EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000019062 (Gene tree)
Gene ID: 111235356
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 66950 bases
Position: chrBDQW01000478.1:6259470-6326419
Accession: 111235356
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000026293	PPR	PF01535.20	1.9e-39	1	6
ENSSDUP00000026293	PPR	PF01535.20	1.9e-39	2	6
ENSSDUP00000026293	PPR	PF01535.20	1.9e-39	3	6
ENSSDUP00000026293	PPR	PF01535.20	1.9e-39	4	6
ENSSDUP00000026293	PPR	PF01535.20	1.9e-39	5	6
ENSSDUP00000026293	PPR	PF01535.20	1.9e-39	6	6

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000026765	-	5205	XM_022763792	ENSSDUP00000026293	1429 (aa)	XP_022619513	UPI000BBEE45E

Gene Model

Click here to download ENSSDUG00000019062's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000019062's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000019062	lrpprc	99	74.230	ENSAPOG00000016610	lrpprc	100	74.230	Acanthochromis_polyacanthus
ENSSDUG00000019062	lrpprc	96	51.777	ENSAMEG00000005852	LRPPRC	99	51.777	Ailuropoda_melanoleuca
ENSSDUG00000019062	lrpprc	100	70.970	ENSACIG00000009604	lrpprc	100	70.970	Amphilophus_citrinellus
ENSSDUG00000019062	lrpprc	99	74.214	ENSAOCG00000005886	lrpprc	100	74.214	Amphiprion_ocellaris
ENSSDUG00000019062	lrpprc	95	74.359	ENSAPEG00000002937	lrpprc	100	74.359	Amphiprion_percula
ENSSDUG00000019062	lrpprc	91	73.137	ENSATEG00000010555	lrpprc	97	73.333	Anabas_testudineus
ENSSDUG00000019062	lrpprc	94	56.995	ENSACAG00000029278	LRPPRC	99	55.642	Anolis_carolinensis
ENSSDUG00000019062	lrpprc	99	51.023	ENSANAG00000027440	LRPPRC	95	56.597	Aotus_nancymaae
ENSSDUG00000019062	lrpprc	95	69.068	ENSACLG00000023712	lrpprc	92	76.483	Astatotilapia_calliptera
ENSSDUG00000019062	lrpprc	99	51.058	ENSCJAG00000000794	LRPPRC	95	56.870	Callithrix_jacchus
ENSSDUG00000019062	lrpprc	97	52.261	ENSCHIG00000020173	LRPPRC	99	51.933	Capra_hircus
ENSSDUG00000019062	lrpprc	94	41.917	ENSCAPG00000013631	LRPPRC	99	41.917	Cavia_aperea
ENSSDUG00000019062	lrpprc	85	50.164	ENSCPOG00000000204	LRPPRC	99	50.164	Cavia_porcellus
ENSSDUG00000019062	lrpprc	99	51.023	ENSCCAG00000031900	LRPPRC	95	55.725	Cebus_capucinus
ENSSDUG00000019062	lrpprc	99	50.633	ENSCATG00000014187	LRPPRC	98	55.224	Cercocebus_atys
ENSSDUG00000019062	lrpprc	99	49.755	ENSCLAG00000005203	LRPPRC	99	49.755	Chinchilla_lanigera
ENSSDUG00000019062	lrpprc	96	51.555	ENSCSAG00000013233	LRPPRC	99	50.986	Chlorocebus_sabaeus
ENSSDUG00000019062	lrpprc	83	51.831	ENSCHOG00000003631	LRPPRC	84	51.831	Choloepus_hoffmanni
ENSSDUG00000019062	lrpprc	94	49.446	ENSCANG00000034961	LRPPRC	99	59.857	Colobus_angolensis_palliatus
ENSSDUG00000019062	lrpprc	99	50.740	ENSCGRG00001016261	Lrpprc	99	51.092	Cricetulus_griseus_chok1gshd
ENSSDUG00000019062	lrpprc	99	50.740	ENSCGRG00000004072	Lrpprc	99	51.092	Cricetulus_griseus_crigri
ENSSDUG00000019062	lrpprc	99	53.611	ENSCSEG00000003850	lrpprc	96	59.020	Cynoglossus_semilaevis
ENSSDUG00000019062	lrpprc	99	74.157	ENSCVAG00000012967	lrpprc	100	74.157	Cyprinodon_variegatus
ENSSDUG00000019062	lrpprc	99	58.160	ENSDARG00000043970	lrpprc	98	58.160	Danio_rerio
ENSSDUG00000019062	lrpprc	77	41.404	ENSDNOG00000032336	-	95	41.404	Dasypus_novemcinctus
ENSSDUG00000019062	lrpprc	99	51.334	ENSDNOG00000012594	-	99	51.545	Dasypus_novemcinctus
ENSSDUG00000019062	lrpprc	99	51.020	ENSDORG00000012233	Lrpprc	99	51.161	Dipodomys_ordii
ENSSDUG00000019062	lrpprc	99	51.583	ENSETEG00000006657	LRPPRC	99	51.617	Echinops_telfairi
ENSSDUG00000019062	lrpprc	77	53.415	ENSEEUG00000012340	LRPPRC	85	53.415	Erinaceus_europaeus
ENSSDUG00000019062	lrpprc	95	59.501	ENSELUG00000012803	lrpprc	99	59.501	Esox_lucius
ENSSDUG00000019062	lrpprc	99	52.140	ENSFCAG00000013468	LRPPRC	99	52.454	Felis_catus
ENSSDUG00000019062	lrpprc	93	50.112	ENSFALG00000012738	LRPPRC	98	50.112	Ficedula_albicollis
ENSSDUG00000019062	lrpprc	99	48.563	ENSFDAG00000015328	LRPPRC	99	48.563	Fukomys_damarensis
ENSSDUG00000019062	lrpprc	99	72.331	ENSFHEG00000019604	lrpprc	100	72.331	Fundulus_heteroclitus
ENSSDUG00000019062	lrpprc	99	63.952	ENSGMOG00000008337	lrpprc	99	63.952	Gadus_morhua
ENSSDUG00000019062	lrpprc	99	72.753	ENSGAFG00000001455	lrpprc	99	72.753	Gambusia_affinis
ENSSDUG00000019062	lrpprc	99	72.082	ENSGACG00000010679	lrpprc	99	74.465	Gasterosteus_aculeatus
ENSSDUG00000019062	lrpprc	100	76.430	ENSHBUG00000000393	lrpprc	98	76.430	Haplochromis_burtoni
ENSSDUG00000019062	lrpprc	99	49.369	ENSHGLG00000006123	LRPPRC	99	49.369	Heterocephalus_glaber_female
ENSSDUG00000019062	lrpprc	59	48.514	ENSHGLG00100005960	-	99	48.514	Heterocephalus_glaber_male
ENSSDUG00000019062	lrpprc	97	72.182	ENSHCOG00000002107	lrpprc	100	72.182	Hippocampus_comes
ENSSDUG00000019062	lrpprc	99	62.088	ENSIPUG00000009406	lrpprc	98	62.088	Ictalurus_punctatus
ENSSDUG00000019062	lrpprc	99	51.477	ENSSTOG00000011185	LRPPRC	99	51.651	Ictidomys_tridecemlineatus
ENSSDUG00000019062	lrpprc	99	49.648	ENSJJAG00000020475	Lrpprc	99	50.423	Jaculus_jaculus
ENSSDUG00000019062	lrpprc	98	63.572	ENSKMAG00000003287	lrpprc	85	63.572	Kryptolebias_marmoratus
ENSSDUG00000019062	lrpprc	99	64.545	ENSLBEG00000023225	lrpprc	96	72.656	Labrus_bergylta
ENSSDUG00000019062	lrpprc	99	58.073	ENSLACG00000014030	LRPPRC	100	58.073	Latimeria_chalumnae
ENSSDUG00000019062	lrpprc	98	61.064	ENSLOCG00000016390	lrpprc	97	61.064	Lepisosteus_oculatus
ENSSDUG00000019062	lrpprc	99	48.597	ENSLAFG00000008614	LRPPRC	99	48.668	Loxodonta_africana
ENSSDUG00000019062	lrpprc	96	51.515	ENSMFAG00000041560	LRPPRC	99	59.498	Macaca_fascicularis
ENSSDUG00000019062	lrpprc	96	50.687	ENSMMUG00000019841	LRPPRC	99	52.711	Macaca_mulatta
ENSSDUG00000019062	lrpprc	99	50.808	ENSMNEG00000031613	LRPPRC	98	55.224	Macaca_nemestrina
ENSSDUG00000019062	lrpprc	97	65.357	ENSMAMG00000021835	lrpprc	98	65.627	Mastacembelus_armatus
ENSSDUG00000019062	lrpprc	100	76.151	ENSMZEG00005027379	lrpprc	100	76.151	Maylandia_zebra
ENSSDUG00000019062	lrpprc	99	50.845	ENSMAUG00000012118	Lrpprc	99	51.371	Mesocricetus_auratus
ENSSDUG00000019062	lrpprc	99	50.775	ENSMICG00000010486	LRPPRC	98	54.478	Microcebus_murinus
ENSSDUG00000019062	lrpprc	99	51.091	ENSMOCG00000006048	Lrpprc	99	51.091	Microtus_ochrogaster
ENSSDUG00000019062	lrpprc	99	70.162	ENSMMOG00000007830	lrpprc	98	75.047	Mola_mola
ENSSDUG00000019062	lrpprc	94	51.106	ENSMODG00000000648	LRPPRC	99	51.106	Monodelphis_domestica
ENSSDUG00000019062	lrpprc	100	73.082	ENSMALG00000001271	lrpprc	100	73.082	Monopterus_albus
ENSSDUG00000019062	lrpprc	96	52.174	ENSMPUG00000011800	LRPPRC	99	52.984	Mustela_putorius_furo
ENSSDUG00000019062	lrpprc	99	51.479	ENSMLUG00000010575	LRPPRC	99	51.583	Myotis_lucifugus
ENSSDUG00000019062	lrpprc	99	50.774	ENSNGAG00000013069	Lrpprc	99	50.774	Nannospalax_galili
ENSSDUG00000019062	lrpprc	94	68.307	ENSNBRG00000013202	lrpprc	92	76.483	Neolamprologus_brichardi
ENSSDUG00000019062	lrpprc	99	49.754	ENSNLEG00000016782	LRPPRC	95	56.167	Nomascus_leucogenys
ENSSDUG00000019062	lrpprc	88	47.727	ENSOPRG00000016774	LRPPRC	92	46.757	Ochotona_princeps
ENSSDUG00000019062	lrpprc	99	50.635	ENSODEG00000011211	LRPPRC	99	50.635	Octodon_degus
ENSSDUG00000019062	lrpprc	100	76.918	ENSONIG00000000917	lrpprc	100	75.282	Oreochromis_niloticus
ENSSDUG00000019062	lrpprc	72	45.501	ENSOANG00000014670	-	100	45.501	Ornithorhynchus_anatinus
ENSSDUG00000019062	lrpprc	99	51.727	ENSOCUG00000015046	LRPPRC	95	51.938	Oryctolagus_cuniculus
ENSSDUG00000019062	lrpprc	99	68.344	ENSORLG00000004605	lrpprc	97	68.484	Oryzias_latipes
ENSSDUG00000019062	lrpprc	91	71.363	ENSORLG00020012536	lrpprc	99	71.032	Oryzias_latipes_hni
ENSSDUG00000019062	lrpprc	99	66.526	ENSORLG00015018270	lrpprc	100	66.526	Oryzias_latipes_hsok
ENSSDUG00000019062	lrpprc	99	50.917	ENSOGAG00000012798	LRPPRC	99	51.022	Otolemur_garnettii
ENSSDUG00000019062	lrpprc	94	52.919	ENSOARG00000006522	LRPPRC	99	51.930	Ovis_aries
ENSSDUG00000019062	lrpprc	99	48.557	ENSPPAG00000040876	LRPPRC	95	55.725	Pan_paniscus
ENSSDUG00000019062	lrpprc	99	52.070	ENSPPRG00000006578	LRPPRC	99	52.384	Panthera_pardus
ENSSDUG00000019062	lrpprc	95	53.036	ENSPTIG00000000933	LRPPRC	97	53.036	Panthera_tigris_altaica
ENSSDUG00000019062	lrpprc	99	49.718	ENSPTRG00000011880	LRPPRC	95	56.107	Pan_troglodytes
ENSSDUG00000019062	lrpprc	99	50.246	ENSPANG00000020731	LRPPRC	98	55.037	Papio_anubis
ENSSDUG00000019062	lrpprc	88	60.762	ENSPKIG00000022232	lrpprc	97	56.867	Paramormyrops_kingsleyae
ENSSDUG00000019062	lrpprc	60	54.430	ENSPSIG00000006830	-	99	55.121	Pelodiscus_sinensis
ENSSDUG00000019062	lrpprc	66	63.474	ENSPMGG00000016597	lrpprc	97	63.474	Periophthalmus_magnuspinnatus
ENSSDUG00000019062	lrpprc	92	46.606	ENSPMAG00000002147	lrpprc	99	46.606	Petromyzon_marinus
ENSSDUG00000019062	lrpprc	99	71.429	ENSPFOG00000011227	lrpprc	99	71.429	Poecilia_formosa
ENSSDUG00000019062	lrpprc	99	71.358	ENSPLAG00000004018	lrpprc	99	71.358	Poecilia_latipinna
ENSSDUG00000019062	lrpprc	99	71.146	ENSPMEG00000016425	lrpprc	99	71.146	Poecilia_mexicana
ENSSDUG00000019062	lrpprc	99	71.216	ENSPREG00000003662	lrpprc	99	71.216	Poecilia_reticulata
ENSSDUG00000019062	lrpprc	56	47.219	ENSPPYG00000029532	-	99	47.219	Pongo_abelii
ENSSDUG00000019062	lrpprc	82	52.020	ENSPCAG00000001430	LRPPRC	84	52.020	Procavia_capensis
ENSSDUG00000019062	lrpprc	99	49.682	ENSPVAG00000002007	LRPPRC	99	49.682	Pteropus_vampyrus
ENSSDUG00000019062	lrpprc	99	66.271	ENSPNYG00000000756	lrpprc	100	66.271	Pundamilia_nyererei
ENSSDUG00000019062	lrpprc	99	64.677	ENSPNAG00000002895	lrpprc	99	64.677	Pygocentrus_nattereri
ENSSDUG00000019062	lrpprc	99	50.388	ENSRNOG00000005877	Lrpprc	99	50.774	Rattus_norvegicus
ENSSDUG00000019062	lrpprc	96	50.036	ENSRBIG00000031552	LRPPRC	99	49.580	Rhinopithecus_bieti
ENSSDUG00000019062	lrpprc	99	50.882	ENSSBOG00000011807	LRPPRC	95	56.405	Saimiri_boliviensis_boliviensis
ENSSDUG00000019062	lrpprc	94	50.740	ENSSHAG00000018725	LRPPRC	99	50.740	Sarcophilus_harrisii
ENSSDUG00000019062	lrpprc	99	56.453	ENSSFOG00015001042	lrpprc	99	56.453	Scleropages_formosus
ENSSDUG00000019062	lrpprc	99	78.175	ENSSLDG00000023028	lrpprc	100	79.076	Seriola_lalandi_dorsalis
ENSSDUG00000019062	lrpprc	89	48.941	ENSSARG00000000426	LRPPRC	99	48.941	Sorex_araneus
ENSSDUG00000019062	lrpprc	99	67.105	ENSSPAG00000000162	lrpprc	100	67.244	Stegastes_partitus
ENSSDUG00000019062	lrpprc	99	51.295	ENSSSCG00000008452	LRPPRC	99	51.295	Sus_scrofa
ENSSDUG00000019062	lrpprc	93	48.198	ENSTGUG00000003759	LRPPRC	99	48.198	Taeniopygia_guttata
ENSSDUG00000019062	lrpprc	99	71.188	ENSTRUG00000008409	lrpprc	97	71.188	Takifugu_rubripes
ENSSDUG00000019062	lrpprc	99	69.204	ENSTNIG00000007470	lrpprc	100	70.067	Tetraodon_nigroviridis
ENSSDUG00000019062	lrpprc	99	49.296	ENSTTRG00000006403	LRPPRC	99	49.577	Tursiops_truncatus
ENSSDUG00000019062	lrpprc	94	49.556	ENSVPAG00000008993	LRPPRC	99	49.556	Vicugna_pacos
ENSSDUG00000019062	lrpprc	94	57.652	ENSXETG00000009296	lrpprc	96	57.727	Xenopus_tropicalis
ENSSDUG00000019062	lrpprc	98	65.387	ENSXCOG00000013343	lrpprc	95	68.102	Xiphophorus_couchianus
ENSSDUG00000019062	lrpprc	99	72.207	ENSXMAG00000018108	lrpprc	99	72.207	Xiphophorus_maculatus