EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000019712 (Gene tree)
Gene ID: 111231866
Gene Symbol: cherp
Alias: fc83d01|ik:tdsubc_2h12|tdsubc_2h12|wu:fc83d01|xx:tdsubc_2h12|zgc:55518
Full Name: calcium homeostasis endoplasmic reticulum protein
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 19560 bases
Position: chrBDQW01000319.1:2004614-2024173
Accession: 111231866
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000027371	Surp	PF01805.20	4.1e-17	1	1
ENSSDUP00000027320	Surp	PF01805.20	1.3e-16	1	1
ENSSDUP00000027281	Surp	PF01805.20	1.3e-16	1	1
ENSSDUP00000027371	G-patch	PF01585.23	1.5e-10	1	1
ENSSDUP00000027320	G-patch	PF01585.23	1.6e-10	1	1
ENSSDUP00000027281	G-patch	PF01585.23	1.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000027765	-	4300	XM_022759125	ENSSDUP00000027281	941 (aa)	XP_022614846	UPI000BBE7BA6
ENSSDUT00000027855	-	2673	-	ENSSDUP00000027371	890 (aa)	-	-
ENSSDUT00000027804	-	4261	XM_022759126	ENSSDUP00000027320	928 (aa)	XP_022614847	UPI000BBEBBCB

Gene Model

Click here to download ENSSDUG00000019712's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000019712's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000019712	cherp	79	68.414	ENSG00000085872	CHERP	99	67.591	Homo_sapiens
ENSSDUG00000019712	cherp	60	90.877	ENSAPOG00000009646	cherp	99	90.519	Acanthochromis_polyacanthus
ENSSDUG00000019712	cherp	78	69.231	ENSAMEG00000010048	CHERP	99	66.703	Ailuropoda_melanoleuca
ENSSDUG00000019712	cherp	98	84.312	ENSACIG00000019242	cherp	98	84.537	Amphilophus_citrinellus
ENSSDUG00000019712	cherp	100	91.083	ENSAOCG00000017846	cherp	100	91.083	Amphiprion_ocellaris
ENSSDUG00000019712	cherp	100	91.180	ENSAPEG00000021128	cherp	100	91.286	Amphiprion_percula
ENSSDUG00000019712	cherp	100	90.254	ENSATEG00000006341	cherp	99	90.042	Anabas_testudineus
ENSSDUG00000019712	cherp	77	66.992	ENSAPLG00000010773	CHERP	99	64.403	Anas_platyrhynchos
ENSSDUG00000019712	cherp	50	69.043	ENSACAG00000011583	CHERP	99	68.050	Anolis_carolinensis
ENSSDUG00000019712	cherp	79	67.655	ENSANAG00000024284	CHERP	99	67.018	Aotus_nancymaae
ENSSDUG00000019712	cherp	100	91.711	ENSACLG00000020053	cherp	100	91.605	Astatotilapia_calliptera
ENSSDUG00000019712	cherp	100	71.608	ENSAMXG00000021637	cherp	94	71.653	Astyanax_mexicanus
ENSSDUG00000019712	cherp	98	68.022	ENSBTAG00000005289	CHERP	99	66.997	Bos_taurus
ENSSDUG00000019712	cherp	79	67.655	ENSCJAG00000040462	CHERP	99	67.018	Callithrix_jacchus
ENSSDUG00000019712	cherp	79	69.514	ENSCAFG00000015671	CHERP	99	68.128	Canis_familiaris
ENSSDUG00000019712	cherp	85	87.500	ENSCAFG00020009941	CHERP	91	75.701	Canis_lupus_dingo
ENSSDUG00000019712	cherp	86	88.750	ENSCHIG00000013765	CHERP	94	88.750	Capra_hircus
ENSSDUG00000019712	cherp	89	62.850	ENSCAPG00000000910	CHERP	68	70.534	Cavia_aperea
ENSSDUG00000019712	cherp	79	70.066	ENSCPOG00000019949	CHERP	99	68.644	Cavia_porcellus
ENSSDUG00000019712	cherp	79	67.784	ENSCCAG00000031534	CHERP	99	67.123	Cebus_capucinus
ENSSDUG00000019712	cherp	79	67.829	ENSCATG00000031409	CHERP	99	66.878	Cercocebus_atys
ENSSDUG00000019712	cherp	68	68.445	ENSCLAG00000005484	CHERP	73	66.968	Chinchilla_lanigera
ENSSDUG00000019712	cherp	79	68.676	ENSCSAG00000005740	CHERP	99	67.804	Chlorocebus_sabaeus
ENSSDUG00000019712	cherp	99	65.536	ENSCPBG00000014970	CHERP	100	65.451	Chrysemys_picta_bellii
ENSSDUG00000019712	cherp	84	48.727	ENSCING00000004814	-	53	76.923	Ciona_intestinalis
ENSSDUG00000019712	cherp	78	33.471	ENSCSAVG00000002455	-	50	77.778	Ciona_savignyi
ENSSDUG00000019712	cherp	79	68.938	ENSCANG00000032053	CHERP	99	67.697	Colobus_angolensis_palliatus
ENSSDUG00000019712	cherp	79	68.212	ENSCGRG00001023316	Cherp	99	67.542	Cricetulus_griseus_chok1gshd
ENSSDUG00000019712	cherp	79	70.533	ENSCGRG00000015901	Cherp	99	68.415	Cricetulus_griseus_crigri
ENSSDUG00000019712	cherp	80	84.853	ENSCSEG00000019700	cherp	100	84.454	Cynoglossus_semilaevis
ENSSDUG00000019712	cherp	76	83.676	ENSCVAG00000003622	cherp	93	83.531	Cyprinodon_variegatus
ENSSDUG00000019712	cherp	100	71.627	ENSDARG00000021812	cherp	100	78.599	Danio_rerio
ENSSDUG00000019712	cherp	98	64.270	ENSDORG00000027623	Cherp	100	64.465	Dipodomys_ordii
ENSSDUG00000019712	cherp	63	64.815	FBgn0261872	scaf6	54	62.500	Drosophila_melanogaster
ENSSDUG00000019712	cherp	82	76.786	ENSETEG00000019543	CHERP	83	75.893	Echinops_telfairi
ENSSDUG00000019712	cherp	79	70.573	ENSEASG00005000428	CHERP	92	68.021	Equus_asinus_asinus
ENSSDUG00000019712	cherp	79	69.908	ENSECAG00000012713	CHERP	99	67.914	Equus_caballus
ENSSDUG00000019712	cherp	99	75.539	ENSELUG00000023026	cherp	99	74.610	Esox_lucius
ENSSDUG00000019712	cherp	79	68.653	ENSFCAG00000013172	CHERP	99	67.548	Felis_catus
ENSSDUG00000019712	cherp	79	69.108	ENSFALG00000013410	CHERP	86	65.880	Ficedula_albicollis
ENSSDUG00000019712	cherp	93	91.045	ENSFHEG00000009720	cherp	77	100.000	Fundulus_heteroclitus
ENSSDUG00000019712	cherp	98	80.280	ENSGMOG00000008654	cherp	99	80.496	Gadus_morhua
ENSSDUG00000019712	cherp	79	68.449	ENSGALG00000003824	CHERP	88	65.665	Gallus_gallus
ENSSDUG00000019712	cherp	99	84.868	ENSGACG00000002053	cherp	99	84.127	Gasterosteus_aculeatus
ENSSDUG00000019712	cherp	99	65.429	ENSGAGG00000014208	CHERP	100	65.343	Gopherus_agassizii
ENSSDUG00000019712	cherp	100	91.498	ENSHBUG00000007405	cherp	100	91.392	Haplochromis_burtoni
ENSSDUG00000019712	cherp	79	69.404	ENSHGLG00000002993	CHERP	99	67.591	Heterocephalus_glaber_female
ENSSDUG00000019712	cherp	79	81.145	ENSHCOG00000007691	cherp	100	78.220	Hippocampus_comes
ENSSDUG00000019712	cherp	100	72.051	ENSIPUG00000025008	cherp	100	71.702	Ictalurus_punctatus
ENSSDUG00000019712	cherp	78	69.701	ENSSTOG00000012089	CHERP	99	67.565	Ictidomys_tridecemlineatus
ENSSDUG00000019712	cherp	99	64.557	ENSJJAG00000017982	Cherp	81	68.421	Jaculus_jaculus
ENSSDUG00000019712	cherp	100	86.588	ENSKMAG00000009101	cherp	100	86.588	Kryptolebias_marmoratus
ENSSDUG00000019712	cherp	79	87.075	ENSLBEG00000007586	cherp	91	88.049	Labrus_bergylta
ENSSDUG00000019712	cherp	79	69.961	ENSLACG00000018221	CHERP	100	65.947	Latimeria_chalumnae
ENSSDUG00000019712	cherp	99	73.950	ENSLOCG00000003654	cherp	99	71.176	Lepisosteus_oculatus
ENSSDUG00000019712	cherp	79	68.758	ENSLAFG00000009096	CHERP	100	68.206	Loxodonta_africana
ENSSDUG00000019712	cherp	79	67.571	ENSMFAG00000033267	CHERP	99	66.772	Macaca_fascicularis
ENSSDUG00000019712	cherp	98	66.414	ENSMMUG00000012958	CHERP	82	67.932	Macaca_mulatta
ENSSDUG00000019712	cherp	79	67.571	ENSMNEG00000004125	CHERP	99	66.772	Macaca_nemestrina
ENSSDUG00000019712	cherp	70	84.768	ENSMLEG00000044337	CHERP	99	72.171	Mandrillus_leucophaeus
ENSSDUG00000019712	cherp	100	89.608	ENSMAMG00000022269	cherp	100	90.032	Mastacembelus_armatus
ENSSDUG00000019712	cherp	100	91.711	ENSMZEG00005018014	cherp	100	91.605	Maylandia_zebra
ENSSDUG00000019712	cherp	69	70.079	ENSMGAG00000005571	CHERP	93	65.311	Meleagris_gallopavo
ENSSDUG00000019712	cherp	79	68.351	ENSMAUG00000015856	Cherp	99	67.474	Mesocricetus_auratus
ENSSDUG00000019712	cherp	79	70.241	ENSMICG00000004577	CHERP	100	67.338	Microcebus_murinus
ENSSDUG00000019712	cherp	79	69.366	ENSMOCG00000014697	Cherp	99	68.264	Microtus_ochrogaster
ENSSDUG00000019712	cherp	99	86.825	ENSMMOG00000008525	cherp	97	86.285	Mola_mola
ENSSDUG00000019712	cherp	79	69.401	ENSMODG00000014938	CHERP	100	67.259	Monodelphis_domestica
ENSSDUG00000019712	cherp	100	89.714	ENSMALG00000020688	cherp	100	90.456	Monopterus_albus
ENSSDUG00000019712	cherp	79	68.831	MGP_CAROLIEiJ_G0031220	Cherp	99	67.903	Mus_caroli
ENSSDUG00000019712	cherp	79	68.872	ENSMUSG00000052488	Cherp	99	66.948	Mus_musculus
ENSSDUG00000019712	cherp	79	68.514	MGP_PahariEiJ_G0021685	Cherp	99	67.519	Mus_pahari
ENSSDUG00000019712	cherp	79	68.750	MGP_SPRETEiJ_G0032341	Cherp	99	67.687	Mus_spretus
ENSSDUG00000019712	cherp	79	69.382	ENSMPUG00000016023	CHERP	77	69.629	Mustela_putorius_furo
ENSSDUG00000019712	cherp	79	65.046	ENSMLUG00000013881	CHERP	99	62.714	Myotis_lucifugus
ENSSDUG00000019712	cherp	79	70.182	ENSNGAG00000023323	Cherp	99	68.875	Nannospalax_galili
ENSSDUG00000019712	cherp	100	85.106	ENSNBRG00000001914	cherp	98	82.658	Neolamprologus_brichardi
ENSSDUG00000019712	cherp	99	61.674	ENSNLEG00000005536	CHERP	99	67.804	Nomascus_leucogenys
ENSSDUG00000019712	cherp	69	77.740	ENSMEUG00000010840	CHERP	91	77.740	Notamacropus_eugenii
ENSSDUG00000019712	cherp	79	69.241	ENSODEG00000001528	CHERP	81	68.133	Octodon_degus
ENSSDUG00000019712	cherp	100	91.392	ENSONIG00000007686	cherp	100	91.286	Oreochromis_niloticus
ENSSDUG00000019712	cherp	100	83.854	ENSORLG00000000138	cherp	100	82.454	Oryzias_latipes
ENSSDUG00000019712	cherp	100	83.638	ENSORLG00020013142	cherp	100	82.239	Oryzias_latipes_hni
ENSSDUG00000019712	cherp	100	83.531	ENSORLG00015008911	cherp	100	82.131	Oryzias_latipes_hsok
ENSSDUG00000019712	cherp	99	81.857	ENSOMEG00000016947	cherp	99	83.117	Oryzias_melastigma
ENSSDUG00000019712	cherp	79	67.320	ENSOGAG00000005834	CHERP	79	67.596	Otolemur_garnettii
ENSSDUG00000019712	cherp	79	61.569	ENSOARG00000018876	CHERP	78	61.325	Ovis_aries
ENSSDUG00000019712	cherp	79	67.655	ENSPPAG00000029195	CHERP	99	67.018	Pan_paniscus
ENSSDUG00000019712	cherp	79	68.653	ENSPPRG00000003275	CHERP	99	67.548	Panthera_pardus
ENSSDUG00000019712	cherp	79	68.676	ENSPTRG00000010647	CHERP	99	67.804	Pan_troglodytes
ENSSDUG00000019712	cherp	79	67.571	ENSPANG00000011698	CHERP	99	66.772	Papio_anubis
ENSSDUG00000019712	cherp	77	67.141	ENSPKIG00000000423	cherp	98	66.404	Paramormyrops_kingsleyae
ENSSDUG00000019712	cherp	98	66.845	ENSPSIG00000011974	CHERP	100	64.667	Pelodiscus_sinensis
ENSSDUG00000019712	cherp	98	73.370	ENSPMGG00000023606	cherp	99	72.253	Periophthalmus_magnuspinnatus
ENSSDUG00000019712	cherp	79	68.116	ENSPEMG00000011238	Cherp	99	67.469	Peromyscus_maniculatus_bairdii
ENSSDUG00000019712	cherp	79	68.898	ENSPCIG00000019615	CHERP	95	67.474	Phascolarctos_cinereus
ENSSDUG00000019712	cherp	99	84.599	ENSPFOG00000016899	cherp	99	84.382	Poecilia_formosa
ENSSDUG00000019712	cherp	86	82.161	ENSPMEG00000002214	cherp	98	81.688	Poecilia_mexicana
ENSSDUG00000019712	cherp	99	84.799	ENSPREG00000020774	cherp	99	84.582	Poecilia_reticulata
ENSSDUG00000019712	cherp	79	67.919	ENSPPYG00000009691	CHERP	99	65.916	Pongo_abelii
ENSSDUG00000019712	cherp	87	88.608	ENSPCAG00000001337	CHERP	89	87.500	Procavia_capensis
ENSSDUG00000019712	cherp	55	94.643	ENSPCOG00000022788	CHERP	99	89.552	Propithecus_coquereli
ENSSDUG00000019712	cherp	87	88.608	ENSPVAG00000004320	CHERP	89	87.500	Pteropus_vampyrus
ENSSDUG00000019712	cherp	100	91.498	ENSPNYG00000003942	cherp	100	91.392	Pundamilia_nyererei
ENSSDUG00000019712	cherp	80	74.585	ENSPNAG00000017179	cherp	100	71.712	Pygocentrus_nattereri
ENSSDUG00000019712	cherp	79	68.571	ENSRNOG00000012323	Cherp	99	67.937	Rattus_norvegicus
ENSSDUG00000019712	cherp	79	68.676	ENSRBIG00000038621	CHERP	99	67.628	Rhinopithecus_bieti
ENSSDUG00000019712	cherp	79	67.571	ENSRROG00000040770	CHERP	99	66.772	Rhinopithecus_roxellana
ENSSDUG00000019712	cherp	79	67.912	ENSSBOG00000014492	CHERP	99	67.123	Saimiri_boliviensis_boliviensis
ENSSDUG00000019712	cherp	78	68.602	ENSSHAG00000010752	CHERP	99	66.884	Sarcophilus_harrisii
ENSSDUG00000019712	cherp	65	83.544	ENSSFOG00015008022	cherp	84	79.257	Scleropages_formosus
ENSSDUG00000019712	cherp	100	86.181	ENSSMAG00000005362	cherp	100	88.502	Scophthalmus_maximus
ENSSDUG00000019712	cherp	100	98.725	ENSSLDG00000012659	cherp	100	98.725	Seriola_lalandi_dorsalis
ENSSDUG00000019712	cherp	99	67.025	ENSSPUG00000008901	CHERP	99	66.058	Sphenodon_punctatus
ENSSDUG00000019712	cherp	100	92.455	ENSSPAG00000010681	cherp	100	92.455	Stegastes_partitus
ENSSDUG00000019712	cherp	79	69.382	ENSSSCG00000013860	CHERP	99	68.511	Sus_scrofa
ENSSDUG00000019712	cherp	79	68.484	ENSTGUG00000000680	CHERP	99	66.346	Taeniopygia_guttata
ENSSDUG00000019712	cherp	100	79.267	ENSTRUG00000007429	cherp	100	80.524	Takifugu_rubripes
ENSSDUG00000019712	cherp	99	78.890	ENSTNIG00000003363	cherp	99	81.284	Tetraodon_nigroviridis
ENSSDUG00000019712	cherp	69	69.531	ENSTTRG00000015006	CHERP	89	69.531	Tursiops_truncatus
ENSSDUG00000019712	cherp	99	62.619	ENSUAMG00000017295	CHERP	80	67.667	Ursus_americanus
ENSSDUG00000019712	cherp	79	68.305	ENSVVUG00000016546	CHERP	99	67.159	Vulpes_vulpes
ENSSDUG00000019712	cherp	99	64.657	ENSXETG00000002072	cherp	97	66.454	Xenopus_tropicalis