EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000018887 (Gene tree)
Gene ID: 111230344
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 7573 bases
Position: chrBDQW01000262.1:614157-621729
Accession: 111230344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000026037	zf-CCCH	PF00642.24	3.4e-20	1	2
ENSSDUP00000026037	zf-CCCH	PF00642.24	3.4e-20	2	2
ENSSDUP00000026037	zf-CCHC	PF00098.23	4.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000026506	-	5231	XM_022757038	ENSSDUP00000026037	266 (aa)	XP_022612759	UPI000BBE873F

Gene Model

Click here to download ENSSDUG00000018887's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018887's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000018887	cpsf4	100	83.333	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSSDUG00000018887	cpsf4	67	88.764	ENSAPOG00000004921	cpsf4	100	88.764	Acanthochromis_polyacanthus
ENSSDUG00000018887	cpsf4	100	83.704	ENSAMEG00000006252	CPSF4	100	83.704	Ailuropoda_melanoleuca
ENSSDUG00000018887	cpsf4	100	85.338	ENSACIG00000009248	cpsf4	100	86.466	Amphilophus_citrinellus
ENSSDUG00000018887	cpsf4	100	95.113	ENSAOCG00000019616	cpsf4	100	95.113	Amphiprion_ocellaris
ENSSDUG00000018887	cpsf4	100	95.113	ENSAPEG00000011679	cpsf4	100	95.113	Amphiprion_percula
ENSSDUG00000018887	cpsf4	100	96.629	ENSATEG00000007010	cpsf4	100	96.629	Anabas_testudineus
ENSSDUG00000018887	cpsf4	100	82.222	ENSACAG00000012941	CPSF4	89	82.222	Anolis_carolinensis
ENSSDUG00000018887	cpsf4	100	83.333	ENSANAG00000021360	CPSF4	100	83.333	Aotus_nancymaae
ENSSDUG00000018887	cpsf4	100	94.361	ENSACLG00000010374	cpsf4	100	94.361	Astatotilapia_calliptera
ENSSDUG00000018887	cpsf4	100	86.296	ENSAMXG00000031647	cpsf4	100	86.296	Astyanax_mexicanus
ENSSDUG00000018887	cpsf4	100	80.827	ENSBTAG00000002090	CPSF4	100	80.827	Bos_taurus
ENSSDUG00000018887	cpsf4	100	83.333	ENSCJAG00000015826	CPSF4	100	83.333	Callithrix_jacchus
ENSSDUG00000018887	cpsf4	100	83.704	ENSCAFG00000015036	CPSF4	99	86.826	Canis_familiaris
ENSSDUG00000018887	cpsf4	100	79.259	ENSCAFG00020014462	CPSF4	100	79.259	Canis_lupus_dingo
ENSSDUG00000018887	cpsf4	100	83.333	ENSCHIG00000014313	CPSF4	100	83.333	Capra_hircus
ENSSDUG00000018887	cpsf4	100	73.881	ENSTSYG00000014604	-	100	73.881	Carlito_syrichta
ENSSDUG00000018887	cpsf4	89	75.314	ENSTSYG00000008195	-	99	75.403	Carlito_syrichta
ENSSDUG00000018887	cpsf4	100	81.273	ENSTSYG00000005712	-	100	81.273	Carlito_syrichta
ENSSDUG00000018887	cpsf4	82	83.258	ENSCAPG00000013881	CPSF4	88	82.511	Cavia_aperea
ENSSDUG00000018887	cpsf4	100	80.899	ENSCPOG00000001783	CPSF4	100	80.899	Cavia_porcellus
ENSSDUG00000018887	cpsf4	100	83.333	ENSCCAG00000028291	CPSF4	100	83.333	Cebus_capucinus
ENSSDUG00000018887	cpsf4	100	83.333	ENSCATG00000038440	CPSF4	100	83.333	Cercocebus_atys
ENSSDUG00000018887	cpsf4	100	83.333	ENSCLAG00000007050	CPSF4	100	83.333	Chinchilla_lanigera
ENSSDUG00000018887	cpsf4	100	83.333	ENSCSAG00000017795	CPSF4	100	83.333	Chlorocebus_sabaeus
ENSSDUG00000018887	cpsf4	80	79.724	ENSCPBG00000020869	CPSF4	100	82.488	Chrysemys_picta_bellii
ENSSDUG00000018887	cpsf4	62	78.788	ENSCPBG00000010269	-	99	78.788	Chrysemys_picta_bellii
ENSSDUG00000018887	cpsf4	97	55.642	ENSCING00000021080	-	97	56.322	Ciona_intestinalis
ENSSDUG00000018887	cpsf4	96	52.313	ENSCSAVG00000011469	-	97	52.313	Ciona_savignyi
ENSSDUG00000018887	cpsf4	100	83.333	ENSCANG00000019384	CPSF4	100	83.333	Colobus_angolensis_palliatus
ENSSDUG00000018887	cpsf4	100	80.899	ENSCGRG00001024184	Cpsf4	100	80.899	Cricetulus_griseus_chok1gshd
ENSSDUG00000018887	cpsf4	100	83.704	ENSCGRG00000013892	Cpsf4	100	83.704	Cricetulus_griseus_crigri
ENSSDUG00000018887	cpsf4	100	92.481	ENSCSEG00000019055	cpsf4	100	92.481	Cynoglossus_semilaevis
ENSSDUG00000018887	cpsf4	100	90.602	ENSCVAG00000016528	cpsf4	100	90.602	Cyprinodon_variegatus
ENSSDUG00000018887	cpsf4	100	84.191	ENSDARG00000020217	cpsf4	100	84.191	Danio_rerio
ENSSDUG00000018887	cpsf4	100	83.704	ENSDNOG00000006344	CPSF4	100	83.704	Dasypus_novemcinctus
ENSSDUG00000018887	cpsf4	80	83.028	ENSDORG00000000742	Cpsf4	100	83.028	Dipodomys_ordii
ENSSDUG00000018887	cpsf4	100	56.187	FBgn0015621	Clp	99	56.187	Drosophila_melanogaster
ENSSDUG00000018887	cpsf4	70	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSSDUG00000018887	cpsf4	99	65.530	ENSEBUG00000012552	cpsf4	98	65.530	Eptatretus_burgeri
ENSSDUG00000018887	cpsf4	100	80.899	ENSEASG00005002487	CPSF4	100	80.899	Equus_asinus_asinus
ENSSDUG00000018887	cpsf4	100	83.704	ENSECAG00000007525	CPSF4	100	83.704	Equus_caballus
ENSSDUG00000018887	cpsf4	63	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSSDUG00000018887	cpsf4	100	86.765	ENSELUG00000011481	cpsf4	100	87.132	Esox_lucius
ENSSDUG00000018887	cpsf4	100	83.704	ENSFCAG00000015070	CPSF4	100	83.704	Felis_catus
ENSSDUG00000018887	cpsf4	100	80.075	ENSFALG00000013799	CPSF4	100	80.075	Ficedula_albicollis
ENSSDUG00000018887	cpsf4	62	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSSDUG00000018887	cpsf4	90	82.787	ENSFDAG00000014092	CPSF4	100	82.787	Fukomys_damarensis
ENSSDUG00000018887	cpsf4	100	91.353	ENSFHEG00000010880	cpsf4	100	91.353	Fundulus_heteroclitus
ENSSDUG00000018887	cpsf4	100	83.516	ENSGMOG00000002330	cpsf4	100	83.516	Gadus_morhua
ENSSDUG00000018887	cpsf4	100	79.699	ENSGALG00000004714	CPSF4	100	79.699	Gallus_gallus
ENSSDUG00000018887	cpsf4	99	36.413	ENSGALG00000004441	-	98	36.413	Gallus_gallus
ENSSDUG00000018887	cpsf4	100	90.977	ENSGAFG00000010580	cpsf4	100	90.977	Gambusia_affinis
ENSSDUG00000018887	cpsf4	100	86.567	ENSGACG00000007792	cpsf4	100	86.567	Gasterosteus_aculeatus
ENSSDUG00000018887	cpsf4	100	83.704	ENSGAGG00000021835	CPSF4	100	83.704	Gopherus_agassizii
ENSSDUG00000018887	cpsf4	68	75.275	ENSGAGG00000020579	-	100	75.275	Gopherus_agassizii
ENSSDUG00000018887	cpsf4	100	83.333	ENSGGOG00000015131	CPSF4	100	83.333	Gorilla_gorilla
ENSSDUG00000018887	cpsf4	100	94.361	ENSHBUG00000013699	cpsf4	100	94.361	Haplochromis_burtoni
ENSSDUG00000018887	cpsf4	100	83.026	ENSHGLG00000017150	CPSF4	100	83.026	Heterocephalus_glaber_female
ENSSDUG00000018887	cpsf4	67	63.842	ENSHGLG00100017302	-	89	64.737	Heterocephalus_glaber_male
ENSSDUG00000018887	cpsf4	87	80.508	ENSHGLG00100009215	-	100	80.508	Heterocephalus_glaber_male
ENSSDUG00000018887	cpsf4	100	89.098	ENSHCOG00000004397	cpsf4	100	89.098	Hippocampus_comes
ENSSDUG00000018887	cpsf4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.240	Ictalurus_punctatus
ENSSDUG00000018887	cpsf4	100	83.704	ENSSTOG00000001688	CPSF4	100	83.704	Ictidomys_tridecemlineatus
ENSSDUG00000018887	cpsf4	100	83.333	ENSJJAG00000019426	Cpsf4	100	83.333	Jaculus_jaculus
ENSSDUG00000018887	cpsf4	100	92.105	ENSKMAG00000015642	cpsf4	100	92.105	Kryptolebias_marmoratus
ENSSDUG00000018887	cpsf4	100	59.701	ENSLACG00000018470	-	100	59.701	Latimeria_chalumnae
ENSSDUG00000018887	cpsf4	100	84.502	ENSLACG00000010938	CPSF4	100	84.502	Latimeria_chalumnae
ENSSDUG00000018887	cpsf4	100	82.963	ENSLOCG00000004814	cpsf4	100	84.015	Lepisosteus_oculatus
ENSSDUG00000018887	cpsf4	100	84.074	ENSLAFG00000000159	CPSF4	100	84.074	Loxodonta_africana
ENSSDUG00000018887	cpsf4	100	83.333	ENSMFAG00000001462	CPSF4	100	83.333	Macaca_fascicularis
ENSSDUG00000018887	cpsf4	100	83.333	ENSMMUG00000019191	CPSF4	100	83.333	Macaca_mulatta
ENSSDUG00000018887	cpsf4	100	83.333	ENSMNEG00000032306	CPSF4	100	83.333	Macaca_nemestrina
ENSSDUG00000018887	cpsf4	100	83.333	ENSMLEG00000034721	CPSF4	100	83.333	Mandrillus_leucophaeus
ENSSDUG00000018887	cpsf4	100	94.737	ENSMAMG00000006244	cpsf4	100	94.737	Mastacembelus_armatus
ENSSDUG00000018887	cpsf4	100	94.361	ENSMZEG00005007515	cpsf4	100	94.361	Maylandia_zebra
ENSSDUG00000018887	cpsf4	87	78.017	ENSMGAG00000004235	CPSF4	100	78.017	Meleagris_gallopavo
ENSSDUG00000018887	cpsf4	100	83.704	ENSMAUG00000021253	Cpsf4	100	83.704	Mesocricetus_auratus
ENSSDUG00000018887	cpsf4	100	83.333	ENSMICG00000017429	CPSF4	100	83.333	Microcebus_murinus
ENSSDUG00000018887	cpsf4	100	83.704	ENSMOCG00000014901	Cpsf4	100	83.704	Microtus_ochrogaster
ENSSDUG00000018887	cpsf4	100	93.609	ENSMMOG00000001813	cpsf4	100	93.609	Mola_mola
ENSSDUG00000018887	cpsf4	100	84.444	ENSMODG00000001367	CPSF4	100	84.444	Monodelphis_domestica
ENSSDUG00000018887	cpsf4	100	94.361	ENSMALG00000012611	cpsf4	100	94.361	Monopterus_albus
ENSSDUG00000018887	cpsf4	100	83.704	MGP_CAROLIEiJ_G0028012	Cpsf4	100	83.704	Mus_caroli
ENSSDUG00000018887	cpsf4	100	83.704	ENSMUSG00000029625	Cpsf4	100	83.704	Mus_musculus
ENSSDUG00000018887	cpsf4	100	83.704	MGP_PahariEiJ_G0024581	Cpsf4	100	83.704	Mus_pahari
ENSSDUG00000018887	cpsf4	100	83.333	MGP_SPRETEiJ_G0029013	Cpsf4	100	83.333	Mus_spretus
ENSSDUG00000018887	cpsf4	100	83.704	ENSMPUG00000016508	CPSF4	100	83.704	Mustela_putorius_furo
ENSSDUG00000018887	cpsf4	87	79.310	ENSMLUG00000010980	CPSF4	100	79.310	Myotis_lucifugus
ENSSDUG00000018887	cpsf4	100	83.704	ENSNGAG00000001567	Cpsf4	100	83.704	Nannospalax_galili
ENSSDUG00000018887	cpsf4	91	93.388	ENSNBRG00000003943	cpsf4	98	93.388	Neolamprologus_brichardi
ENSSDUG00000018887	cpsf4	100	82.022	ENSNLEG00000011074	CPSF4	100	82.022	Nomascus_leucogenys
ENSSDUG00000018887	cpsf4	100	84.444	ENSMEUG00000006955	CPSF4	100	84.444	Notamacropus_eugenii
ENSSDUG00000018887	cpsf4	100	82.963	ENSOPRG00000013663	CPSF4	100	82.963	Ochotona_princeps
ENSSDUG00000018887	cpsf4	100	83.704	ENSODEG00000011181	-	100	83.704	Octodon_degus
ENSSDUG00000018887	cpsf4	100	66.912	ENSODEG00000009779	-	100	66.912	Octodon_degus
ENSSDUG00000018887	cpsf4	98	68.821	ENSODEG00000018283	-	91	68.702	Octodon_degus
ENSSDUG00000018887	cpsf4	100	94.737	ENSONIG00000008495	cpsf4	100	94.737	Oreochromis_niloticus
ENSSDUG00000018887	cpsf4	100	52.482	ENSOANG00000009568	-	100	52.482	Ornithorhynchus_anatinus
ENSSDUG00000018887	cpsf4	87	81.092	ENSOANG00000007729	CPSF4	100	81.092	Ornithorhynchus_anatinus
ENSSDUG00000018887	cpsf4	100	82.963	ENSOCUG00000002437	CPSF4	70	82.963	Oryctolagus_cuniculus
ENSSDUG00000018887	cpsf4	100	91.353	ENSORLG00000022798	cpsf4	100	91.353	Oryzias_latipes
ENSSDUG00000018887	cpsf4	100	91.353	ENSORLG00020008548	cpsf4	100	91.353	Oryzias_latipes_hni
ENSSDUG00000018887	cpsf4	100	90.977	ENSORLG00015019575	cpsf4	100	90.977	Oryzias_latipes_hsok
ENSSDUG00000018887	cpsf4	100	90.977	ENSOMEG00000005176	cpsf4	100	90.977	Oryzias_melastigma
ENSSDUG00000018887	cpsf4	100	83.333	ENSOGAG00000010884	CPSF4	100	83.333	Otolemur_garnettii
ENSSDUG00000018887	cpsf4	100	72.993	ENSOARG00000018668	CPSF4	100	72.993	Ovis_aries
ENSSDUG00000018887	cpsf4	100	83.333	ENSPPAG00000043355	CPSF4	100	83.333	Pan_paniscus
ENSSDUG00000018887	cpsf4	100	83.704	ENSPPRG00000003134	CPSF4	100	83.704	Panthera_pardus
ENSSDUG00000018887	cpsf4	90	83.128	ENSPTIG00000005604	CPSF4	90	83.128	Panthera_tigris_altaica
ENSSDUG00000018887	cpsf4	100	83.333	ENSPTRG00000019453	CPSF4	100	83.333	Pan_troglodytes
ENSSDUG00000018887	cpsf4	100	83.333	ENSPANG00000023123	CPSF4	100	83.333	Papio_anubis
ENSSDUG00000018887	cpsf4	100	84.307	ENSPKIG00000014278	cpsf4	100	84.307	Paramormyrops_kingsleyae
ENSSDUG00000018887	cpsf4	81	58.796	ENSPSIG00000018198	-	100	58.796	Pelodiscus_sinensis
ENSSDUG00000018887	cpsf4	80	79.263	ENSPSIG00000011229	CPSF4	100	82.028	Pelodiscus_sinensis
ENSSDUG00000018887	cpsf4	100	80.451	ENSPMGG00000017735	cpsf4	100	80.451	Periophthalmus_magnuspinnatus
ENSSDUG00000018887	cpsf4	100	83.704	ENSPEMG00000004508	Cpsf4	100	83.704	Peromyscus_maniculatus_bairdii
ENSSDUG00000018887	cpsf4	100	84.444	ENSPCIG00000024776	CPSF4	100	84.444	Phascolarctos_cinereus
ENSSDUG00000018887	cpsf4	100	90.977	ENSPFOG00000014912	cpsf4	100	90.977	Poecilia_formosa
ENSSDUG00000018887	cpsf4	100	83.459	ENSPLAG00000009599	cpsf4	100	83.459	Poecilia_latipinna
ENSSDUG00000018887	cpsf4	100	90.977	ENSPMEG00000009790	cpsf4	100	90.977	Poecilia_mexicana
ENSSDUG00000018887	cpsf4	100	90.602	ENSPREG00000018166	cpsf4	100	90.602	Poecilia_reticulata
ENSSDUG00000018887	cpsf4	87	82.128	ENSPPYG00000017378	CPSF4	100	82.128	Pongo_abelii
ENSSDUG00000018887	cpsf4	100	84.074	ENSPCAG00000001892	CPSF4	100	84.074	Procavia_capensis
ENSSDUG00000018887	cpsf4	100	83.704	ENSPCOG00000012771	CPSF4	100	83.088	Propithecus_coquereli
ENSSDUG00000018887	cpsf4	100	78.519	ENSPVAG00000007531	CPSF4	100	78.519	Pteropus_vampyrus
ENSSDUG00000018887	cpsf4	100	94.361	ENSPNYG00000018559	cpsf4	100	94.361	Pundamilia_nyererei
ENSSDUG00000018887	cpsf4	100	87.037	ENSPNAG00000003736	cpsf4	100	87.037	Pygocentrus_nattereri
ENSSDUG00000018887	cpsf4	100	81.203	ENSRNOG00000000985	Cpsf4	100	81.203	Rattus_norvegicus
ENSSDUG00000018887	cpsf4	87	82.553	ENSRBIG00000033886	CPSF4	100	82.553	Rhinopithecus_bieti
ENSSDUG00000018887	cpsf4	100	80.524	ENSRROG00000040431	CPSF4	100	80.075	Rhinopithecus_roxellana
ENSSDUG00000018887	cpsf4	100	83.333	ENSSBOG00000020493	CPSF4	100	83.333	Saimiri_boliviensis_boliviensis
ENSSDUG00000018887	cpsf4	100	84.444	ENSSHAG00000011533	CPSF4	100	84.444	Sarcophilus_harrisii
ENSSDUG00000018887	cpsf4	100	83.333	ENSSFOG00015007883	cpsf4	100	83.333	Scleropages_formosus
ENSSDUG00000018887	cpsf4	100	85.714	ENSSMAG00000006374	cpsf4	100	85.714	Scophthalmus_maximus
ENSSDUG00000018887	cpsf4	100	99.624	ENSSLDG00000019078	cpsf4	100	99.624	Seriola_lalandi_dorsalis
ENSSDUG00000018887	cpsf4	87	82.553	ENSSARG00000012416	CPSF4	100	82.553	Sorex_araneus
ENSSDUG00000018887	cpsf4	96	59.216	ENSSPUG00000014803	-	97	59.216	Sphenodon_punctatus
ENSSDUG00000018887	cpsf4	100	81.852	ENSSPUG00000003549	CPSF4	100	81.852	Sphenodon_punctatus
ENSSDUG00000018887	cpsf4	100	88.346	ENSSPAG00000006174	cpsf4	100	88.346	Stegastes_partitus
ENSSDUG00000018887	cpsf4	100	80.524	ENSSSCG00000026896	CPSF4	100	80.451	Sus_scrofa
ENSSDUG00000018887	cpsf4	100	79.104	ENSTGUG00000007552	CPSF4	100	79.104	Taeniopygia_guttata
ENSSDUG00000018887	cpsf4	100	89.098	ENSTRUG00000024220	cpsf4	100	89.098	Takifugu_rubripes
ENSSDUG00000018887	cpsf4	100	90.226	ENSTNIG00000006265	cpsf4	100	90.226	Tetraodon_nigroviridis
ENSSDUG00000018887	cpsf4	87	73.418	ENSTBEG00000011406	CPSF4	100	73.418	Tupaia_belangeri
ENSSDUG00000018887	cpsf4	100	72.862	ENSTTRG00000003007	CPSF4	100	72.862	Tursiops_truncatus
ENSSDUG00000018887	cpsf4	92	79.918	ENSUAMG00000008051	CPSF4	85	79.918	Ursus_americanus
ENSSDUG00000018887	cpsf4	100	81.203	ENSUMAG00000009474	CPSF4	100	81.203	Ursus_maritimus
ENSSDUG00000018887	cpsf4	100	80.899	ENSVVUG00000008824	CPSF4	100	80.899	Vulpes_vulpes
ENSSDUG00000018887	cpsf4	100	78.136	ENSXETG00000009892	cpsf4	100	78.136	Xenopus_tropicalis
ENSSDUG00000018887	cpsf4	99	59.023	ENSXETG00000004641	cpsf4l	99	59.023	Xenopus_tropicalis
ENSSDUG00000018887	cpsf4	100	90.602	ENSXCOG00000016040	cpsf4	100	90.602	Xiphophorus_couchianus
ENSSDUG00000018887	cpsf4	100	90.977	ENSXMAG00000024670	cpsf4	100	90.977	Xiphophorus_maculatus