EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000018895 (Gene tree)
Gene ID: 111233603
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 7174 bases
Position: chrBDQW01000409.1:2381058-2388231
Accession: 111233603
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000026048	zf-U1	PF06220.12	1.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000026516	-	1709	XM_022761459	ENSSDUP00000026048	182 (aa)	XP_022617180	-

Gene Model

Click here to download ENSSDUG00000018895's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000018895's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000018895	snrpc	81	100.000	ENSAPOG00000013907	snrpc	100	100.000	Acanthochromis_polyacanthus
ENSSDUG00000018895	snrpc	81	100.000	ENSAOCG00000021151	snrpc	100	100.000	Amphiprion_ocellaris
ENSSDUG00000018895	snrpc	81	100.000	ENSAPEG00000023221	snrpc	100	100.000	Amphiprion_percula
ENSSDUG00000018895	snrpc	81	100.000	ENSATEG00000025133	snrpc	100	100.000	Anabas_testudineus
ENSSDUG00000018895	snrpc	81	97.987	ENSACLG00000000843	snrpc	100	97.987	Astatotilapia_calliptera
ENSSDUG00000018895	snrpc	100	80.874	ENSCSEG00000016845	snrpc	100	97.315	Cynoglossus_semilaevis
ENSSDUG00000018895	snrpc	81	98.649	ENSCVAG00000014297	snrpc	100	98.649	Cyprinodon_variegatus
ENSSDUG00000018895	snrpc	60	99.083	ENSFHEG00000016667	snrpc	97	99.083	Fundulus_heteroclitus
ENSSDUG00000018895	snrpc	80	97.260	ENSGMOG00000000090	snrpc	100	97.260	Gadus_morhua
ENSSDUG00000018895	snrpc	81	98.649	ENSGAFG00000016115	snrpc	100	98.649	Gambusia_affinis
ENSSDUG00000018895	snrpc	80	99.315	ENSGACG00000004899	snrpc	98	99.315	Gasterosteus_aculeatus
ENSSDUG00000018895	snrpc	81	97.987	ENSHBUG00000011637	snrpc	100	97.987	Haplochromis_burtoni
ENSSDUG00000018895	snrpc	81	96.622	ENSHCOG00000001596	snrpc	100	96.622	Hippocampus_comes
ENSSDUG00000018895	snrpc	81	98.649	ENSKMAG00000016356	snrpc	100	98.649	Kryptolebias_marmoratus
ENSSDUG00000018895	snrpc	81	99.329	ENSLBEG00000023881	snrpc	100	99.329	Labrus_bergylta
ENSSDUG00000018895	snrpc	81	99.324	ENSMAMG00000003857	snrpc	100	99.324	Mastacembelus_armatus
ENSSDUG00000018895	snrpc	81	97.987	ENSMZEG00005002199	snrpc	100	97.987	Maylandia_zebra
ENSSDUG00000018895	snrpc	80	98.621	ENSMMOG00000013149	snrpc	100	98.621	Mola_mola
ENSSDUG00000018895	snrpc	81	97.973	ENSMALG00000001197	snrpc	100	97.973	Monopterus_albus
ENSSDUG00000018895	snrpc	81	97.987	ENSONIG00000014757	snrpc	100	97.987	Oreochromis_niloticus
ENSSDUG00000018895	snrpc	78	97.183	ENSORLG00000007308	snrpc	97	97.183	Oryzias_latipes
ENSSDUG00000018895	snrpc	78	96.503	ENSORLG00020012607	SNRPC	97	96.503	Oryzias_latipes_hni
ENSSDUG00000018895	snrpc	61	97.297	ENSOMEG00000012014	snrpc	69	97.297	Oryzias_melastigma
ENSSDUG00000018895	snrpc	78	65.789	ENSOGAG00000028405	-	67	65.049	Otolemur_garnettii
ENSSDUG00000018895	snrpc	80	96.552	ENSPMGG00000022162	snrpc	100	96.552	Periophthalmus_magnuspinnatus
ENSSDUG00000018895	snrpc	81	98.649	ENSPFOG00000015174	snrpc	100	98.649	Poecilia_formosa
ENSSDUG00000018895	snrpc	81	98.649	ENSPLAG00000012311	snrpc	100	98.649	Poecilia_latipinna
ENSSDUG00000018895	snrpc	81	98.649	ENSPMEG00000010274	snrpc	100	98.649	Poecilia_mexicana
ENSSDUG00000018895	snrpc	84	82.237	ENSPREG00000013017	snrpc	79	84.247	Poecilia_reticulata
ENSSDUG00000018895	snrpc	81	83.019	ENSPNAG00000012799	snrpc	100	73.684	Pygocentrus_nattereri
ENSSDUG00000018895	snrpc	81	100.000	ENSSMAG00000008029	snrpc	100	100.000	Scophthalmus_maximus
ENSSDUG00000018895	snrpc	81	100.000	ENSSLDG00000005034	snrpc	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000018895	snrpc	81	100.000	ENSSPAG00000000914	snrpc	100	100.000	Stegastes_partitus
ENSSDUG00000018895	snrpc	81	97.297	ENSTRUG00000021651	snrpc	100	97.297	Takifugu_rubripes
ENSSDUG00000018895	snrpc	81	88.272	ENSTNIG00000018307	snrpc	100	88.272	Tetraodon_nigroviridis
ENSSDUG00000018895	snrpc	81	98.649	ENSXMAG00000017935	snrpc	100	98.649	Xiphophorus_maculatus