EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000019738 (Gene tree)
Gene ID: 111221504
Gene Symbol: si:dkey-13a21.4
Alias: zgc:110195
Full Name: ras-related protein rab7-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 4167 bases
Position: chrBDQW01000088.1:7507242-7511408
Accession: 111221504
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000027267	MMR_HSR1	PF01926.23	1.6e-06	1	1
ENSSDUP00000027258	MMR_HSR1	PF01926.23	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000027741	-	2782	-	ENSSDUP00000027258	202 (aa)	-	-
ENSSDUT00000027750	-	777	XM_022744886	ENSSDUP00000027267	204 (aa)	XP_022600607	UPI000BBEEBC4

Gene Model

Click here to download ENSSDUG00000019738's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04137	Mitophagy - animal	KEGG
sdu04140	Autophagy - animal	KEGG
sdu04144	Endocytosis	KEGG
sdu04145	Phagosome	KEGG
sdu05132	Salmonella infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000019738's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000019738	si:dkey-13a21.4	82	53.614	ENSSDUG00000007575	rab9b	83	52.976
ENSSDUG00000019738	si:dkey-13a21.4	79	36.646	ENSSDUG00000004698	rab1ba	79	36.420
ENSSDUG00000019738	si:dkey-13a21.4	83	38.690	ENSSDUG00000005960	rab18b	80	38.922
ENSSDUG00000019738	si:dkey-13a21.4	78	34.375	ENSSDUG00000002934	-	71	34.375
ENSSDUG00000019738	si:dkey-13a21.4	85	34.286	ENSSDUG00000004551	rab14	80	34.286
ENSSDUG00000019738	si:dkey-13a21.4	99	34.300	ENSSDUG00000023508	rab23	86	34.300
ENSSDUG00000019738	si:dkey-13a21.4	96	34.000	ENSSDUG00000018970	RAB6B	92	34.000
ENSSDUG00000019738	si:dkey-13a21.4	84	32.164	ENSSDUG00000010675	si:ch73-116o1.2	87	30.928
ENSSDUG00000019738	si:dkey-13a21.4	86	40.341	ENSSDUG00000013325	rab30	85	40.341
ENSSDUG00000019738	si:dkey-13a21.4	89	36.066	ENSSDUG00000006307	-	93	36.066
ENSSDUG00000019738	si:dkey-13a21.4	80	30.488	ENSSDUG00000009122	rheb	86	30.488
ENSSDUG00000019738	si:dkey-13a21.4	79	32.738	ENSSDUG00000022959	rasl11b	66	32.738
ENSSDUG00000019738	si:dkey-13a21.4	83	36.310	ENSSDUG00000013724	rab2a	76	37.821
ENSSDUG00000019738	si:dkey-13a21.4	96	30.882	ENSSDUG00000002580	rab11a	93	30.882
ENSSDUG00000019738	si:dkey-13a21.4	82	37.278	ENSSDUG00000006260	rab25b	85	37.278
ENSSDUG00000019738	si:dkey-13a21.4	76	40.000	ENSSDUG00000006543	RAB29	78	40.000
ENSSDUG00000019738	si:dkey-13a21.4	90	48.187	ENSSDUG00000005037	-	91	48.187
ENSSDUG00000019738	si:dkey-13a21.4	87	35.196	ENSSDUG00000009835	rab5aa	81	35.196
ENSSDUG00000019738	si:dkey-13a21.4	77	38.608	ENSSDUG00000014091	-	73	38.608
ENSSDUG00000019738	si:dkey-13a21.4	92	34.555	ENSSDUG00000009251	rab6bb	89	34.555
ENSSDUG00000019738	si:dkey-13a21.4	93	35.321	ENSSDUG00000019885	-	88	35.321
ENSSDUG00000019738	si:dkey-13a21.4	72	30.345	ENSSDUG00000017779	kras	81	30.769
ENSSDUG00000019738	si:dkey-13a21.4	82	33.333	ENSSDUG00000003036	dnajc27	61	33.333
ENSSDUG00000019738	si:dkey-13a21.4	78	42.405	ENSSDUG00000004950	rab35b	76	42.675
ENSSDUG00000019738	si:dkey-13a21.4	96	33.831	ENSSDUG00000013496	-	94	33.831
ENSSDUG00000019738	si:dkey-13a21.4	82	33.929	ENSSDUG00000009735	rab25a	79	33.728
ENSSDUG00000019738	si:dkey-13a21.4	80	36.196	ENSSDUG00000023008	rab5c	73	35.976
ENSSDUG00000019738	si:dkey-13a21.4	84	37.288	ENSSDUG00000003823	rab18a	85	37.288
ENSSDUG00000019738	si:dkey-13a21.4	85	34.286	ENSSDUG00000004119	rab36	57	34.286
ENSSDUG00000019738	si:dkey-13a21.4	56	30.435	ENSSDUG00000017824	-	85	31.746
ENSSDUG00000019738	si:dkey-13a21.4	79	38.509	ENSSDUG00000016888	rab1ab	72	38.509
ENSSDUG00000019738	si:dkey-13a21.4	72	31.724	ENSSDUG00000019086	hrasb	96	30.645
ENSSDUG00000019738	si:dkey-13a21.4	85	35.429	ENSSDUG00000013050	-	80	35.429
ENSSDUG00000019738	si:dkey-13a21.4	96	34.826	ENSSDUG00000021882	rab6ba	94	34.826
ENSSDUG00000019738	si:dkey-13a21.4	80	30.488	ENSSDUG00000016858	-	86	30.488
ENSSDUG00000019738	si:dkey-13a21.4	90	55.676	ENSSDUG00000008011	-	89	55.676
ENSSDUG00000019738	si:dkey-13a21.4	78	35.625	ENSSDUG00000006278	rab11al	72	35.404
ENSSDUG00000019738	si:dkey-13a21.4	79	38.509	ENSSDUG00000022535	RAB1A	78	38.509
ENSSDUG00000019738	si:dkey-13a21.4	74	31.126	ENSSDUG00000014082	si:cabz01085950.1	73	31.126
ENSSDUG00000019738	si:dkey-13a21.4	82	51.807	ENSSDUG00000003386	rab9a	82	51.807
ENSSDUG00000019738	si:dkey-13a21.4	84	33.918	ENSSDUG00000014765	rabl2	73	33.918
ENSSDUG00000019738	si:dkey-13a21.4	77	39.490	ENSSDUG00000004445	zgc:171927	72	39.241
ENSSDUG00000019738	si:dkey-13a21.4	78	38.994	ENSSDUG00000011851	rab42a	72	38.994
ENSSDUG00000019738	si:dkey-13a21.4	76	41.290	ENSSDUG00000008151	zgc:101559	65	41.290
ENSSDUG00000019738	si:dkey-13a21.4	84	33.526	ENSSDUG00000004633	RAB15	80	33.526
ENSSDUG00000019738	si:dkey-13a21.4	78	34.375	ENSSDUG00000013558	rab11bb	71	34.375
ENSSDUG00000019738	si:dkey-13a21.4	84	39.306	ENSSDUG00000005719	si:dkey-16l2.16	80	39.306
ENSSDUG00000019738	si:dkey-13a21.4	89	32.967	ENSSDUG00000016760	rab34b	55	34.078
ENSSDUG00000019738	si:dkey-13a21.4	84	35.838	ENSSDUG00000005627	rab15	79	35.838
ENSSDUG00000019738	si:dkey-13a21.4	96	37.745	ENSSDUG00000013968	rab33a	83	37.745
ENSSDUG00000019738	si:dkey-13a21.4	80	31.098	ENSSDUG00000007311	rhebl1	86	31.098
ENSSDUG00000019738	si:dkey-13a21.4	92	34.021	ENSSDUG00000010942	rab34a	72	34.021
ENSSDUG00000019738	si:dkey-13a21.4	78	34.375	ENSSDUG00000002965	rab11ba	71	34.375
ENSSDUG00000019738	si:dkey-13a21.4	76	32.121	ENSSDUG00000015078	rasl11a	62	32.121
ENSSDUG00000019738	si:dkey-13a21.4	65	38.971	ENSSDUG00000006618	RAB17	58	38.971
ENSSDUG00000019738	si:dkey-13a21.4	82	38.095	ENSSDUG00000008505	rab12	68	38.095
ENSSDUG00000019738	si:dkey-13a21.4	73	40.268	ENSSDUG00000001791	rab33ba	61	40.000
ENSSDUG00000019738	si:dkey-13a21.4	72	30.822	ENSSDUG00000023163	rras2	76	31.210
ENSSDUG00000019738	si:dkey-13a21.4	95	36.082	ENSSDUG00000017131	rab22a	97	36.082

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000019738	si:dkey-13a21.4	100	91.667	ENSACIG00000011024	si:dkey-13a21.4	100	91.667	Amphilophus_citrinellus
ENSSDUG00000019738	si:dkey-13a21.4	100	87.255	ENSAOCG00000020491	si:dkey-13a21.4	100	87.255	Amphiprion_ocellaris
ENSSDUG00000019738	si:dkey-13a21.4	100	87.255	ENSAPEG00000023338	si:dkey-13a21.4	92	87.255	Amphiprion_percula
ENSSDUG00000019738	si:dkey-13a21.4	100	84.804	ENSATEG00000014958	si:dkey-13a21.4	100	84.804	Anabas_testudineus
ENSSDUG00000019738	si:dkey-13a21.4	96	53.333	ENSACAG00000012345	-	97	53.333	Anolis_carolinensis
ENSSDUG00000019738	si:dkey-13a21.4	100	90.196	ENSACLG00000021109	si:dkey-13a21.4	99	90.196	Astatotilapia_calliptera
ENSSDUG00000019738	si:dkey-13a21.4	96	54.455	ENSAMXG00000032663	si:dkey-13a21.4	93	54.455	Astyanax_mexicanus
ENSSDUG00000019738	si:dkey-13a21.4	89	56.831	WBGene00004271	rab-7	100	51.675	Caenorhabditis_elegans
ENSSDUG00000019738	si:dkey-13a21.4	100	86.765	ENSCVAG00000001150	si:dkey-13a21.4	100	86.765	Cyprinodon_variegatus
ENSSDUG00000019738	si:dkey-13a21.4	100	62.255	ENSDARG00000026098	si:dkey-13a21.4	99	62.255	Danio_rerio
ENSSDUG00000019738	si:dkey-13a21.4	89	52.717	ENSDNOG00000043559	-	96	50.505	Dasypus_novemcinctus
ENSSDUG00000019738	si:dkey-13a21.4	100	83.902	ENSFHEG00000002502	si:dkey-13a21.4	100	83.902	Fundulus_heteroclitus
ENSSDUG00000019738	si:dkey-13a21.4	100	82.843	ENSGAFG00000020102	si:dkey-13a21.4	100	82.843	Gambusia_affinis
ENSSDUG00000019738	si:dkey-13a21.4	100	90.686	ENSHBUG00000014023	si:dkey-13a21.4	99	90.686	Haplochromis_burtoni
ENSSDUG00000019738	si:dkey-13a21.4	87	81.250	ENSKMAG00000021039	si:dkey-13a21.4	74	81.250	Kryptolebias_marmoratus
ENSSDUG00000019738	si:dkey-13a21.4	100	85.784	ENSLBEG00000018180	si:dkey-13a21.4	100	85.784	Labrus_bergylta
ENSSDUG00000019738	si:dkey-13a21.4	96	61.421	ENSLOCG00000014749	si:dkey-13a21.4	96	61.421	Lepisosteus_oculatus
ENSSDUG00000019738	si:dkey-13a21.4	86	54.286	ENSLAFG00000028984	-	85	54.286	Loxodonta_africana
ENSSDUG00000019738	si:dkey-13a21.4	100	87.255	ENSMAMG00000021095	si:dkey-13a21.4	100	87.255	Mastacembelus_armatus
ENSSDUG00000019738	si:dkey-13a21.4	100	90.686	ENSMZEG00005010220	si:dkey-13a21.4	99	90.686	Maylandia_zebra
ENSSDUG00000019738	si:dkey-13a21.4	99	90.640	ENSNBRG00000023214	si:dkey-13a21.4	99	90.640	Neolamprologus_brichardi
ENSSDUG00000019738	si:dkey-13a21.4	100	90.196	ENSONIG00000020296	si:dkey-13a21.4	100	90.196	Oreochromis_niloticus
ENSSDUG00000019738	si:dkey-13a21.4	100	81.373	ENSORLG00000025098	si:dkey-13a21.4	100	81.373	Oryzias_latipes
ENSSDUG00000019738	si:dkey-13a21.4	100	81.373	ENSORLG00020019465	si:dkey-13a21.4	100	81.373	Oryzias_latipes_hni
ENSSDUG00000019738	si:dkey-13a21.4	100	81.863	ENSORLG00015015121	si:dkey-13a21.4	100	81.863	Oryzias_latipes_hsok
ENSSDUG00000019738	si:dkey-13a21.4	96	64.467	ENSPKIG00000008691	si:dkey-13a21.4	96	64.467	Paramormyrops_kingsleyae
ENSSDUG00000019738	si:dkey-13a21.4	99	77.228	ENSPMGG00000023170	si:dkey-13a21.4	96	77.228	Periophthalmus_magnuspinnatus
ENSSDUG00000019738	si:dkey-13a21.4	100	84.314	ENSPFOG00000015409	si:dkey-13a21.4	100	84.314	Poecilia_formosa
ENSSDUG00000019738	si:dkey-13a21.4	100	84.314	ENSPLAG00000019688	si:dkey-13a21.4	100	84.314	Poecilia_latipinna
ENSSDUG00000019738	si:dkey-13a21.4	100	84.314	ENSPMEG00000019159	si:dkey-13a21.4	100	84.314	Poecilia_mexicana
ENSSDUG00000019738	si:dkey-13a21.4	100	82.843	ENSPREG00000022241	si:dkey-13a21.4	100	82.843	Poecilia_reticulata
ENSSDUG00000019738	si:dkey-13a21.4	100	90.196	ENSPNYG00000018613	si:dkey-13a21.4	99	90.196	Pundamilia_nyererei
ENSSDUG00000019738	si:dkey-13a21.4	100	46.190	YML001W	YPT7	100	46.190	Saccharomyces_cerevisiae
ENSSDUG00000019738	si:dkey-13a21.4	96	63.776	ENSSFOG00015009566	si:dkey-13a21.4	96	63.776	Scleropages_formosus
ENSSDUG00000019738	si:dkey-13a21.4	98	87.940	ENSSMAG00000013945	si:dkey-13a21.4	97	87.940	Scophthalmus_maximus
ENSSDUG00000019738	si:dkey-13a21.4	100	97.059	ENSSLDG00000011597	si:dkey-13a21.4	100	97.059	Seriola_lalandi_dorsalis
ENSSDUG00000019738	si:dkey-13a21.4	96	51.282	ENSXETG00000014257	mgc75872	97	51.282	Xenopus_tropicalis