EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000019287 (Gene tree)
Gene ID: 111223252
Gene Symbol: -
Alias: -
Full Name: RNA-binding motif%2C single-stranded-interacting protein 3
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 269669 bases
Position: chrBDQW01000110.1:10130260-10399928
Accession: 111223252
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000026683	RRM_1	PF00076.22	2.6e-31	1	2
ENSSDUP00000026683	RRM_1	PF00076.22	2.6e-31	2	2
ENSSDUP00000026610	RRM_1	PF00076.22	5e-31	1	2
ENSSDUP00000026610	RRM_1	PF00076.22	5e-31	2	2
ENSSDUP00000026644	RRM_1	PF00076.22	5e-31	1	2
ENSSDUP00000026644	RRM_1	PF00076.22	5e-31	2	2
ENSSDUP00000026583	RRM_1	PF00076.22	5.9e-31	1	2
ENSSDUP00000026583	RRM_1	PF00076.22	5.9e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000027083	-	1897	XM_022747322	ENSSDUP00000026610	523 (aa)	XP_022603043	UPI000BBE4821
ENSSDUT00000027160	-	1251	XM_022747324	ENSSDUP00000026683	416 (aa)	XP_022603045	UPI000496A0F2
ENSSDUT00000027055	-	1864	-	ENSSDUP00000026583	512 (aa)	-	-
ENSSDUT00000027121	-	1827	-	ENSSDUP00000026644	523 (aa)	-	UPI000BBE4821

Gene Model

Click here to download ENSSDUG00000019287's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000019287's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000019287	-	88	74.521	ENSSDUG00000005666	rbms2a	94	75.075
ENSSDUG00000019287	-	88	72.404	ENSSDUG00000013574	rbms2b	77	80.537
ENSSDUG00000019287	-	99	83.059	ENSSDUG00000013656	RBMS3	99	83.294
ENSSDUG00000019287	-	84	71.667	ENSSDUG00000018803	RBMS1	84	72.485
ENSSDUG00000019287	-	82	59.884	ENSSDUG00000020602	rbms1a	95	58.689

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000019287	-	99	88.333	ENSG00000144642	RBMS3	100	90.152	Homo_sapiens
ENSSDUG00000019287	-	99	74.179	ENSAPOG00000007266	rbms3	93	82.338	Acanthochromis_polyacanthus
ENSSDUG00000019287	-	100	100.000	ENSAPOG00000003432	-	100	100.000	Acanthochromis_polyacanthus
ENSSDUG00000019287	-	69	84.158	ENSAMEG00000005947	RBMS3	99	84.158	Ailuropoda_melanoleuca
ENSSDUG00000019287	-	78	97.239	ENSACIG00000006987	-	89	97.239	Amphilophus_citrinellus
ENSSDUG00000019287	-	88	74.590	ENSACIG00000021113	RBMS3	95	74.863	Amphilophus_citrinellus
ENSSDUG00000019287	-	100	95.985	ENSAOCG00000024104	-	100	95.985	Amphiprion_ocellaris
ENSSDUG00000019287	-	99	82.394	ENSAOCG00000021274	rbms3	99	82.394	Amphiprion_ocellaris
ENSSDUG00000019287	-	100	91.587	ENSAPEG00000009481	-	100	91.587	Amphiprion_percula
ENSSDUG00000019287	-	82	83.807	ENSAPEG00000016299	rbms3	87	87.048	Amphiprion_percula
ENSSDUG00000019287	-	99	83.019	ENSATEG00000024295	rbms3	99	83.255	Anabas_testudineus
ENSSDUG00000019287	-	100	99.760	ENSATEG00000008433	-	100	99.760	Anabas_testudineus
ENSSDUG00000019287	-	99	86.111	ENSAPLG00000012270	RBMS3	99	85.417	Anas_platyrhynchos
ENSSDUG00000019287	-	99	88.544	ENSACAG00000028664	RBMS3	99	88.544	Anolis_carolinensis
ENSSDUG00000019287	-	99	85.681	ENSANAG00000021899	RBMS3	99	85.681	Aotus_nancymaae
ENSSDUG00000019287	-	99	82.270	ENSACLG00000018506	rbms3	99	82.506	Astatotilapia_calliptera
ENSSDUG00000019287	-	100	93.371	ENSACLG00000008976	-	100	93.561	Astatotilapia_calliptera
ENSSDUG00000019287	-	62	87.597	ENSAMXG00000043770	-	100	87.597	Astyanax_mexicanus
ENSSDUG00000019287	-	99	90.338	ENSAMXG00000020388	rbms3	99	90.338	Astyanax_mexicanus
ENSSDUG00000019287	-	99	88.810	ENSBTAG00000044062	RBMS3	99	88.810	Bos_taurus
ENSSDUG00000019287	-	99	85.681	ENSCJAG00000004312	RBMS3	99	85.681	Callithrix_jacchus
ENSSDUG00000019287	-	99	85.092	ENSCAFG00000005464	RBMS3	99	85.092	Canis_familiaris
ENSSDUG00000019287	-	99	85.092	ENSCAFG00020024980	RBMS3	99	85.092	Canis_lupus_dingo
ENSSDUG00000019287	-	99	88.333	ENSCHIG00000009144	RBMS3	99	88.333	Capra_hircus
ENSSDUG00000019287	-	76	85.758	ENSTSYG00000002615	RBMS3	99	85.758	Carlito_syrichta
ENSSDUG00000019287	-	88	83.562	ENSCAPG00000017783	RBMS3	95	82.842	Cavia_aperea
ENSSDUG00000019287	-	99	88.675	ENSCPOG00000006457	RBMS3	99	88.675	Cavia_porcellus
ENSSDUG00000019287	-	99	85.681	ENSCCAG00000008671	RBMS3	99	85.681	Cebus_capucinus
ENSSDUG00000019287	-	100	85.321	ENSCATG00000013222	RBMS3	100	85.321	Cercocebus_atys
ENSSDUG00000019287	-	99	87.857	ENSCLAG00000005866	RBMS3	99	87.857	Chinchilla_lanigera
ENSSDUG00000019287	-	65	87.778	ENSCSAG00000009655	RBMS3	99	87.778	Chlorocebus_sabaeus
ENSSDUG00000019287	-	87	88.000	ENSCHOG00000000758	RBMS3	86	88.000	Choloepus_hoffmanni
ENSSDUG00000019287	-	99	88.783	ENSCPBG00000022678	RBMS3	99	88.783	Chrysemys_picta_bellii
ENSSDUG00000019287	-	99	85.450	ENSCANG00000032137	RBMS3	99	85.450	Colobus_angolensis_palliatus
ENSSDUG00000019287	-	99	86.506	ENSCGRG00001007243	Rbms3	99	86.506	Cricetulus_griseus_chok1gshd
ENSSDUG00000019287	-	99	86.506	ENSCGRG00000004599	Rbms3	99	86.506	Cricetulus_griseus_crigri
ENSSDUG00000019287	-	99	82.824	ENSCSEG00000010011	RBMS3	99	83.059	Cynoglossus_semilaevis
ENSSDUG00000019287	-	100	97.837	ENSCSEG00000014677	-	94	100.000	Cynoglossus_semilaevis
ENSSDUG00000019287	-	100	99.041	ENSCVAG00000022814	-	100	99.217	Cyprinodon_variegatus
ENSSDUG00000019287	-	99	83.810	ENSCVAG00000022354	rbms3	99	83.810	Cyprinodon_variegatus
ENSSDUG00000019287	-	99	89.855	ENSDARG00000044574	rbms3	95	94.891	Danio_rerio
ENSSDUG00000019287	-	99	87.857	ENSDNOG00000016645	RBMS3	96	87.857	Dasypus_novemcinctus
ENSSDUG00000019287	-	99	87.619	ENSDORG00000007220	Rbms3	99	87.619	Dipodomys_ordii
ENSSDUG00000019287	-	87	83.333	ENSETEG00000009485	-	80	70.286	Echinops_telfairi
ENSSDUG00000019287	-	67	54.122	ENSEBUG00000005830	rbms3	86	55.263	Eptatretus_burgeri
ENSSDUG00000019287	-	99	88.095	ENSEASG00005006152	RBMS3	99	88.095	Equus_asinus_asinus
ENSSDUG00000019287	-	99	88.095	ENSECAG00000017871	RBMS3	99	88.095	Equus_caballus
ENSSDUG00000019287	-	90	79.545	ENSEEUG00000014337	RBMS3	100	79.545	Erinaceus_europaeus
ENSSDUG00000019287	-	99	80.378	ENSELUG00000002862	rbms3	99	80.378	Esox_lucius
ENSSDUG00000019287	-	92	96.335	ENSELUG00000006905	-	100	96.335	Esox_lucius
ENSSDUG00000019287	-	99	87.857	ENSFCAG00000002130	RBMS3	99	87.857	Felis_catus
ENSSDUG00000019287	-	99	89.021	ENSFALG00000009165	RBMS3	99	89.021	Ficedula_albicollis
ENSSDUG00000019287	-	99	87.381	ENSFDAG00000008278	RBMS3	99	87.381	Fukomys_damarensis
ENSSDUG00000019287	-	95	69.877	ENSFHEG00000004787	RBMS3	94	76.294	Fundulus_heteroclitus
ENSSDUG00000019287	-	90	89.421	ENSGMOG00000002600	-	96	89.421	Gadus_morhua
ENSSDUG00000019287	-	99	89.021	ENSGALG00000011439	RBMS3	99	89.021	Gallus_gallus
ENSSDUG00000019287	-	99	83.373	ENSGAFG00000000168	rbms3	99	83.373	Gambusia_affinis
ENSSDUG00000019287	-	100	99.281	ENSGAFG00000003329	-	100	99.281	Gambusia_affinis
ENSSDUG00000019287	-	65	88.192	ENSGAGG00000004039	RBMS3	99	88.192	Gopherus_agassizii
ENSSDUG00000019287	-	99	85.681	ENSGGOG00000007228	RBMS3	99	85.681	Gorilla_gorilla
ENSSDUG00000019287	-	100	94.688	ENSHBUG00000019785	-	95	98.977	Haplochromis_burtoni
ENSSDUG00000019287	-	63	85.874	ENSHBUG00000021196	rbms3	94	85.874	Haplochromis_burtoni
ENSSDUG00000019287	-	99	87.857	ENSHGLG00000002170	RBMS3	99	87.857	Heterocephalus_glaber_female
ENSSDUG00000019287	-	99	87.857	ENSHGLG00100014278	RBMS3	99	87.857	Heterocephalus_glaber_male
ENSSDUG00000019287	-	100	97.362	ENSHCOG00000007894	-	100	97.362	Hippocampus_comes
ENSSDUG00000019287	-	99	90.580	ENSIPUG00000017680	rbms3	99	90.580	Ictalurus_punctatus
ENSSDUG00000019287	-	99	88.333	ENSSTOG00000006324	RBMS3	99	88.333	Ictidomys_tridecemlineatus
ENSSDUG00000019287	-	99	84.286	ENSJJAG00000014708	Rbms3	99	84.524	Jaculus_jaculus
ENSSDUG00000019287	-	100	99.279	ENSKMAG00000012586	-	100	99.279	Kryptolebias_marmoratus
ENSSDUG00000019287	-	99	81.499	ENSKMAG00000020500	rbms3	99	81.499	Kryptolebias_marmoratus
ENSSDUG00000019287	-	100	98.317	ENSLBEG00000027388	-	100	98.317	Labrus_bergylta
ENSSDUG00000019287	-	60	75.379	ENSLBEG00000006677	rbms3	97	75.379	Labrus_bergylta
ENSSDUG00000019287	-	99	90.909	ENSLACG00000010581	RBMS3	99	90.909	Latimeria_chalumnae
ENSSDUG00000019287	-	69	92.042	ENSLOCG00000002328	rbms3	99	92.042	Lepisosteus_oculatus
ENSSDUG00000019287	-	99	84.862	ENSLAFG00000000354	RBMS3	99	84.862	Loxodonta_africana
ENSSDUG00000019287	-	99	88.095	ENSMFAG00000033300	RBMS3	99	88.095	Macaca_fascicularis
ENSSDUG00000019287	-	99	88.095	ENSMMUG00000004404	RBMS3	99	88.095	Macaca_mulatta
ENSSDUG00000019287	-	99	85.450	ENSMNEG00000035839	RBMS3	99	85.450	Macaca_nemestrina
ENSSDUG00000019287	-	100	85.321	ENSMLEG00000029464	RBMS3	100	85.321	Mandrillus_leucophaeus
ENSSDUG00000019287	-	100	93.690	ENSMAMG00000002176	-	100	99.233	Mastacembelus_armatus
ENSSDUG00000019287	-	99	83.294	ENSMAMG00000024043	rbms3	99	84.235	Mastacembelus_armatus
ENSSDUG00000019287	-	100	96.253	ENSMZEG00005026469	-	100	93.561	Maylandia_zebra
ENSSDUG00000019287	-	99	82.270	ENSMZEG00005006308	rbms3	99	82.506	Maylandia_zebra
ENSSDUG00000019287	-	99	86.506	ENSMAUG00000016436	Rbms3	99	86.506	Mesocricetus_auratus
ENSSDUG00000019287	-	99	85.681	ENSMICG00000049249	RBMS3	99	85.681	Microcebus_murinus
ENSSDUG00000019287	-	99	86.265	ENSMOCG00000006997	Rbms3	99	86.265	Microtus_ochrogaster
ENSSDUG00000019287	-	82	84.571	ENSMMOG00000008471	RBMS3	89	87.842	Mola_mola
ENSSDUG00000019287	-	100	97.837	ENSMMOG00000015071	-	100	97.837	Mola_mola
ENSSDUG00000019287	-	99	80.804	ENSMODG00000015125	RBMS3	99	80.134	Monodelphis_domestica
ENSSDUG00000019287	-	99	82.824	ENSMALG00000019536	RBMS3	99	80.896	Monopterus_albus
ENSSDUG00000019287	-	100	99.038	ENSMALG00000009155	-	100	99.038	Monopterus_albus
ENSSDUG00000019287	-	99	85.542	MGP_CAROLIEiJ_G0032783	Rbms3	100	90.338	Mus_caroli
ENSSDUG00000019287	-	99	86.265	ENSMUSG00000039607	Rbms3	100	91.787	Mus_musculus
ENSSDUG00000019287	-	99	86.058	MGP_PahariEiJ_G0015650	Rbms3	100	91.787	Mus_pahari
ENSSDUG00000019287	-	99	86.265	MGP_SPRETEiJ_G0033930	Rbms3	100	91.787	Mus_spretus
ENSSDUG00000019287	-	99	85.092	ENSMPUG00000011956	RBMS3	99	85.092	Mustela_putorius_furo
ENSSDUG00000019287	-	99	88.095	ENSMLUG00000000659	RBMS3	99	88.095	Myotis_lucifugus
ENSSDUG00000019287	-	99	88.193	ENSNGAG00000014039	Rbms3	99	88.193	Nannospalax_galili
ENSSDUG00000019287	-	100	98.798	ENSNBRG00000018065	-	100	98.798	Neolamprologus_brichardi
ENSSDUG00000019287	-	99	85.681	ENSNLEG00000004129	RBMS3	99	85.681	Nomascus_leucogenys
ENSSDUG00000019287	-	99	78.719	ENSMEUG00000004772	RBMS3	99	78.719	Notamacropus_eugenii
ENSSDUG00000019287	-	99	84.988	ENSOPRG00000006808	RBMS3	85	84.988	Ochotona_princeps
ENSSDUG00000019287	-	99	88.333	ENSODEG00000003651	RBMS3	99	88.333	Octodon_degus
ENSSDUG00000019287	-	99	76.960	ENSONIG00000007172	rbms3	99	77.197	Oreochromis_niloticus
ENSSDUG00000019287	-	99	86.009	ENSOANG00000010529	RBMS3	99	86.009	Ornithorhynchus_anatinus
ENSSDUG00000019287	-	99	84.404	ENSOCUG00000004840	RBMS3	99	84.404	Oryctolagus_cuniculus
ENSSDUG00000019287	-	99	81.473	ENSORLG00000005370	RBMS3	99	81.473	Oryzias_latipes
ENSSDUG00000019287	-	100	98.317	ENSORLG00000002306	-	100	98.317	Oryzias_latipes
ENSSDUG00000019287	-	100	98.558	ENSORLG00020008496	-	100	98.558	Oryzias_latipes_hni
ENSSDUG00000019287	-	99	81.235	ENSORLG00020022674	RBMS3	99	81.235	Oryzias_latipes_hni
ENSSDUG00000019287	-	99	81.710	ENSORLG00015005509	rbms3	99	81.710	Oryzias_latipes_hsok
ENSSDUG00000019287	-	100	98.558	ENSORLG00015015719	-	100	98.558	Oryzias_latipes_hsok
ENSSDUG00000019287	-	92	98.168	ENSOMEG00000007677	-	100	98.168	Oryzias_melastigma
ENSSDUG00000019287	-	99	82.185	ENSOMEG00000014805	RBMS3	99	82.185	Oryzias_melastigma
ENSSDUG00000019287	-	99	84.633	ENSOARG00000014684	RBMS3	99	84.633	Ovis_aries
ENSSDUG00000019287	-	99	85.681	ENSPPAG00000036519	RBMS3	99	85.681	Pan_paniscus
ENSSDUG00000019287	-	99	84.988	ENSPPRG00000002761	RBMS3	99	84.988	Panthera_pardus
ENSSDUG00000019287	-	99	87.619	ENSPTIG00000011568	RBMS3	99	87.619	Panthera_tigris_altaica
ENSSDUG00000019287	-	99	88.333	ENSPTRG00000014709	RBMS3	99	88.333	Pan_troglodytes
ENSSDUG00000019287	-	100	85.321	ENSPANG00000010234	RBMS3	100	85.321	Papio_anubis
ENSSDUG00000019287	-	62	92.636	ENSPKIG00000007989	-	100	92.636	Paramormyrops_kingsleyae
ENSSDUG00000019287	-	50	93.269	ENSPKIG00000016025	-	86	80.632	Paramormyrops_kingsleyae
ENSSDUG00000019287	-	99	88.305	ENSPSIG00000005269	RBMS3	99	88.305	Pelodiscus_sinensis
ENSSDUG00000019287	-	82	83.908	ENSPMGG00000021544	rbms3	86	86.145	Periophthalmus_magnuspinnatus
ENSSDUG00000019287	-	92	98.691	ENSPMGG00000021683	-	100	98.691	Periophthalmus_magnuspinnatus
ENSSDUG00000019287	-	99	83.575	ENSPEMG00000001117	Rbms3	99	83.575	Peromyscus_maniculatus_bairdii
ENSSDUG00000019287	-	83	90.028	ENSPCIG00000006106	RBMS3	89	89.720	Phascolarctos_cinereus
ENSSDUG00000019287	-	99	83.848	ENSPFOG00000017887	rbms3	99	83.848	Poecilia_formosa
ENSSDUG00000019287	-	77	81.931	ENSPLAG00000016866	-	82	81.931	Poecilia_latipinna
ENSSDUG00000019287	-	100	99.281	ENSPMEG00000002993	-	100	99.281	Poecilia_mexicana
ENSSDUG00000019287	-	100	81.991	ENSPREG00000011880	rbms3	100	81.991	Poecilia_reticulata
ENSSDUG00000019287	-	97	97.277	ENSPREG00000018221	-	97	97.222	Poecilia_reticulata
ENSSDUG00000019287	-	99	72.018	ENSPPYG00000014050	RBMS3	82	72.018	Pongo_abelii
ENSSDUG00000019287	-	99	65.596	ENSPCAG00000006307	RBMS3	99	65.596	Procavia_capensis
ENSSDUG00000019287	-	99	85.912	ENSPCOG00000017136	RBMS3	99	85.912	Propithecus_coquereli
ENSSDUG00000019287	-	89	88.000	ENSPVAG00000014037	RBMS3	99	75.917	Pteropus_vampyrus
ENSSDUG00000019287	-	99	82.033	ENSPNYG00000010546	rbms3	99	82.270	Pundamilia_nyererei
ENSSDUG00000019287	-	100	99.038	ENSPNYG00000012624	-	100	99.038	Pundamilia_nyererei
ENSSDUG00000019287	-	99	90.338	ENSPNAG00000001800	rbms3	99	90.338	Pygocentrus_nattereri
ENSSDUG00000019287	-	99	86.506	ENSRNOG00000025881	Rbms3	99	86.506	Rattus_norvegicus
ENSSDUG00000019287	-	99	85.219	ENSRBIG00000035863	RBMS3	99	85.219	Rhinopithecus_bieti
ENSSDUG00000019287	-	88	86.807	ENSRROG00000027512	RBMS3	94	85.751	Rhinopithecus_roxellana
ENSSDUG00000019287	-	99	85.681	ENSSBOG00000020232	RBMS3	99	85.681	Saimiri_boliviensis_boliviensis
ENSSDUG00000019287	-	88	83.607	ENSSHAG00000002411	RBMS3	95	82.527	Sarcophilus_harrisii
ENSSDUG00000019287	-	100	95.192	ENSSFOG00015008578	rbms3	100	95.192	Scleropages_formosus
ENSSDUG00000019287	-	99	79.577	ENSSMAG00000004997	rbms3	99	83.607	Scophthalmus_maximus
ENSSDUG00000019287	-	98	92.857	ENSSMAG00000020065	-	97	93.781	Scophthalmus_maximus
ENSSDUG00000019287	-	99	82.710	ENSSLDG00000020276	RBMS3	99	82.944	Seriola_lalandi_dorsalis
ENSSDUG00000019287	-	100	100.000	ENSSLDG00000013224	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000019287	-	78	74.854	ENSSARG00000000695	RBMS3	94	73.926	Sorex_araneus
ENSSDUG00000019287	-	69	87.329	ENSSPUG00000017197	RBMS3	97	86.195	Sphenodon_punctatus
ENSSDUG00000019287	-	98	96.822	ENSSPAG00000003983	-	100	94.677	Stegastes_partitus
ENSSDUG00000019287	-	99	82.394	ENSSPAG00000020693	rbms3	99	82.629	Stegastes_partitus
ENSSDUG00000019287	-	99	87.857	ENSSSCG00000036381	RBMS3	99	87.857	Sus_scrofa
ENSSDUG00000019287	-	76	85.586	ENSTGUG00000003572	RBMS3	99	85.586	Taeniopygia_guttata
ENSSDUG00000019287	-	99	80.706	ENSTRUG00000021719	RBMS3	99	80.706	Takifugu_rubripes
ENSSDUG00000019287	-	100	86.698	ENSTRUG00000007482	-	100	86.874	Takifugu_rubripes
ENSSDUG00000019287	-	78	88.304	ENSTBEG00000005362	RBMS3	94	87.106	Tupaia_belangeri
ENSSDUG00000019287	-	99	84.404	ENSTTRG00000006202	RBMS3	99	84.404	Tursiops_truncatus
ENSSDUG00000019287	-	99	85.092	ENSUMAG00000000263	RBMS3	99	85.092	Ursus_maritimus
ENSSDUG00000019287	-	88	76.178	ENSVPAG00000003842	RBMS3	94	75.321	Vicugna_pacos
ENSSDUG00000019287	-	88	86.649	ENSVVUG00000004660	RBMS3	94	92.202	Vulpes_vulpes
ENSSDUG00000019287	-	70	82.085	ENSXETG00000032055	RBMS3	98	82.085	Xenopus_tropicalis
ENSSDUG00000019287	-	92	83.548	ENSXCOG00000019600	-	100	83.548	Xiphophorus_couchianus
ENSSDUG00000019287	-	100	99.520	ENSXMAG00000014382	-	100	99.520	Xiphophorus_maculatus
ENSSDUG00000019287	-	99	81.517	ENSXMAG00000021783	rbms3	99	81.517	Xiphophorus_maculatus