EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000019147 (Gene tree)
Gene ID: 111231844
Gene Symbol: rad54l
Alias: zgc:56289
Full Name: RAD54 like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 28876 bases
Position: chrBDQW01000319.1:1551414-1580289
Accession: 111231844
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000026420	ResIII	PF04851.15	3.2e-08	1	1
ENSSDUP00000026420	DEAD	PF00270.29	2.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000026892	-	3284	XM_022759098	ENSSDUP00000026420	740 (aa)	XP_022614819	UPI000BBF1150

Gene Model

Click here to download ENSSDUG00000019147's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000019147's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000019147	rad54l	69	34.529	ENSSDUG00000016924	hells	69	34.529
ENSSDUG00000019147	rad54l	68	32.604	ENSSDUG00000019831	chd1l	51	32.604
ENSSDUG00000019147	rad54l	78	46.102	ENSSDUG00000001122	rad54b	61	46.610
ENSSDUG00000019147	rad54l	64	30.214	ENSSDUG00000022338	smarcad1a	60	30.370

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000019147	rad54l	99	80.027	ENSG00000085999	RAD54L	100	86.667	Homo_sapiens
ENSSDUG00000019147	rad54l	99	90.108	ENSAPOG00000011643	rad54l	99	90.108	Acanthochromis_polyacanthus
ENSSDUG00000019147	rad54l	99	79.060	ENSAMEG00000013902	RAD54L	99	79.060	Ailuropoda_melanoleuca
ENSSDUG00000019147	rad54l	99	88.498	ENSACIG00000001939	rad54l	99	88.498	Amphilophus_citrinellus
ENSSDUG00000019147	rad54l	99	93.505	ENSAOCG00000017576	rad54l	100	93.505	Amphiprion_ocellaris
ENSSDUG00000019147	rad54l	96	93.557	ENSAPEG00000020658	rad54l	99	93.557	Amphiprion_percula
ENSSDUG00000019147	rad54l	95	93.732	ENSATEG00000006767	rad54l	100	93.732	Anabas_testudineus
ENSSDUG00000019147	rad54l	94	83.119	ENSAPLG00000006389	RAD54L	99	83.119	Anas_platyrhynchos
ENSSDUG00000019147	rad54l	99	81.427	ENSACAG00000002312	RAD54L	99	81.427	Anolis_carolinensis
ENSSDUG00000019147	rad54l	99	80.027	ENSANAG00000035439	RAD54L	99	80.027	Aotus_nancymaae
ENSSDUG00000019147	rad54l	100	88.784	ENSACLG00000018711	rad54l	100	88.784	Astatotilapia_calliptera
ENSSDUG00000019147	rad54l	100	86.792	ENSAMXG00000012777	rad54l	100	86.792	Astyanax_mexicanus
ENSSDUG00000019147	rad54l	99	80.054	ENSBTAG00000019901	RAD54L	99	80.054	Bos_taurus
ENSSDUG00000019147	rad54l	93	58.442	WBGene00004298	rad-54	84	58.442	Caenorhabditis_elegans
ENSSDUG00000019147	rad54l	97	80.663	ENSCJAG00000021080	RAD54L	91	81.206	Callithrix_jacchus
ENSSDUG00000019147	rad54l	99	79.088	ENSCAFG00000004272	RAD54L	99	79.088	Canis_familiaris
ENSSDUG00000019147	rad54l	99	79.060	ENSCAFG00020015066	RAD54L	99	79.060	Canis_lupus_dingo
ENSSDUG00000019147	rad54l	99	79.893	ENSCHIG00000020118	RAD54L	99	79.893	Capra_hircus
ENSSDUG00000019147	rad54l	99	79.920	ENSTSYG00000002032	RAD54L	99	79.920	Carlito_syrichta
ENSSDUG00000019147	rad54l	99	80.563	ENSCPOG00000006768	RAD54L	99	80.563	Cavia_porcellus
ENSSDUG00000019147	rad54l	99	80.429	ENSCCAG00000025783	RAD54L	99	80.429	Cebus_capucinus
ENSSDUG00000019147	rad54l	99	80.027	ENSCATG00000030589	RAD54L	99	80.027	Cercocebus_atys
ENSSDUG00000019147	rad54l	99	80.295	ENSCLAG00000004645	RAD54L	99	80.295	Chinchilla_lanigera
ENSSDUG00000019147	rad54l	99	79.893	ENSCSAG00000001229	RAD54L	99	79.893	Chlorocebus_sabaeus
ENSSDUG00000019147	rad54l	99	81.292	ENSCPBG00000005675	RAD54L	99	81.292	Chrysemys_picta_bellii
ENSSDUG00000019147	rad54l	100	62.887	ENSCING00000024456	-	100	62.806	Ciona_intestinalis
ENSSDUG00000019147	rad54l	100	63.838	ENSCSAVG00000010859	-	100	63.838	Ciona_savignyi
ENSSDUG00000019147	rad54l	99	79.893	ENSCANG00000034891	RAD54L	99	79.893	Colobus_angolensis_palliatus
ENSSDUG00000019147	rad54l	99	79.704	ENSCGRG00001014807	Rad54l	99	79.704	Cricetulus_griseus_chok1gshd
ENSSDUG00000019147	rad54l	99	79.704	ENSCGRG00000016038	Rad54l	99	79.704	Cricetulus_griseus_crigri
ENSSDUG00000019147	rad54l	99	88.618	ENSCSEG00000001983	rad54l	99	88.618	Cynoglossus_semilaevis
ENSSDUG00000019147	rad54l	87	88.446	ENSCVAG00000019561	rad54l	100	88.446	Cyprinodon_variegatus
ENSSDUG00000019147	rad54l	100	86.622	ENSDARG00000018623	rad54l	100	86.622	Danio_rerio
ENSSDUG00000019147	rad54l	99	79.357	ENSDNOG00000003395	RAD54L	99	79.357	Dasypus_novemcinctus
ENSSDUG00000019147	rad54l	99	72.667	ENSDORG00000002632	Rad54l	99	72.667	Dipodomys_ordii
ENSSDUG00000019147	rad54l	99	53.907	FBgn0002989	okr	95	53.907	Drosophila_melanogaster
ENSSDUG00000019147	rad54l	78	78.384	ENSETEG00000000550	RAD54L	78	78.384	Echinops_telfairi
ENSSDUG00000019147	rad54l	99	79.195	ENSEASG00005004511	RAD54L	99	79.463	Equus_asinus_asinus
ENSSDUG00000019147	rad54l	99	79.625	ENSECAG00000008760	RAD54L	99	79.893	Equus_caballus
ENSSDUG00000019147	rad54l	99	76.676	ENSEEUG00000008113	RAD54L	99	76.676	Erinaceus_europaeus
ENSSDUG00000019147	rad54l	100	88.725	ENSELUG00000002295	rad54l	100	88.725	Esox_lucius
ENSSDUG00000019147	rad54l	99	78.820	ENSFCAG00000003444	RAD54L	99	78.820	Felis_catus
ENSSDUG00000019147	rad54l	99	80.619	ENSFALG00000009480	RAD54L	99	80.619	Ficedula_albicollis
ENSSDUG00000019147	rad54l	99	79.759	ENSFDAG00000007806	RAD54L	99	79.759	Fukomys_damarensis
ENSSDUG00000019147	rad54l	65	82.952	ENSFHEG00000009824	rad54l	83	82.952	Fundulus_heteroclitus
ENSSDUG00000019147	rad54l	99	86.062	ENSGMOG00000014568	rad54l	100	86.062	Gadus_morhua
ENSSDUG00000019147	rad54l	99	80.863	ENSGALG00000010356	RAD54L	92	80.863	Gallus_gallus
ENSSDUG00000019147	rad54l	91	87.685	ENSGAFG00000011110	rad54l	100	87.685	Gambusia_affinis
ENSSDUG00000019147	rad54l	100	91.768	ENSGACG00000003111	rad54l	98	91.768	Gasterosteus_aculeatus
ENSSDUG00000019147	rad54l	99	80.863	ENSGAGG00000014089	RAD54L	96	80.863	Gopherus_agassizii
ENSSDUG00000019147	rad54l	99	79.893	ENSGGOG00000010602	RAD54L	99	79.893	Gorilla_gorilla
ENSSDUG00000019147	rad54l	100	88.919	ENSHBUG00000007793	rad54l	100	88.919	Haplochromis_burtoni
ENSSDUG00000019147	rad54l	99	80.027	ENSHGLG00000000753	RAD54L	99	80.027	Heterocephalus_glaber_female
ENSSDUG00000019147	rad54l	99	79.893	ENSHGLG00100016987	RAD54L	99	79.893	Heterocephalus_glaber_male
ENSSDUG00000019147	rad54l	100	85.195	ENSIPUG00000015999	rad54l	100	87.948	Ictalurus_punctatus
ENSSDUG00000019147	rad54l	99	78.954	ENSSTOG00000029125	RAD54L	99	78.954	Ictidomys_tridecemlineatus
ENSSDUG00000019147	rad54l	99	67.292	ENSJJAG00000000235	-	99	67.158	Jaculus_jaculus
ENSSDUG00000019147	rad54l	100	88.243	ENSKMAG00000009944	rad54l	100	88.243	Kryptolebias_marmoratus
ENSSDUG00000019147	rad54l	99	92.130	ENSLBEG00000014617	rad54l	99	92.130	Labrus_bergylta
ENSSDUG00000019147	rad54l	100	86.406	ENSLOCG00000004144	rad54l	100	87.964	Lepisosteus_oculatus
ENSSDUG00000019147	rad54l	99	79.463	ENSLAFG00000007583	RAD54L	99	79.866	Loxodonta_africana
ENSSDUG00000019147	rad54l	99	80.161	ENSMFAG00000031241	RAD54L	99	80.161	Macaca_fascicularis
ENSSDUG00000019147	rad54l	99	80.161	ENSMMUG00000011568	RAD54L	99	80.161	Macaca_mulatta
ENSSDUG00000019147	rad54l	99	79.893	ENSMNEG00000038562	RAD54L	99	79.893	Macaca_nemestrina
ENSSDUG00000019147	rad54l	99	80.027	ENSMLEG00000038145	RAD54L	99	80.027	Mandrillus_leucophaeus
ENSSDUG00000019147	rad54l	99	89.702	ENSMAMG00000022180	rad54l	99	91.728	Mastacembelus_armatus
ENSSDUG00000019147	rad54l	100	88.649	ENSMZEG00005018081	rad54l	100	88.649	Maylandia_zebra
ENSSDUG00000019147	rad54l	99	80.972	ENSMGAG00000010634	RAD54L	99	80.972	Meleagris_gallopavo
ENSSDUG00000019147	rad54l	99	79.973	ENSMAUG00000020076	Rad54l	99	79.973	Mesocricetus_auratus
ENSSDUG00000019147	rad54l	99	80.563	ENSMICG00000003266	RAD54L	99	80.563	Microcebus_murinus
ENSSDUG00000019147	rad54l	99	80.242	ENSMOCG00000001778	Rad54l	99	80.242	Microtus_ochrogaster
ENSSDUG00000019147	rad54l	99	88.140	ENSMALG00000021148	rad54l	99	88.140	Monopterus_albus
ENSSDUG00000019147	rad54l	99	75.489	MGP_CAROLIEiJ_G0026325	Rad54l	99	75.489	Mus_caroli
ENSSDUG00000019147	rad54l	99	79.625	ENSMUSG00000028702	Rad54l	99	79.625	Mus_musculus
ENSSDUG00000019147	rad54l	99	79.597	MGP_PahariEiJ_G0028657	Rad54l	99	79.597	Mus_pahari
ENSSDUG00000019147	rad54l	99	79.625	MGP_SPRETEiJ_G0027297	Rad54l	99	79.625	Mus_spretus
ENSSDUG00000019147	rad54l	99	79.088	ENSMPUG00000012883	RAD54L	99	79.088	Mustela_putorius_furo
ENSSDUG00000019147	rad54l	99	79.866	ENSMLUG00000003763	RAD54L	99	79.866	Myotis_lucifugus
ENSSDUG00000019147	rad54l	99	79.625	ENSNGAG00000024213	Rad54l	99	79.625	Nannospalax_galili
ENSSDUG00000019147	rad54l	99	80.295	ENSNLEG00000016548	RAD54L	99	80.295	Nomascus_leucogenys
ENSSDUG00000019147	rad54l	91	79.377	ENSMEUG00000006793	RAD54L	100	79.377	Notamacropus_eugenii
ENSSDUG00000019147	rad54l	90	81.533	ENSOPRG00000016016	RAD54L	90	81.533	Ochotona_princeps
ENSSDUG00000019147	rad54l	99	80.831	ENSODEG00000008519	RAD54L	99	80.831	Octodon_degus
ENSSDUG00000019147	rad54l	100	88.919	ENSONIG00000007659	rad54l	100	88.919	Oreochromis_niloticus
ENSSDUG00000019147	rad54l	99	80.161	ENSOCUG00000005229	RAD54L	99	80.161	Oryctolagus_cuniculus
ENSSDUG00000019147	rad54l	100	85.946	ENSORLG00000002958	rad54l	100	86.216	Oryzias_latipes
ENSSDUG00000019147	rad54l	99	86.604	ENSORLG00020006554	rad54l	99	89.706	Oryzias_latipes_hni
ENSSDUG00000019147	rad54l	100	85.946	ENSORLG00015002907	rad54l	100	86.486	Oryzias_latipes_hsok
ENSSDUG00000019147	rad54l	99	87.009	ENSOMEG00000007770	rad54l	99	87.009	Oryzias_melastigma
ENSSDUG00000019147	rad54l	99	79.947	ENSOARG00000002264	RAD54L	99	79.947	Ovis_aries
ENSSDUG00000019147	rad54l	99	79.893	ENSPPAG00000031222	RAD54L	99	79.893	Pan_paniscus
ENSSDUG00000019147	rad54l	99	78.686	ENSPPRG00000010317	RAD54L	99	78.686	Panthera_pardus
ENSSDUG00000019147	rad54l	99	78.686	ENSPTIG00000012200	RAD54L	99	78.686	Panthera_tigris_altaica
ENSSDUG00000019147	rad54l	99	79.893	ENSPTRG00000000689	RAD54L	99	79.893	Pan_troglodytes
ENSSDUG00000019147	rad54l	99	80.027	ENSPANG00000016295	RAD54L	99	80.027	Papio_anubis
ENSSDUG00000019147	rad54l	99	78.320	ENSPKIG00000016172	rad54l	99	78.320	Paramormyrops_kingsleyae
ENSSDUG00000019147	rad54l	99	81.335	ENSPSIG00000003258	RAD54L	99	81.335	Pelodiscus_sinensis
ENSSDUG00000019147	rad54l	99	80.514	ENSPMGG00000016335	rad54l	99	80.514	Periophthalmus_magnuspinnatus
ENSSDUG00000019147	rad54l	99	79.973	ENSPEMG00000011422	Rad54l	99	79.973	Peromyscus_maniculatus_bairdii
ENSSDUG00000019147	rad54l	99	71.294	ENSPMAG00000007719	rad54l	99	71.294	Petromyzon_marinus
ENSSDUG00000019147	rad54l	100	80.376	ENSPCIG00000029032	RAD54L	100	80.376	Phascolarctos_cinereus
ENSSDUG00000019147	rad54l	86	89.623	ENSPFOG00000013732	rad54l	100	89.623	Poecilia_formosa
ENSSDUG00000019147	rad54l	82	87.175	ENSPLAG00000023416	rad54l	99	87.175	Poecilia_latipinna
ENSSDUG00000019147	rad54l	91	87.685	ENSPMEG00000008299	rad54l	100	87.685	Poecilia_mexicana
ENSSDUG00000019147	rad54l	100	86.892	ENSPREG00000019955	rad54l	100	86.892	Poecilia_reticulata
ENSSDUG00000019147	rad54l	99	67.738	ENSPPYG00000001398	RAD54L	99	67.738	Pongo_abelii
ENSSDUG00000019147	rad54l	79	79.612	ENSPCAG00000005323	RAD54L	80	79.612	Procavia_capensis
ENSSDUG00000019147	rad54l	99	80.027	ENSPCOG00000015423	RAD54L	99	80.027	Propithecus_coquereli
ENSSDUG00000019147	rad54l	99	83.690	ENSPNYG00000002942	rad54l	99	83.690	Pundamilia_nyererei
ENSSDUG00000019147	rad54l	100	86.775	ENSPNAG00000012483	rad54l	100	86.775	Pygocentrus_nattereri
ENSSDUG00000019147	rad54l	99	79.491	ENSRNOG00000013148	Rad54l	99	79.491	Rattus_norvegicus
ENSSDUG00000019147	rad54l	99	80.161	ENSRBIG00000043495	RAD54L	99	80.161	Rhinopithecus_bieti
ENSSDUG00000019147	rad54l	99	80.027	ENSRROG00000020844	RAD54L	99	80.027	Rhinopithecus_roxellana
ENSSDUG00000019147	rad54l	81	49.534	YGL163C	RAD54	71	49.845	Saccharomyces_cerevisiae
ENSSDUG00000019147	rad54l	99	80.295	ENSSBOG00000024672	RAD54L	99	80.295	Saimiri_boliviensis_boliviensis
ENSSDUG00000019147	rad54l	100	79.893	ENSSHAG00000000110	RAD54L	100	79.893	Sarcophilus_harrisii
ENSSDUG00000019147	rad54l	100	98.514	ENSSLDG00000012330	rad54l	100	98.514	Seriola_lalandi_dorsalis
ENSSDUG00000019147	rad54l	84	79.294	ENSSARG00000006689	RAD54L	100	79.294	Sorex_araneus
ENSSDUG00000019147	rad54l	99	91.746	ENSSPAG00000011016	rad54l	100	91.746	Stegastes_partitus
ENSSDUG00000019147	rad54l	99	80.027	ENSSSCG00000003905	RAD54L	99	80.027	Sus_scrofa
ENSSDUG00000019147	rad54l	99	80.754	ENSTGUG00000008233	RAD54L	99	80.888	Taeniopygia_guttata
ENSSDUG00000019147	rad54l	99	85.135	ENSTRUG00000008410	rad54l	99	85.135	Takifugu_rubripes
ENSSDUG00000019147	rad54l	99	82.003	ENSTNIG00000004716	rad54l	99	82.003	Tetraodon_nigroviridis
ENSSDUG00000019147	rad54l	99	74.531	ENSTTRG00000006315	RAD54L	99	74.531	Tursiops_truncatus
ENSSDUG00000019147	rad54l	99	78.947	ENSUAMG00000011824	RAD54L	99	78.947	Ursus_americanus
ENSSDUG00000019147	rad54l	99	77.868	ENSUMAG00000023603	RAD54L	99	77.868	Ursus_maritimus
ENSSDUG00000019147	rad54l	99	79.088	ENSVVUG00000007201	RAD54L	99	79.088	Vulpes_vulpes
ENSSDUG00000019147	rad54l	96	76.858	ENSXETG00000004369	rad54l	99	76.858	Xenopus_tropicalis
ENSSDUG00000019147	rad54l	55	86.275	ENSXCOG00000016028	rad54l	83	88.889	Xiphophorus_couchianus