EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000019629 (Gene tree)
Gene ID: 111219959
Gene Symbol: -
Alias: -
Full Name: GTP-binding protein SAR1b-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 7325 bases
Position: chrBDQW01000068.1:7763508-7770832
Accession: 111219959
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000027096	MMR_HSR1	PF01926.23	8.8e-06	1	1
ENSSDUP00000027108	MMR_HSR1	PF01926.23	9.5e-06	1	1
ENSSDUP00000027089	MMR_HSR1	PF01926.23	1.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000027568	-	393	-	ENSSDUP00000027089	130 (aa)	-	-
ENSSDUT00000027576	-	2952	XM_022742838	ENSSDUP00000027096	198 (aa)	XP_022598559	UPI000BBF278F
ENSSDUT00000027589	-	3215	-	ENSSDUP00000027108	204 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000019629's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000019629's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000019629	-	89	32.222	ENSSDUG00000013427	-	92	32.778
ENSSDUG00000019629	-	95	30.928	ENSSDUG00000003943	arl3l2	95	30.928
ENSSDUG00000019629	-	88	30.682	ENSSDUG00000013898	arl1	93	30.682
ENSSDUG00000019629	-	68	39.362	ENSSDUG00000011151	-	66	36.364
ENSSDUG00000019629	-	87	31.429	ENSSDUG00000014675	-	89	31.429
ENSSDUG00000019629	-	100	83.838	ENSSDUG00000010773	sar1ab	100	83.838
ENSSDUG00000019629	-	88	30.435	ENSSDUG00000012261	arl5a	59	30.435
ENSSDUG00000019629	-	91	32.609	ENSSDUG00000017254	-	96	32.609
ENSSDUG00000019629	-	72	36.842	ENSSDUG00000023723	-	93	34.615
ENSSDUG00000019629	-	91	32.044	ENSSDUG00000017356	-	94	32.044
ENSSDUG00000019629	-	81	31.624	ENSSDUG00000006652	ARL6	84	30.380
ENSSDUG00000019629	-	75	30.612	ENSSDUG00000004762	-	66	30.000
ENSSDUG00000019629	-	76	36.364	ENSSDUG00000005105	arf5	54	36.364
ENSSDUG00000019629	-	91	31.492	ENSSDUG00000007780	arf2b	94	31.492
ENSSDUG00000019629	-	80	38.532	ENSSDUG00000012868	arl4cb	74	34.459
ENSSDUG00000019629	-	77	38.318	ENSSDUG00000000586	arl4aa	58	38.261
ENSSDUG00000019629	-	100	84.848	ENSSDUG00000020926	sar1b	98	87.705
ENSSDUG00000019629	-	86	30.682	ENSSDUG00000010935	arl4d	82	30.682
ENSSDUG00000019629	-	73	33.103	ENSSDUG00000000578	arl8a	73	33.103
ENSSDUG00000019629	-	71	36.957	ENSSDUG00000022640	arl5c	51	38.202
ENSSDUG00000019629	-	68	34.831	ENSSDUG00000007515	ARL5B	50	34.831
ENSSDUG00000019629	-	94	30.108	ENSSDUG00000013041	-	96	30.108
ENSSDUG00000019629	-	92	32.240	ENSSDUG00000021397	arl2	93	32.240
ENSSDUG00000019629	-	86	30.814	ENSSDUG00000004422	arl11	94	30.814
ENSSDUG00000019629	-	68	35.955	ENSSDUG00000020599	-	50	35.955
ENSSDUG00000019629	-	86	32.584	ENSSDUG00000017586	-	82	32.584
ENSSDUG00000019629	-	94	30.108	ENSSDUG00000007524	arf3b	94	30.108
ENSSDUG00000019629	-	72	31.373	ENSSDUG00000007121	arfrp1	51	31.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000019629	-	100	84.343	ENSAPOG00000007186	sar1b	100	84.343	Acanthochromis_polyacanthus
ENSSDUG00000019629	-	100	98.485	ENSAPOG00000017891	-	100	98.485	Acanthochromis_polyacanthus
ENSSDUG00000019629	-	100	85.354	ENSACIG00000013634	sar1b	100	85.354	Amphilophus_citrinellus
ENSSDUG00000019629	-	100	97.475	ENSACIG00000024513	-	100	97.475	Amphilophus_citrinellus
ENSSDUG00000019629	-	100	98.485	ENSAOCG00000002627	-	100	98.485	Amphiprion_ocellaris
ENSSDUG00000019629	-	100	83.838	ENSAOCG00000005888	sar1b	100	83.838	Amphiprion_ocellaris
ENSSDUG00000019629	-	100	98.485	ENSAPEG00000019680	-	100	98.485	Amphiprion_percula
ENSSDUG00000019629	-	100	83.838	ENSAPEG00000022771	sar1b	100	83.838	Amphiprion_percula
ENSSDUG00000019629	-	100	96.465	ENSATEG00000023368	-	100	96.465	Anabas_testudineus
ENSSDUG00000019629	-	100	82.828	ENSATEG00000012904	sar1b	100	82.828	Anabas_testudineus
ENSSDUG00000019629	-	100	83.838	ENSACAG00000001470	-	100	83.838	Anolis_carolinensis
ENSSDUG00000019629	-	100	84.848	ENSACLG00000014649	sar1b	100	84.848	Astatotilapia_calliptera
ENSSDUG00000019629	-	100	97.980	ENSACLG00000005011	-	100	97.980	Astatotilapia_calliptera
ENSSDUG00000019629	-	100	90.404	ENSAMXG00000034192	-	91	90.404	Astyanax_mexicanus
ENSSDUG00000019629	-	91	89.831	ENSAMXG00000018108	sar1b	85	89.831	Astyanax_mexicanus
ENSSDUG00000019629	-	100	92.929	ENSCSEG00000016976	-	100	92.929	Cynoglossus_semilaevis
ENSSDUG00000019629	-	100	79.293	ENSCSEG00000015238	sar1b	97	79.293	Cynoglossus_semilaevis
ENSSDUG00000019629	-	100	86.364	ENSCVAG00000022959	sar1b	100	86.364	Cyprinodon_variegatus
ENSSDUG00000019629	-	100	85.859	ENSDARG00000103403	sar1b	100	85.859	Danio_rerio
ENSSDUG00000019629	-	99	68.878	FBgn0038947	Sar1	99	68.878	Drosophila_melanogaster
ENSSDUG00000019629	-	97	80.208	ENSEBUG00000011723	sar1b	97	80.208	Eptatretus_burgeri
ENSSDUG00000019629	-	100	86.869	ENSELUG00000020912	sar1b	100	86.869	Esox_lucius
ENSSDUG00000019629	-	100	85.354	ENSFHEG00000019865	sar1b	100	85.354	Fundulus_heteroclitus
ENSSDUG00000019629	-	100	85.354	ENSGMOG00000008023	sar1b	100	85.354	Gadus_morhua
ENSSDUG00000019629	-	100	83.838	ENSGAFG00000007081	sar1b	100	83.838	Gambusia_affinis
ENSSDUG00000019629	-	100	82.323	ENSGACG00000001474	sar1b	100	82.323	Gasterosteus_aculeatus
ENSSDUG00000019629	-	100	84.848	ENSHBUG00000000915	sar1b	100	84.848	Haplochromis_burtoni
ENSSDUG00000019629	-	100	97.980	ENSHBUG00000018397	-	100	97.980	Haplochromis_burtoni
ENSSDUG00000019629	-	100	83.838	ENSHCOG00000010953	sar1b	100	83.838	Hippocampus_comes
ENSSDUG00000019629	-	100	84.343	ENSIPUG00000020925	sar1b	100	84.343	Ictalurus_punctatus
ENSSDUG00000019629	-	100	88.384	ENSIPUG00000010046	sar1b	100	88.384	Ictalurus_punctatus
ENSSDUG00000019629	-	100	84.343	ENSKMAG00000019693	sar1b	100	84.343	Kryptolebias_marmoratus
ENSSDUG00000019629	-	100	91.414	ENSKMAG00000014875	-	100	91.414	Kryptolebias_marmoratus
ENSSDUG00000019629	-	100	81.818	ENSLBEG00000027550	sar1b	100	81.818	Labrus_bergylta
ENSSDUG00000019629	-	100	97.475	ENSLBEG00000016945	-	100	97.475	Labrus_bergylta
ENSSDUG00000019629	-	100	66.834	ENSLACG00000017029	-	100	66.834	Latimeria_chalumnae
ENSSDUG00000019629	-	100	80.808	ENSLACG00000010795	sar1b	100	80.808	Latimeria_chalumnae
ENSSDUG00000019629	-	100	87.374	ENSLOCG00000005214	-	100	87.374	Lepisosteus_oculatus
ENSSDUG00000019629	-	100	85.859	ENSLOCG00000010197	sar1b	100	85.859	Lepisosteus_oculatus
ENSSDUG00000019629	-	100	82.828	ENSMAMG00000021732	sar1b	100	82.828	Mastacembelus_armatus
ENSSDUG00000019629	-	100	97.980	ENSMZEG00005001012	-	100	97.980	Maylandia_zebra
ENSSDUG00000019629	-	100	84.848	ENSMZEG00005008942	sar1b	100	84.848	Maylandia_zebra
ENSSDUG00000019629	-	90	84.916	ENSMGAG00000005387	-	91	84.916	Meleagris_gallopavo
ENSSDUG00000019629	-	100	96.465	ENSMMOG00000013803	-	100	96.465	Mola_mola
ENSSDUG00000019629	-	100	83.333	ENSMALG00000016635	sar1b	97	81.868	Monopterus_albus
ENSSDUG00000019629	-	100	98.485	ENSNBRG00000014004	-	100	98.485	Neolamprologus_brichardi
ENSSDUG00000019629	-	100	84.848	ENSNBRG00000008013	sar1b	100	84.848	Neolamprologus_brichardi
ENSSDUG00000019629	-	100	84.848	ENSONIG00000017278	sar1b	100	84.848	Oreochromis_niloticus
ENSSDUG00000019629	-	100	85.354	ENSORLG00000000932	sar1b	100	85.354	Oryzias_latipes
ENSSDUG00000019629	-	100	85.354	ENSORLG00020021985	sar1b	100	85.354	Oryzias_latipes_hni
ENSSDUG00000019629	-	100	85.354	ENSORLG00015007044	sar1b	100	85.354	Oryzias_latipes_hsok
ENSSDUG00000019629	-	100	83.838	ENSOMEG00000001052	sar1b	100	83.838	Oryzias_melastigma
ENSSDUG00000019629	-	100	83.838	ENSPKIG00000010688	sar1b	100	83.838	Paramormyrops_kingsleyae
ENSSDUG00000019629	-	100	86.364	ENSPKIG00000017353	-	100	86.364	Paramormyrops_kingsleyae
ENSSDUG00000019629	-	95	83.871	ENSPMGG00000001234	sar1b	97	83.871	Periophthalmus_magnuspinnatus
ENSSDUG00000019629	-	100	80.100	ENSPMAG00000003593	sar1b	100	80.100	Petromyzon_marinus
ENSSDUG00000019629	-	100	83.838	ENSPFOG00000005666	sar1b	100	83.838	Poecilia_formosa
ENSSDUG00000019629	-	100	84.343	ENSPLAG00000012223	sar1b	100	84.343	Poecilia_latipinna
ENSSDUG00000019629	-	92	91.667	ENSPLAG00000001016	-	77	91.667	Poecilia_latipinna
ENSSDUG00000019629	-	100	83.838	ENSPMEG00000016831	sar1b	100	83.838	Poecilia_mexicana
ENSSDUG00000019629	-	100	83.838	ENSPREG00000005312	sar1b	91	83.417	Poecilia_reticulata
ENSSDUG00000019629	-	96	88.189	ENSPREG00000002020	-	94	88.189	Poecilia_reticulata
ENSSDUG00000019629	-	100	84.848	ENSPNYG00000012440	sar1b	100	84.848	Pundamilia_nyererei
ENSSDUG00000019629	-	100	97.475	ENSPNYG00000021357	-	100	97.475	Pundamilia_nyererei
ENSSDUG00000019629	-	100	86.364	ENSPNAG00000014683	sar1b	100	86.364	Pygocentrus_nattereri
ENSSDUG00000019629	-	100	90.909	ENSPNAG00000001123	-	100	90.909	Pygocentrus_nattereri
ENSSDUG00000019629	-	100	86.869	ENSSFOG00015020051	sar1b	100	86.869	Scleropages_formosus
ENSSDUG00000019629	-	100	85.859	ENSSFOG00015018128	-	100	85.859	Scleropages_formosus
ENSSDUG00000019629	-	100	81.313	ENSSMAG00000007106	sar1b	80	81.313	Scophthalmus_maximus
ENSSDUG00000019629	-	100	96.465	ENSSMAG00000002165	-	100	96.465	Scophthalmus_maximus
ENSSDUG00000019629	-	100	100.000	ENSSLDG00000024197	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000019629	-	100	84.848	ENSSLDG00000017052	sar1b	94	91.667	Seriola_lalandi_dorsalis
ENSSDUG00000019629	-	100	83.838	ENSSPUG00000010247	-	100	83.838	Sphenodon_punctatus
ENSSDUG00000019629	-	100	98.485	ENSSPAG00000015626	-	100	98.485	Stegastes_partitus
ENSSDUG00000019629	-	100	84.848	ENSSPAG00000017634	sar1b	100	84.848	Stegastes_partitus
ENSSDUG00000019629	-	100	80.808	ENSTRUG00000023908	sar1b	100	80.808	Takifugu_rubripes
ENSSDUG00000019629	-	100	82.323	ENSTNIG00000016097	sar1b	100	82.323	Tetraodon_nigroviridis
ENSSDUG00000019629	-	96	81.752	ENSXCOG00000006154	-	92	81.752	Xiphophorus_couchianus
ENSSDUG00000019629	-	90	83.146	ENSXCOG00000004160	sar1b	87	83.146	Xiphophorus_couchianus
ENSSDUG00000019629	-	100	83.838	ENSXMAG00000008294	sar1b	100	83.838	Xiphophorus_maculatus