSSDUG00000018586	srp54	100	95.635	ENSGGOG00000002926	SRP54	100	95.635	Gorilla_gorilla
ENSSDUG00000018586	srp54	100	99.405	ENSHBUG00000005678	srp54	100	99.405	Haplochromis_burtoni
ENSSDUG00000018586	srp54	100	95.635	ENSHGLG00000002850	SRP54	100	95.635	Heterocephalus_glaber_female
ENSSDUG00000018586	srp54	100	95.635	ENSHGLG00100005263	SRP54	100	95.635	Heterocephalus_glaber_male
ENSSDUG00000018586	srp54	100	66.733	ENSHGLG00100007281	-	100	66.733	Heterocephalus_glaber_male
ENSSDUG00000018586	srp54	100	97.619	ENSHCOG00000021127	srp54	100	97.619	Hippocampus_comes
ENSSDUG00000018586	srp54	100	97.024	ENSIPUG00000001420	srp54	100	97.024	Ictalurus_punctatus
ENSSDUG00000018586	srp54	100	95.635	ENSSTOG00000016023	SRP54	100	95.635	Ictidomys_tridecemlineatus
ENSSDUG00000018586	srp54	100	91.270	ENSJJAG00000013417	-	100	91.270	Jaculus_jaculus
ENSSDUG00000018586	srp54	87	74.318	ENSJJAG00000016404	-	100	74.318	Jaculus_jaculus
ENSSDUG00000018586	srp54	100	98.611	ENSKMAG00000007707	srp54	100	98.611	Kryptolebias_marmoratus
ENSSDUG00000018586	srp54	100	99.206	ENSLBEG00000021122	srp54	100	99.206	Labrus_bergylta
ENSSDUG00000018586	srp54	100	99.206	ENSLBEG00000018690	srp54	100	99.206	Labrus_bergylta
ENSSDUG00000018586	srp54	100	95.238	ENSLACG00000017890	SRP54	100	95.238	Latimeria_chalumnae
ENSSDUG00000018586	srp54	100	97.817	ENSLOCG00000009440	srp54	100	97.817	Lepisosteus_oculatus
ENSSDUG00000018586	srp54	100	95.635	ENSLAFG00000012007	SRP54	100	95.635	Loxodonta_africana
ENSSDUG00000018586	srp54	100	95.635	ENSMFAG00000044371	SRP54	100	95.635	Macaca_fascicularis
ENSSDUG00000018586	srp54	100	95.635	ENSMMUG00000015073	FAM177A1	100	95.635	Macaca_mulatta
ENSSDUG00000018586	srp54	100	95.635	ENSMNEG00000006947	SRP54	100	95.635	Macaca_nemestrina
ENSSDUG00000018586	srp54	100	95.635	ENSMLEG00000042251	SRP54	100	95.635	Mandrillus_leucophaeus
ENSSDUG00000018586	srp54	100	99.405	ENSMAMG00000004803	srp54	100	99.405	Mastacembelus_armatus
ENSSDUG00000018586	srp54	100	99.405	ENSMZEG00005027528	srp54	100	99.405	Maylandia_zebra
ENSSDUG00000018586	srp54	100	90.711	ENSMGAG00000012481	SRP54	100	90.711	Meleagris_gallopavo
ENSSDUG00000018586	srp54	100	95.833	ENSMAUG00000014447	-	100	95.833	Mesocricetus_auratus
ENSSDUG00000018586	srp54	100	95.635	ENSMICG00000010270	SRP54	100	95.635	Microcebus_murinus
ENSSDUG00000018586	srp54	87	95.455	ENSMOCG00000000948	-	100	95.455	Microtus_ochrogaster
ENSSDUG00000018586	srp54	90	96.476	ENSMMOG00000020303	srp54	99	96.476	Mola_mola
ENSSDUG00000018586	srp54	100	95.635	ENSMODG00000012925	-	100	95.635	Monodelphis_domestica
ENSSDUG00000018586	srp54	100	95.635	ENSMODG00000023150	-	100	95.635	Monodelphis_domestica
ENSSDUG00000018586	srp54	88	98.871	ENSMALG00000009163	srp54	98	98.871	Monopterus_albus
ENSSDUG00000018586	srp54	100	95.833	MGP_CAROLIEiJ_G0017754	-	100	95.833	Mus_caroli
ENSSDUG00000018586	srp54	100	95.833	ENSMUSG00000073079	Srp54a	100	97.273	Mus_musculus
ENSSDUG00000018586	srp54	100	95.833	ENSMUSG00000112449	Srp54b	100	95.833	Mus_musculus
ENSSDUG00000018586	srp54	100	95.040	ENSMUSG00000079108	Srp54c	100	95.040	Mus_musculus
ENSSDUG00000018586	srp54	100	95.833	MGP_PahariEiJ_G0029510	-	100	95.833	Mus_pahari
ENSSDUG00000018586	srp54	100	95.635	ENSMPUG00000016302	SRP54	100	95.635	Mustela_putorius_furo
ENSSDUG00000018586	srp54	100	95.040	ENSMLUG00000008958	SRP54	100	95.040	Myotis_lucifugus
ENSSDUG00000018586	srp54	100	86.508	ENSNGAG00000019806	-	100	86.508	Nannospalax_galili
ENSSDUG00000018586	srp54	87	99.318	ENSNBRG00000006000	srp54	100	99.318	Neolamprologus_brichardi
ENSSDUG00000018586	srp54	100	95.635	ENSNLEG00000003496	SRP54	100	95.635	Nomascus_leucogenys
ENSSDUG00000018586	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSSDUG00000018586	srp54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSSDUG00000018586	srp54	100	95.635	ENSODEG00000004865	SRP54	100	95.635	Octodon_degus
ENSSDUG00000018586	srp54	100	99.405	ENSONIG00000011768	srp54	100	99.405	Oreochromis_niloticus
ENSSDUG00000018586	srp54	100	95.635	ENSOANG00000014051	SRP54	100	95.635	Ornithorhynchus_anatinus
ENSSDUG00000018586	srp54	100	95.040	ENSOCUG00000007838	SRP54	100	95.040	Oryctolagus_cuniculus
ENSSDUG00000018586	srp54	100	99.206	ENSORLG00000010027	srp54	100	99.206	Oryzias_latipes
ENSSDUG00000018586	srp54	100	99.206	ENSORLG00020001878	srp54	100	99.206	Oryzias_latipes_hni
ENSSDUG00000018586	srp54	100	99.206	ENSORLG00015021866	srp54	100	99.206	Oryzias_latipes_hsok
ENSSDUG00000018586	srp54	100	99.405	ENSOMEG00000020952	srp54	100	99.405	Oryzias_melastigma
ENSSDUG00000018586	srp54	100	95.635	ENSOGAG00000012188	SRP54	100	95.635	Otolemur_garnettii
ENSSDUG00000018586	srp54	100	95.635	ENSOARG00000007160	SRP54	100	95.635	Ovis_aries
ENSSDUG00000018586	srp54	100	95.635	ENSPPAG00000017434	SRP54	100	95.635	Pan_paniscus
ENSSDUG00000018586	srp54	100	95.040	ENSPPRG00000014047	SRP54	100	95.040	Panthera_pardus
ENSSDUG00000018586	srp54	100	95.833	ENSPTIG00000000744	SRP54	96	95.833	Panthera_tigris_altaica
ENSSDUG00000018586	srp54	100	95.635	ENSPTRG00000006259	FAM177A1	100	95.635	Pan_troglodytes
ENSSDUG00000018586	srp54	100	95.635	ENSPANG00000023853	SRP54	100	95.635	Papio_anubis
ENSSDUG00000018586	srp54	100	97.222	ENSPKIG00000001953	srp54	100	97.222	Paramormyrops_kingsleyae
ENSSDUG00000018586	srp54	100	95.437	ENSPSIG00000006476	SRP54	100	95.437	Pelodiscus_sinensis
ENSSDUG00000018586	srp54	91	95.652	ENSPMGG00000004127	srp54	99	95.652	Periophthalmus_magnuspinnatus
ENSSDUG00000018586	srp54	100	83.929	ENSPEMG00000019634	-	100	83.929	Peromyscus_maniculatus_bairdii
ENSSDUG00000018586	srp54	100	90.079	ENSPMAG00000006078	-	100	90.079	Petromyzon_marinus
ENSSDUG00000018586	srp54	100	95.635	ENSPCIG00000016175	SRP54	100	95.635	Phascolarctos_cinereus
ENSSDUG00000018586	srp54	100	99.206	ENSPFOG00000008870	srp54	100	99.206	Poecilia_formosa
ENSSDUG00000018586	srp54	100	99.206	ENSPLAG00000009889	srp54	100	99.206	Poecilia_latipinna
ENSSDUG00000018586	srp54	100	99.206	ENSPMEG00000008601	srp54	100	99.206	Poecilia_mexicana
ENSSDUG00000018586	srp54	100	99.206	ENSPREG00000004505	srp54	100	99.206	Poecilia_reticulata
ENSSDUG00000018586	srp54	100	90.675	ENSPPYG00000005739	SRP54	100	90.675	Pongo_abelii
ENSSDUG00000018586	srp54	100	92.063	ENSPCAG00000006268	SRP54	100	92.063	Procavia_capensis
ENSSDUG00000018586	srp54	100	93.663	ENSPCOG00000022473	SRP54	100	93.663	Propithecus_coquereli
ENSSDUG00000018586	srp54	63	97.872	ENSPVAG00000010056	SRP54	82	97.872	Pteropus_vampyrus
ENSSDUG00000018586	srp54	100	99.405	ENSPNYG00000009717	srp54	100	99.405	Pundamilia_nyererei
ENSSDUG00000018586	srp54	100	97.619	ENSPNAG00000008544	srp54	100	97.619	Pygocentrus_nattereri
ENSSDUG00000018586	srp54	100	95.635	ENSRNOG00000032776	Srp54a	100	95.635	Rattus_norvegicus
ENSSDUG00000018586	srp54	100	95.635	ENSRROG00000041292	SRP54	100	95.635	Rhinopithecus_roxellana
ENSSDUG00000018586	srp54	86	51.701	YPR088C	SRP54	95	47.318	Saccharomyces_cerevisiae
ENSSDUG00000018586	srp54	94	95.359	ENSSBOG00000035145	SRP54	100	95.359	Saimiri_boliviensis_boliviensis
ENSSDUG00000018586	srp54	68	94.461	ENSSHAG00000000671	SRP54	100	94.461	Sarcophilus_harrisii
ENSSDUG00000018586	srp54	100	97.619	ENSSFOG00015013920	srp54	100	97.619	Scleropages_formosus
ENSSDUG00000018586	srp54	100	93.258	ENSSMAG00000002441	srp54	100	93.258	Scophthalmus_maximus
ENSSDUG00000018586	srp54	100	99.802	ENSSLDG00000010476	srp54	100	99.802	Seriola_lalandi_dorsalis
ENSSDUG00000018586	srp54	100	95.635	ENSSARG00000002744	SRP54	100	95.635	Sorex_araneus
ENSSDUG00000018586	srp54	100	95.635	ENSSPUG00000013101	SRP54	100	95.635	Sphenodon_punctatus
ENSSDUG00000018586	srp54	100	99.405	ENSSPAG00000002354	srp54	100	99.405	Stegastes_partitus
ENSSDUG00000018586	srp54	100	95.635	ENSSSCG00000001955	SRP54	100	95.635	Sus_scrofa
ENSSDUG00000018586	srp54	94	94.937	ENSTGUG00000011945	-	95	94.937	Taeniopygia_guttata
ENSSDUG00000018586	srp54	100	98.810	ENSTRUG00000007057	srp54	100	98.810	Takifugu_rubripes
ENSSDUG00000018586	srp54	100	98.016	ENSTNIG00000002589	srp54	100	98.016	Tetraodon_nigroviridis
ENSSDUG00000018586	srp54	89	87.025	ENSTBEG00000011409	SRP54	100	87.025	Tupaia_belangeri
ENSSDUG00000018586	srp54	100	86.508	ENSTTRG00000000928	SRP54	100	86.508	Tursiops_truncatus
ENSSDUG00000018586	srp54	52	96.565	ENSUAMG00000012385	SRP54	100	96.565	Ursus_americanus
ENSSDUG00000018586	srp54	100	95.635	ENSUMAG00000011234	SRP54	100	95.635	Ursus_maritimus
ENSSDUG00000018586	srp54	94	95.148	ENSVPAG00000005668	SRP54	100	95.148	Vicugna_pacos
ENSSDUG00000018586	srp54	100	95.635	ENSVVUG00000019962	SRP54	100	95.635	Vulpes_vulpes
ENSSDUG00000018586	srp54	100	80.868	ENSXETG00000012290	srp54	100	80.868	Xenopus_tropicalis
ENSSDUG00000018586	srp54	88	99.097	ENSXCOG00000004658	srp54	96	99.097	Xiphophorus_couchianus
ENSSDUG00000018586	srp54	100	99.206	ENSXMAG00000018315	srp54	100	99.206	Xiphophorus_maculatus