EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000018665 (Gene tree)
Gene ID: 111238142
Gene Symbol: gfm1
Alias: fc96f12|wu:fc96f12|zgc:154041
Full Name: G elongation factor mitochondrial 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 15624 bases
Position: chrBDQW01001195.1:376603-392226
Accession: 111238142
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000025781	GTP_EFTU	PF00009.27	2e-62	1	1
ENSSDUP00000025766	GTP_EFTU	PF00009.27	3.5e-61	1	1
ENSSDUP00000025781	GTP_EFTU_D2	PF03144.25	1.1e-16	1	1
ENSSDUP00000025766	GTP_EFTU_D2	PF03144.25	1.2e-16	1	1
ENSSDUP00000025781	EFG_IV	PF03764.18	4.2e-38	1	1
ENSSDUP00000025766	EFG_IV	PF03764.18	4.6e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000026248	-	2362	XM_022767543	ENSSDUP00000025781	748 (aa)	XP_022623264	UPI000BBED896
ENSSDUT00000026233	-	2331	-	ENSSDUP00000025766	776 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000018665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000018665	gfm1	94	33.914	ENSSDUG00000021273	gfm2	99	34.048
ENSSDUG00000018665	gfm1	73	38.926	ENSSDUG00000015383	eef2b	72	38.926
ENSSDUG00000018665	gfm1	53	35.294	ENSSDUG00000013385	guf1	65	37.013
ENSSDUG00000018665	gfm1	73	38.926	ENSSDUG00000005084	-	72	38.926

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000018665	gfm1	98	78.776	ENSG00000168827	GFM1	100	91.667	Homo_sapiens
ENSSDUG00000018665	gfm1	93	88.825	ENSAPOG00000016489	gfm1	99	88.825	Acanthochromis_polyacanthus
ENSSDUG00000018665	gfm1	96	81.058	ENSAMEG00000013542	GFM1	95	81.058	Ailuropoda_melanoleuca
ENSSDUG00000018665	gfm1	97	87.448	ENSACIG00000014465	gfm1	94	87.448	Amphilophus_citrinellus
ENSSDUG00000018665	gfm1	100	90.508	ENSAOCG00000006023	gfm1	100	90.508	Amphiprion_ocellaris
ENSSDUG00000018665	gfm1	100	90.241	ENSAPEG00000024499	gfm1	100	90.241	Amphiprion_percula
ENSSDUG00000018665	gfm1	100	93.048	ENSATEG00000013789	gfm1	100	93.048	Anabas_testudineus
ENSSDUG00000018665	gfm1	97	80.138	ENSAPLG00000005022	GFM1	100	80.138	Anas_platyrhynchos
ENSSDUG00000018665	gfm1	97	80.690	ENSACAG00000006829	GFM1	99	80.218	Anolis_carolinensis
ENSSDUG00000018665	gfm1	100	77.896	ENSANAG00000035983	GFM1	100	77.896	Aotus_nancymaae
ENSSDUG00000018665	gfm1	100	92.914	ENSACLG00000016586	gfm1	100	92.914	Astatotilapia_calliptera
ENSSDUG00000018665	gfm1	100	84.626	ENSAMXG00000013435	gfm1	98	85.499	Astyanax_mexicanus
ENSSDUG00000018665	gfm1	96	80.223	ENSBTAG00000027795	GFM1	98	78.677	Bos_taurus
ENSSDUG00000018665	gfm1	94	57.775	WBGene00009246	gfm-1	95	57.444	Caenorhabditis_elegans
ENSSDUG00000018665	gfm1	97	80.441	ENSCJAG00000000363	GFM1	98	79.647	Callithrix_jacchus
ENSSDUG00000018665	gfm1	98	79.973	ENSCAFG00000009006	GFM1	100	80.769	Canis_familiaris
ENSSDUG00000018665	gfm1	98	79.728	ENSCAFG00020005878	GFM1	98	81.198	Canis_lupus_dingo
ENSSDUG00000018665	gfm1	96	80.362	ENSCHIG00000015220	GFM1	98	78.677	Capra_hircus
ENSSDUG00000018665	gfm1	100	78.220	ENSTSYG00000002013	GFM1	100	78.220	Carlito_syrichta
ENSSDUG00000018665	gfm1	96	70.442	ENSCAPG00000005699	GFM1	97	70.442	Cavia_aperea
ENSSDUG00000018665	gfm1	100	78.117	ENSCPOG00000001194	GFM1	100	78.117	Cavia_porcellus
ENSSDUG00000018665	gfm1	97	79.890	ENSCCAG00000025561	GFM1	97	79.890	Cebus_capucinus
ENSSDUG00000018665	gfm1	100	78.296	ENSCATG00000037622	GFM1	100	78.296	Cercocebus_atys
ENSSDUG00000018665	gfm1	97	79.339	ENSCLAG00000002503	GFM1	97	78.962	Chinchilla_lanigera
ENSSDUG00000018665	gfm1	100	78.429	ENSCSAG00000012162	GFM1	100	78.429	Chlorocebus_sabaeus
ENSSDUG00000018665	gfm1	100	69.629	ENSCHOG00000004867	GFM1	100	69.629	Choloepus_hoffmanni
ENSSDUG00000018665	gfm1	100	79.679	ENSCPBG00000018367	GFM1	98	80.707	Chrysemys_picta_bellii
ENSSDUG00000018665	gfm1	94	59.021	ENSCING00000011960	-	93	59.021	Ciona_intestinalis
ENSSDUG00000018665	gfm1	94	60.482	ENSCSAVG00000008514	-	99	59.544	Ciona_savignyi
ENSSDUG00000018665	gfm1	98	79.320	ENSCANG00000031714	GFM1	100	78.162	Colobus_angolensis_palliatus
ENSSDUG00000018665	gfm1	100	77.763	ENSCGRG00001022095	GFM1	100	77.763	Cricetulus_griseus_chok1gshd
ENSSDUG00000018665	gfm1	100	77.763	ENSCGRG00000012043	GFM1	100	77.763	Cricetulus_griseus_crigri
ENSSDUG00000018665	gfm1	97	84.232	ENSCSEG00000017088	gfm1	99	84.232	Cynoglossus_semilaevis
ENSSDUG00000018665	gfm1	100	92.246	ENSCVAG00000004126	gfm1	100	92.246	Cyprinodon_variegatus
ENSSDUG00000018665	gfm1	100	82.888	ENSDARG00000063624	gfm1	100	82.888	Danio_rerio
ENSSDUG00000018665	gfm1	55	78.973	ENSDNOG00000016385	-	100	78.973	Dasypus_novemcinctus
ENSSDUG00000018665	gfm1	99	77.358	ENSDORG00000014165	Gfm1	98	77.358	Dipodomys_ordii
ENSSDUG00000018665	gfm1	95	68.688	FBgn0263133	mEFG1	95	68.688	Drosophila_melanogaster
ENSSDUG00000018665	gfm1	96	72.816	ENSETEG00000019197	GFM1	98	71.371	Echinops_telfairi
ENSSDUG00000018665	gfm1	90	63.111	ENSEBUG00000012794	gfm1	100	63.111	Eptatretus_burgeri
ENSSDUG00000018665	gfm1	96	59.583	ENSEEUG00000000429	GFM1	99	59.583	Erinaceus_europaeus
ENSSDUG00000018665	gfm1	100	86.096	ENSELUG00000014728	gfm1	100	86.096	Esox_lucius
ENSSDUG00000018665	gfm1	97	80.028	ENSFCAG00000013291	GFM1	98	78.976	Felis_catus
ENSSDUG00000018665	gfm1	90	80.148	ENSFALG00000007619	GFM1	100	80.148	Ficedula_albicollis
ENSSDUG00000018665	gfm1	100	77.454	ENSFDAG00000016559	GFM1	100	77.454	Fukomys_damarensis
ENSSDUG00000018665	gfm1	100	91.043	ENSFHEG00000006091	gfm1	100	91.043	Fundulus_heteroclitus
ENSSDUG00000018665	gfm1	97	86.657	ENSGMOG00000010161	gfm1	100	86.657	Gadus_morhua
ENSSDUG00000018665	gfm1	97	79.586	ENSGALG00000009634	GFM1	99	79.396	Gallus_gallus
ENSSDUG00000018665	gfm1	100	90.241	ENSGAFG00000012527	gfm1	100	90.241	Gambusia_affinis
ENSSDUG00000018665	gfm1	100	90.521	ENSGACG00000009864	gfm1	100	90.521	Gasterosteus_aculeatus
ENSSDUG00000018665	gfm1	98	79.048	ENSGGOG00000003085	GFM1	100	77.896	Gorilla_gorilla
ENSSDUG00000018665	gfm1	100	93.048	ENSHBUG00000002120	gfm1	100	93.048	Haplochromis_burtoni
ENSSDUG00000018665	gfm1	97	78.650	ENSHGLG00000016855	GFM1	100	76.393	Heterocephalus_glaber_female
ENSSDUG00000018665	gfm1	97	78.650	ENSHGLG00100013049	GFM1	100	76.393	Heterocephalus_glaber_male
ENSSDUG00000018665	gfm1	100	90.241	ENSHCOG00000007638	gfm1	100	90.241	Hippocampus_comes
ENSSDUG00000018665	gfm1	100	85.027	ENSIPUG00000005873	gfm1	100	85.027	Ictalurus_punctatus
ENSSDUG00000018665	gfm1	97	78.650	ENSSTOG00000010150	GFM1	98	78.650	Ictidomys_tridecemlineatus
ENSSDUG00000018665	gfm1	100	77.497	ENSJJAG00000016447	Gfm1	100	77.497	Jaculus_jaculus
ENSSDUG00000018665	gfm1	100	86.631	ENSKMAG00000020768	gfm1	100	86.631	Kryptolebias_marmoratus
ENSSDUG00000018665	gfm1	94	90.870	ENSLBEG00000021315	gfm1	100	90.870	Labrus_bergylta
ENSSDUG00000018665	gfm1	100	80.348	ENSLACG00000012295	GFM1	100	80.348	Latimeria_chalumnae
ENSSDUG00000018665	gfm1	97	79.754	ENSLOCG00000003778	gfm1	100	79.754	Lepisosteus_oculatus
ENSSDUG00000018665	gfm1	99	76.800	ENSLAFG00000010945	GFM1	99	77.500	Loxodonta_africana
ENSSDUG00000018665	gfm1	100	78.162	ENSMFAG00000035731	GFM1	100	78.162	Macaca_fascicularis
ENSSDUG00000018665	gfm1	100	78.162	ENSMMUG00000004961	GFM1	100	78.162	Macaca_mulatta
ENSSDUG00000018665	gfm1	100	78.029	ENSMNEG00000033245	GFM1	100	78.029	Macaca_nemestrina
ENSSDUG00000018665	gfm1	97	78.483	ENSMLEG00000030908	GFM1	99	78.108	Mandrillus_leucophaeus
ENSSDUG00000018665	gfm1	100	92.513	ENSMAMG00000011760	gfm1	100	92.513	Mastacembelus_armatus
ENSSDUG00000018665	gfm1	100	93.048	ENSMZEG00005016639	gfm1	100	93.048	Maylandia_zebra
ENSSDUG00000018665	gfm1	97	79.558	ENSMGAG00000010641	GFM1	97	79.668	Meleagris_gallopavo
ENSSDUG00000018665	gfm1	97	79.862	ENSMAUG00000000611	Gfm1	99	78.947	Mesocricetus_auratus
ENSSDUG00000018665	gfm1	97	80.441	ENSMICG00000049086	GFM1	99	78.486	Microcebus_murinus
ENSSDUG00000018665	gfm1	100	78.029	ENSMOCG00000000465	Gfm1	99	79.082	Microtus_ochrogaster
ENSSDUG00000018665	gfm1	97	91.598	ENSMMOG00000012538	gfm1	98	91.598	Mola_mola
ENSSDUG00000018665	gfm1	99	78.697	ENSMODG00000015673	GFM1	99	78.697	Monodelphis_domestica
ENSSDUG00000018665	gfm1	96	89.958	ENSMALG00000012508	gfm1	95	89.958	Monopterus_albus
ENSSDUG00000018665	gfm1	96	80.474	MGP_CAROLIEiJ_G0025052	Gfm1	98	78.940	Mus_caroli
ENSSDUG00000018665	gfm1	96	80.474	ENSMUSG00000027774	Gfm1	98	78.940	Mus_musculus
ENSSDUG00000018665	gfm1	100	77.630	MGP_PahariEiJ_G0026495	Gfm1	100	77.630	Mus_pahari
ENSSDUG00000018665	gfm1	96	80.474	MGP_SPRETEiJ_G0025994	Gfm1	98	78.940	Mus_spretus
ENSSDUG00000018665	gfm1	97	80.716	ENSMPUG00000002859	GFM1	98	79.650	Mustela_putorius_furo
ENSSDUG00000018665	gfm1	97	80.716	ENSMLUG00000000452	GFM1	98	79.650	Myotis_lucifugus
ENSSDUG00000018665	gfm1	100	77.600	ENSNGAG00000012375	Gfm1	100	77.600	Nannospalax_galili
ENSSDUG00000018665	gfm1	97	92.857	ENSNBRG00000004631	gfm1	99	92.857	Neolamprologus_brichardi
ENSSDUG00000018665	gfm1	97	79.752	ENSNLEG00000004176	GFM1	100	77.896	Nomascus_leucogenys
ENSSDUG00000018665	gfm1	91	71.176	ENSMEUG00000007784	GFM1	99	71.176	Notamacropus_eugenii
ENSSDUG00000018665	gfm1	100	77.437	ENSOPRG00000009860	GFM1	100	77.437	Ochotona_princeps
ENSSDUG00000018665	gfm1	98	79.428	ENSODEG00000004316	GFM1	100	77.984	Octodon_degus
ENSSDUG00000018665	gfm1	100	92.914	ENSONIG00000003772	gfm1	100	92.914	Oreochromis_niloticus
ENSSDUG00000018665	gfm1	98	79.564	ENSOCUG00000013561	GFM1	98	79.404	Oryctolagus_cuniculus
ENSSDUG00000018665	gfm1	95	90.254	ENSORLG00000006487	gfm1	100	90.254	Oryzias_latipes
ENSSDUG00000018665	gfm1	100	89.439	ENSORLG00020003362	gfm1	100	89.439	Oryzias_latipes_hni
ENSSDUG00000018665	gfm1	100	89.305	ENSORLG00015005829	gfm1	100	89.305	Oryzias_latipes_hsok
ENSSDUG00000018665	gfm1	100	91.043	ENSOMEG00000012894	gfm1	100	91.043	Oryzias_melastigma
ENSSDUG00000018665	gfm1	97	79.477	ENSOGAG00000008298	GFM1	98	78.437	Otolemur_garnettii
ENSSDUG00000018665	gfm1	96	79.473	ENSOARG00000002409	GFM1	99	79.473	Ovis_aries
ENSSDUG00000018665	gfm1	98	79.048	ENSPPAG00000033881	GFM1	100	77.896	Pan_paniscus
ENSSDUG00000018665	gfm1	97	80.028	ENSPPRG00000009281	GFM1	98	78.976	Panthera_pardus
ENSSDUG00000018665	gfm1	97	79.890	ENSPTIG00000012416	GFM1	98	78.841	Panthera_tigris_altaica
ENSSDUG00000018665	gfm1	98	79.048	ENSPTRG00000015570	GFM1	100	77.896	Pan_troglodytes
ENSSDUG00000018665	gfm1	100	78.162	ENSPANG00000016512	GFM1	100	78.162	Papio_anubis
ENSSDUG00000018665	gfm1	100	84.358	ENSPKIG00000004876	gfm1	100	84.358	Paramormyrops_kingsleyae
ENSSDUG00000018665	gfm1	100	79.814	ENSPSIG00000012567	GFM1	99	80.702	Pelodiscus_sinensis
ENSSDUG00000018665	gfm1	97	88.690	ENSPMGG00000014068	gfm1	100	88.690	Periophthalmus_magnuspinnatus
ENSSDUG00000018665	gfm1	100	77.630	ENSPEMG00000008942	Gfm1	99	78.677	Peromyscus_maniculatus_bairdii
ENSSDUG00000018665	gfm1	86	76.947	ENSPCIG00000020195	GFM1	98	78.041	Phascolarctos_cinereus
ENSSDUG00000018665	gfm1	100	90.642	ENSPFOG00000011022	gfm1	100	90.642	Poecilia_formosa
ENSSDUG00000018665	gfm1	99	89.879	ENSPLAG00000019585	gfm1	100	90.449	Poecilia_latipinna
ENSSDUG00000018665	gfm1	100	90.508	ENSPMEG00000012376	gfm1	100	90.508	Poecilia_mexicana
ENSSDUG00000018665	gfm1	100	90.775	ENSPREG00000001332	gfm1	95	90.775	Poecilia_reticulata
ENSSDUG00000018665	gfm1	98	78.776	ENSPPYG00000014244	GFM1	100	77.630	Pongo_abelii
ENSSDUG00000018665	gfm1	94	79.090	ENSPCAG00000008934	GFM1	100	79.090	Procavia_capensis
ENSSDUG00000018665	gfm1	97	80.165	ENSPCOG00000022259	GFM1	99	78.088	Propithecus_coquereli
ENSSDUG00000018665	gfm1	97	79.614	ENSPVAG00000013605	GFM1	98	78.571	Pteropus_vampyrus
ENSSDUG00000018665	gfm1	100	92.781	ENSPNYG00000006037	gfm1	100	92.781	Pundamilia_nyererei
ENSSDUG00000018665	gfm1	100	85.160	ENSPNAG00000001237	gfm1	100	85.160	Pygocentrus_nattereri
ENSSDUG00000018665	gfm1	97	80.000	ENSRNOG00000012873	Gfm1	99	79.082	Rattus_norvegicus
ENSSDUG00000018665	gfm1	98	79.320	ENSRBIG00000031363	GFM1	100	78.162	Rhinopithecus_bieti
ENSSDUG00000018665	gfm1	98	79.456	ENSRROG00000031081	GFM1	100	78.296	Rhinopithecus_roxellana
ENSSDUG00000018665	gfm1	96	55.234	YLR069C	-	94	55.234	Saccharomyces_cerevisiae
ENSSDUG00000018665	gfm1	100	78.162	ENSSBOG00000023252	GFM1	100	78.162	Saimiri_boliviensis_boliviensis
ENSSDUG00000018665	gfm1	97	80.775	ENSSHAG00000017772	GFM1	99	79.139	Sarcophilus_harrisii
ENSSDUG00000018665	gfm1	100	83.979	ENSSFOG00015003117	gfm1	100	83.979	Scleropages_formosus
ENSSDUG00000018665	gfm1	100	92.380	ENSSMAG00000013221	gfm1	100	92.380	Scophthalmus_maximus
ENSSDUG00000018665	gfm1	100	99.733	ENSSLDG00000020606	gfm1	100	99.733	Seriola_lalandi_dorsalis
ENSSDUG00000018665	gfm1	99	77.476	ENSSPUG00000018686	GFM1	98	78.700	Sphenodon_punctatus
ENSSDUG00000018665	gfm1	100	93.048	ENSSPAG00000008800	gfm1	100	93.048	Stegastes_partitus
ENSSDUG00000018665	gfm1	96	80.362	ENSSSCG00000025651	GFM1	98	78.812	Sus_scrofa
ENSSDUG00000018665	gfm1	100	88.102	ENSTRUG00000009244	gfm1	100	88.102	Takifugu_rubripes
ENSSDUG00000018665	gfm1	100	90.508	ENSTNIG00000007729	gfm1	100	90.508	Tetraodon_nigroviridis
ENSSDUG00000018665	gfm1	90	72.000	ENSTBEG00000017404	GFM1	89	72.000	Tupaia_belangeri
ENSSDUG00000018665	gfm1	96	80.223	ENSTTRG00000001735	GFM1	95	80.223	Tursiops_truncatus
ENSSDUG00000018665	gfm1	97	80.303	ENSUAMG00000026381	GFM1	98	79.111	Ursus_americanus
ENSSDUG00000018665	gfm1	97	80.303	ENSUMAG00000011268	GFM1	98	79.111	Ursus_maritimus
ENSSDUG00000018665	gfm1	97	76.828	ENSVPAG00000009444	GFM1	98	75.843	Vicugna_pacos
ENSSDUG00000018665	gfm1	98	79.645	ENSVVUG00000020091	GFM1	100	80.473	Vulpes_vulpes
ENSSDUG00000018665	gfm1	100	80.984	ENSXETG00000032551	GFM1	100	80.984	Xenopus_tropicalis
ENSSDUG00000018665	gfm1	54	86.732	ENSXCOG00000012590	gfm1	94	86.732	Xiphophorus_couchianus
ENSSDUG00000018665	gfm1	100	90.642	ENSXMAG00000000261	gfm1	100	90.642	Xiphophorus_maculatus