EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000019269 (Gene tree)
Gene ID: 111223968
Gene Symbol: r3hdm2
Alias: -
Full Name: R3H domain containing 2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 30886 bases
Position: chrBDQW01000121.1:2271901-2302786
Accession: 111223968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000026743	R3H	PF01424.22	7.6e-11	1	1
ENSSDUP00000026681	R3H	PF01424.22	8.8e-11	1	1
ENSSDUP00000026635	R3H	PF01424.22	9.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000027112	-	4760	XM_022748295	ENSSDUP00000026635	1054 (aa)	XP_022604016	-
ENSSDUT00000027220	-	2736	-	ENSSDUP00000026743	911 (aa)	-	-
ENSSDUT00000027158	-	4661	XM_022748291	ENSSDUP00000026681	1021 (aa)	XP_022604012	-

Gene Model

Click here to download ENSSDUG00000019269's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000019269's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000019269	r3hdm2	86	50.585	ENSSDUG00000010749	r3hdm1	85	52.785

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000019269	r3hdm2	100	68.035	ENSG00000179912	R3HDM2	89	78.656	Homo_sapiens
ENSSDUG00000019269	r3hdm2	50	38.420	ENSAPOG00000021873	-	70	39.394	Acanthochromis_polyacanthus
ENSSDUG00000019269	r3hdm2	100	97.173	ENSAPOG00000020341	r3hdm2	100	97.173	Acanthochromis_polyacanthus
ENSSDUG00000019269	r3hdm2	95	67.245	ENSAMEG00000004812	R3HDM2	99	64.679	Ailuropoda_melanoleuca
ENSSDUG00000019269	r3hdm2	99	93.392	ENSACIG00000016146	r3hdm2	98	93.172	Amphilophus_citrinellus
ENSSDUG00000019269	r3hdm2	100	97.356	ENSAOCG00000023694	r3hdm2	100	97.356	Amphiprion_ocellaris
ENSSDUG00000019269	r3hdm2	100	97.262	ENSAPEG00000008851	r3hdm2	100	97.262	Amphiprion_percula
ENSSDUG00000019269	r3hdm2	100	95.631	ENSATEG00000025024	r3hdm2	100	95.631	Anabas_testudineus
ENSSDUG00000019269	r3hdm2	100	56.955	ENSAPLG00000004298	R3HDM2	93	68.545	Anas_platyrhynchos
ENSSDUG00000019269	r3hdm2	100	62.933	ENSACAG00000006388	R3HDM2	99	62.216	Anolis_carolinensis
ENSSDUG00000019269	r3hdm2	100	67.132	ENSANAG00000025397	-	99	65.861	Aotus_nancymaae
ENSSDUG00000019269	r3hdm2	100	64.089	ENSANAG00000031310	-	98	63.142	Aotus_nancymaae
ENSSDUG00000019269	r3hdm2	100	95.399	ENSACLG00000019106	r3hdm2	100	95.399	Astatotilapia_calliptera
ENSSDUG00000019269	r3hdm2	100	71.684	ENSAMXG00000017180	r3hdm2	99	73.291	Astyanax_mexicanus
ENSSDUG00000019269	r3hdm2	100	64.792	ENSBTAG00000018361	R3HDM2	99	65.858	Bos_taurus
ENSSDUG00000019269	r3hdm2	100	67.711	ENSCJAG00000007365	R3HDM2	99	65.861	Callithrix_jacchus
ENSSDUG00000019269	r3hdm2	100	65.866	ENSCAFG00000000215	R3HDM2	99	66.280	Canis_familiaris
ENSSDUG00000019269	r3hdm2	100	68.216	ENSCAFG00020023713	R3HDM2	99	66.376	Canis_lupus_dingo
ENSSDUG00000019269	r3hdm2	100	66.175	ENSCHIG00000014022	R3HDM2	99	66.343	Capra_hircus
ENSSDUG00000019269	r3hdm2	100	67.641	ENSTSYG00000001449	R3HDM2	99	65.604	Carlito_syrichta
ENSSDUG00000019269	r3hdm2	100	65.586	ENSCPOG00000009217	R3HDM2	99	65.789	Cavia_porcellus
ENSSDUG00000019269	r3hdm2	88	67.857	ENSCCAG00000026083	R3HDM2	99	67.220	Cebus_capucinus
ENSSDUG00000019269	r3hdm2	100	67.819	ENSCATG00000036929	R3HDM2	99	65.861	Cercocebus_atys
ENSSDUG00000019269	r3hdm2	100	65.654	ENSCLAG00000011997	R3HDM2	99	66.259	Chinchilla_lanigera
ENSSDUG00000019269	r3hdm2	99	66.698	ENSCSAG00000004911	R3HDM2	99	66.479	Chlorocebus_sabaeus
ENSSDUG00000019269	r3hdm2	73	63.673	ENSCHOG00000005636	R3HDM2	89	65.936	Choloepus_hoffmanni
ENSSDUG00000019269	r3hdm2	100	61.753	ENSCPBG00000013922	R3HDM2	99	63.419	Chrysemys_picta_bellii
ENSSDUG00000019269	r3hdm2	100	67.351	ENSCANG00000043807	R3HDM2	99	65.764	Colobus_angolensis_palliatus
ENSSDUG00000019269	r3hdm2	100	64.503	ENSCGRG00001017324	R3hdm2	99	63.619	Cricetulus_griseus_chok1gshd
ENSSDUG00000019269	r3hdm2	100	65.462	ENSCGRG00000003862	R3hdm2	99	63.527	Cricetulus_griseus_crigri
ENSSDUG00000019269	r3hdm2	100	92.777	ENSCSEG00000010925	r3hdm2	100	92.781	Cynoglossus_semilaevis
ENSSDUG00000019269	r3hdm2	100	90.132	ENSCVAG00000009058	r3hdm2	100	89.915	Cyprinodon_variegatus
ENSSDUG00000019269	r3hdm2	99	70.681	ENSDARG00000102610	r3hdm2	99	75.155	Danio_rerio
ENSSDUG00000019269	r3hdm2	99	65.572	ENSDNOG00000015033	R3HDM2	100	66.667	Dasypus_novemcinctus
ENSSDUG00000019269	r3hdm2	100	65.887	ENSDORG00000011462	R3hdm2	98	65.817	Dipodomys_ordii
ENSSDUG00000019269	r3hdm2	100	65.317	ENSEASG00005007091	R3HDM2	99	66.167	Equus_asinus_asinus
ENSSDUG00000019269	r3hdm2	100	65.589	ENSECAG00000003157	R3HDM2	99	66.073	Equus_caballus
ENSSDUG00000019269	r3hdm2	100	80.328	ENSELUG00000015969	r3hdm2	100	79.636	Esox_lucius
ENSSDUG00000019269	r3hdm2	100	67.819	ENSFCAG00000000192	R3HDM2	99	63.356	Felis_catus
ENSSDUG00000019269	r3hdm2	81	63.409	ENSFALG00000000255	R3HDM2	99	60.065	Ficedula_albicollis
ENSSDUG00000019269	r3hdm2	100	65.236	ENSFDAG00000019385	R3HDM2	99	65.511	Fukomys_damarensis
ENSSDUG00000019269	r3hdm2	100	90.807	ENSFHEG00000016484	r3hdm2	100	90.564	Fundulus_heteroclitus
ENSSDUG00000019269	r3hdm2	51	37.372	ENSFHEG00000007936	-	67	39.203	Fundulus_heteroclitus
ENSSDUG00000019269	r3hdm2	95	82.779	ENSGMOG00000007961	r3hdm2	100	82.192	Gadus_morhua
ENSSDUG00000019269	r3hdm2	99	65.554	ENSGALG00000043736	R3HDM2	99	64.365	Gallus_gallus
ENSSDUG00000019269	r3hdm2	100	91.902	ENSGAFG00000013887	r3hdm2	100	90.269	Gambusia_affinis
ENSSDUG00000019269	r3hdm2	95	89.561	ENSGACG00000006442	r3hdm2	100	90.546	Gasterosteus_aculeatus
ENSSDUG00000019269	r3hdm2	100	61.803	ENSGAGG00000017797	R3HDM2	99	62.382	Gopherus_agassizii
ENSSDUG00000019269	r3hdm2	100	67.819	ENSGGOG00000015007	R3HDM2	99	65.861	Gorilla_gorilla
ENSSDUG00000019269	r3hdm2	95	60.889	ENSHGLG00000010421	-	97	60.455	Heterocephalus_glaber_female
ENSSDUG00000019269	r3hdm2	100	65.539	ENSHGLG00000010434	-	99	65.789	Heterocephalus_glaber_female
ENSSDUG00000019269	r3hdm2	97	59.444	ENSHGLG00100018871	-	98	59.077	Heterocephalus_glaber_male
ENSSDUG00000019269	r3hdm2	100	65.104	ENSHGLG00100004183	-	99	65.695	Heterocephalus_glaber_male
ENSSDUG00000019269	r3hdm2	100	90.038	ENSHCOG00000001142	r3hdm2	97	89.564	Hippocampus_comes
ENSSDUG00000019269	r3hdm2	100	76.802	ENSIPUG00000023873	r3hdm2	100	76.937	Ictalurus_punctatus
ENSSDUG00000019269	r3hdm2	100	65.635	ENSSTOG00000013424	R3HDM2	99	60.940	Ictidomys_tridecemlineatus
ENSSDUG00000019269	r3hdm2	100	65.848	ENSJJAG00000010001	R3hdm2	99	65.478	Jaculus_jaculus
ENSSDUG00000019269	r3hdm2	100	92.944	ENSKMAG00000012695	r3hdm2	97	92.380	Kryptolebias_marmoratus
ENSSDUG00000019269	r3hdm2	100	94.262	ENSLBEG00000013115	r3hdm2	96	93.227	Labrus_bergylta
ENSSDUG00000019269	r3hdm2	50	40.107	ENSLBEG00000002779	-	59	44.385	Labrus_bergylta
ENSSDUG00000019269	r3hdm2	100	61.776	ENSLACG00000019064	r3hdm2	100	64.217	Latimeria_chalumnae
ENSSDUG00000019269	r3hdm2	99	76.167	ENSLOCG00000005976	r3hdm2	99	76.556	Lepisosteus_oculatus
ENSSDUG00000019269	r3hdm2	99	64.444	ENSLAFG00000006510	R3HDM2	99	65.306	Loxodonta_africana
ENSSDUG00000019269	r3hdm2	100	68.035	ENSMFAG00000036385	R3HDM2	99	65.957	Macaca_fascicularis
ENSSDUG00000019269	r3hdm2	100	68.035	ENSMMUG00000021789	R3HDM2	99	65.957	Macaca_mulatta
ENSSDUG00000019269	r3hdm2	100	67.347	ENSMNEG00000025314	R3HDM2	99	65.957	Macaca_nemestrina
ENSSDUG00000019269	r3hdm2	100	67.927	ENSMLEG00000028915	R3HDM2	99	65.957	Mandrillus_leucophaeus
ENSSDUG00000019269	r3hdm2	100	95.951	ENSMAMG00000009793	r3hdm2	100	95.951	Mastacembelus_armatus
ENSSDUG00000019269	r3hdm2	100	95.940	ENSMZEG00005007319	r3hdm2	100	95.940	Maylandia_zebra
ENSSDUG00000019269	r3hdm2	100	67.568	ENSMICG00000012389	R3HDM2	99	65.955	Microcebus_murinus
ENSSDUG00000019269	r3hdm2	99	65.352	ENSMOCG00000014425	R3hdm2	99	63.620	Microtus_ochrogaster
ENSSDUG00000019269	r3hdm2	100	90.608	ENSMMOG00000007448	r3hdm2	98	89.114	Mola_mola
ENSSDUG00000019269	r3hdm2	95	80.412	ENSMALG00000010211	r3hdm2	98	87.464	Monopterus_albus
ENSSDUG00000019269	r3hdm2	100	65.711	MGP_CAROLIEiJ_G0015896	R3hdm2	99	65.698	Mus_caroli
ENSSDUG00000019269	r3hdm2	100	65.817	ENSMUSG00000025404	R3hdm2	99	65.569	Mus_musculus
ENSSDUG00000019269	r3hdm2	100	64.188	MGP_PahariEiJ_G0031189	R3hdm2	99	65.475	Mus_pahari
ENSSDUG00000019269	r3hdm2	100	66.030	MGP_SPRETEiJ_G0016722	R3hdm2	99	65.757	Mus_spretus
ENSSDUG00000019269	r3hdm2	98	63.824	ENSMPUG00000001818	R3HDM2	96	63.873	Mustela_putorius_furo
ENSSDUG00000019269	r3hdm2	100	61.768	ENSMLUG00000004980	R3HDM2	99	64.820	Myotis_lucifugus
ENSSDUG00000019269	r3hdm2	99	66.008	ENSNGAG00000018800	R3hdm2	99	66.259	Nannospalax_galili
ENSSDUG00000019269	r3hdm2	100	94.402	ENSNBRG00000004483	r3hdm2	99	93.963	Neolamprologus_brichardi
ENSSDUG00000019269	r3hdm2	100	67.132	ENSNLEG00000017351	R3HDM2	99	65.861	Nomascus_leucogenys
ENSSDUG00000019269	r3hdm2	100	54.708	ENSMEUG00000008588	R3HDM2	99	55.392	Notamacropus_eugenii
ENSSDUG00000019269	r3hdm2	100	62.487	ENSOPRG00000013670	R3HDM2	99	59.651	Ochotona_princeps
ENSSDUG00000019269	r3hdm2	100	93.249	ENSONIG00000005075	r3hdm2	100	92.871	Oreochromis_niloticus
ENSSDUG00000019269	r3hdm2	99	64.630	ENSOCUG00000013258	R3HDM2	99	65.065	Oryctolagus_cuniculus
ENSSDUG00000019269	r3hdm2	100	90.263	ENSORLG00000005502	r3hdm2	100	88.437	Oryzias_latipes
ENSSDUG00000019269	r3hdm2	100	90.472	ENSORLG00020017069	r3hdm2	100	89.934	Oryzias_latipes_hni
ENSSDUG00000019269	r3hdm2	100	90.566	ENSORLG00015012735	r3hdm2	100	90.028	Oryzias_latipes_hsok
ENSSDUG00000019269	r3hdm2	99	88.229	ENSOMEG00000018079	r3hdm2	99	84.329	Oryzias_melastigma
ENSSDUG00000019269	r3hdm2	96	58.492	ENSOGAG00000027966	-	99	58.065	Otolemur_garnettii
ENSSDUG00000019269	r3hdm2	100	63.571	ENSOGAG00000012055	R3HDM2	99	63.483	Otolemur_garnettii
ENSSDUG00000019269	r3hdm2	100	65.344	ENSOARG00000006929	R3HDM2	99	65.957	Ovis_aries
ENSSDUG00000019269	r3hdm2	100	68.035	ENSPPAG00000034395	R3HDM2	99	66.054	Pan_paniscus
ENSSDUG00000019269	r3hdm2	100	67.819	ENSPPRG00000009240	R3HDM2	99	65.188	Panthera_pardus
ENSSDUG00000019269	r3hdm2	100	67.819	ENSPTIG00000008752	R3HDM2	99	65.188	Panthera_tigris_altaica
ENSSDUG00000019269	r3hdm2	100	68.143	ENSPTRG00000046457	R3HDM2	99	66.054	Pan_troglodytes
ENSSDUG00000019269	r3hdm2	100	67.784	ENSPANG00000024002	R3HDM2	97	67.882	Papio_anubis
ENSSDUG00000019269	r3hdm2	100	81.297	ENSPKIG00000003171	r3hdm2	100	81.038	Paramormyrops_kingsleyae
ENSSDUG00000019269	r3hdm2	63	56.278	ENSPSIG00000006954	R3HDM2	99	54.932	Pelodiscus_sinensis
ENSSDUG00000019269	r3hdm2	99	88.474	ENSPMGG00000007061	r3hdm2	99	88.075	Periophthalmus_magnuspinnatus
ENSSDUG00000019269	r3hdm2	99	65.042	ENSPEMG00000015964	R3hdm2	99	64.817	Peromyscus_maniculatus_bairdii
ENSSDUG00000019269	r3hdm2	100	64.376	ENSPCIG00000023841	R3HDM2	99	64.632	Phascolarctos_cinereus
ENSSDUG00000019269	r3hdm2	100	88.661	ENSPFOG00000006077	r3hdm2	92	91.453	Poecilia_formosa
ENSSDUG00000019269	r3hdm2	100	91.823	ENSPLAG00000002971	r3hdm2	100	91.989	Poecilia_latipinna
ENSSDUG00000019269	r3hdm2	100	91.823	ENSPMEG00000005330	r3hdm2	100	91.989	Poecilia_mexicana
ENSSDUG00000019269	r3hdm2	100	91.353	ENSPREG00000008424	r3hdm2	100	91.517	Poecilia_reticulata
ENSSDUG00000019269	r3hdm2	97	64.309	ENSPPYG00000004685	R3HDM2	80	61.265	Pongo_abelii
ENSSDUG00000019269	r3hdm2	90	81.159	ENSPCAG00000014642	R3HDM2	90	82.558	Procavia_capensis
ENSSDUG00000019269	r3hdm2	100	68.000	ENSPCOG00000013201	R3HDM2	99	66.052	Propithecus_coquereli
ENSSDUG00000019269	r3hdm2	99	64.537	ENSPVAG00000003967	R3HDM2	99	64.700	Pteropus_vampyrus
ENSSDUG00000019269	r3hdm2	100	86.378	ENSPNYG00000013479	r3hdm2	100	87.888	Pundamilia_nyererei
ENSSDUG00000019269	r3hdm2	100	75.716	ENSPNAG00000017473	r3hdm2	100	77.675	Pygocentrus_nattereri
ENSSDUG00000019269	r3hdm2	100	63.514	ENSRNOG00000007801	R3hdm2	99	64.597	Rattus_norvegicus
ENSSDUG00000019269	r3hdm2	99	64.149	ENSRBIG00000037403	R3HDM2	99	64.023	Rhinopithecus_bieti
ENSSDUG00000019269	r3hdm2	100	67.132	ENSRROG00000022271	R3HDM2	99	65.861	Rhinopithecus_roxellana
ENSSDUG00000019269	r3hdm2	100	67.711	ENSSBOG00000023547	R3HDM2	99	65.957	Saimiri_boliviensis_boliviensis
ENSSDUG00000019269	r3hdm2	99	62.142	ENSSHAG00000003511	R3HDM2	99	65.673	Sarcophilus_harrisii
ENSSDUG00000019269	r3hdm2	100	77.331	ENSSFOG00015011219	r3hdm2	99	79.321	Scleropages_formosus
ENSSDUG00000019269	r3hdm2	100	94.073	ENSSMAG00000012073	r3hdm2	100	94.262	Scophthalmus_maximus
ENSSDUG00000019269	r3hdm2	100	99.715	ENSSLDG00000005252	r3hdm2	100	99.715	Seriola_lalandi_dorsalis
ENSSDUG00000019269	r3hdm2	93	62.124	ENSSARG00000003958	R3HDM2	91	58.532	Sorex_araneus
ENSSDUG00000019269	r3hdm2	100	60.926	ENSSPUG00000014132	R3HDM2	99	60.943	Sphenodon_punctatus
ENSSDUG00000019269	r3hdm2	100	97.167	ENSSPAG00000022594	r3hdm2	100	97.167	Stegastes_partitus
ENSSDUG00000019269	r3hdm2	100	67.927	ENSSSCG00000026498	R3HDM2	100	65.761	Sus_scrofa
ENSSDUG00000019269	r3hdm2	72	63.299	ENSTGUG00000015881	R3HDM2	99	61.862	Taeniopygia_guttata
ENSSDUG00000019269	r3hdm2	100	92.191	ENSTRUG00000015075	r3hdm2	98	91.974	Takifugu_rubripes
ENSSDUG00000019269	r3hdm2	91	89.944	ENSTNIG00000007057	r3hdm2	90	92.737	Tetraodon_nigroviridis
ENSSDUG00000019269	r3hdm2	80	69.395	ENSTBEG00000015967	R3HDM2	78	65.101	Tupaia_belangeri
ENSSDUG00000019269	r3hdm2	88	72.846	ENSTTRG00000013082	R3HDM2	94	63.874	Tursiops_truncatus
ENSSDUG00000019269	r3hdm2	100	65.933	ENSUAMG00000020913	R3HDM2	99	66.043	Ursus_americanus
ENSSDUG00000019269	r3hdm2	96	67.301	ENSUMAG00000019179	R3HDM2	96	65.768	Ursus_maritimus
ENSSDUG00000019269	r3hdm2	90	77.483	ENSVPAG00000008656	R3HDM2	87	83.395	Vicugna_pacos
ENSSDUG00000019269	r3hdm2	93	68.044	ENSVVUG00000018014	R3HDM2	95	65.646	Vulpes_vulpes
ENSSDUG00000019269	r3hdm2	100	61.860	ENSXETG00000017153	r3hdm2	99	60.933	Xenopus_tropicalis
ENSSDUG00000019269	r3hdm2	92	90.654	ENSXCOG00000013882	r3hdm2	100	90.070	Xiphophorus_couchianus
ENSSDUG00000019269	r3hdm2	100	91.541	ENSXMAG00000017978	r3hdm2	100	90.176	Xiphophorus_maculatus