EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000019865 (Gene tree)
Gene ID: 111234844
Gene Symbol: pop4
Alias: zgc:110597
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 8710 bases
Position: chrBDQW01000465.1:293800-302509
Accession: 111234844
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000027450	UPF0086	PF01868.16	5.5e-27	1	1
ENSSDUP00000027468	UPF0086	PF01868.16	1.3e-15	1	1
ENSSDUP00000027441	UPF0086	PF01868.16	1.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000027925	-	4347	-	ENSSDUP00000027441	234 (aa)	-	-
ENSSDUT00000027952	-	4082	-	ENSSDUP00000027468	227 (aa)	-	-
ENSSDUT00000027934	-	4274	XM_022763035	ENSSDUP00000027450	249 (aa)	XP_022618756	-

Gene Model

Click here to download ENSSDUG00000019865's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG
sdu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000019865's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000019865	pop4	82	61.765	ENSG00000105171	POP4	99	72.632	Homo_sapiens
ENSSDUG00000019865	pop4	84	56.667	ENSAMEG00000003172	-	94	56.667	Ailuropoda_melanoleuca
ENSSDUG00000019865	pop4	84	59.809	ENSAMEG00000018329	-	94	60.287	Ailuropoda_melanoleuca
ENSSDUG00000019865	pop4	89	79.730	ENSACIG00000008358	pop4	100	79.730	Amphilophus_citrinellus
ENSSDUG00000019865	pop4	81	83.085	ENSAOCG00000010116	pop4	98	83.085	Amphiprion_ocellaris
ENSSDUG00000019865	pop4	92	81.140	ENSAPEG00000002829	pop4	96	81.140	Amphiprion_percula
ENSSDUG00000019865	pop4	89	83.258	ENSATEG00000013028	pop4	99	83.258	Anabas_testudineus
ENSSDUG00000019865	pop4	82	57.843	ENSAPLG00000014051	POP4	98	58.824	Anas_platyrhynchos
ENSSDUG00000019865	pop4	84	62.201	ENSANAG00000020295	POP4	94	62.679	Aotus_nancymaae
ENSSDUG00000019865	pop4	89	78.281	ENSACLG00000000526	pop4	99	78.281	Astatotilapia_calliptera
ENSSDUG00000019865	pop4	87	66.204	ENSAMXG00000002899	pop4	97	66.204	Astyanax_mexicanus
ENSSDUG00000019865	pop4	84	62.019	ENSBTAG00000002223	POP4	94	62.679	Bos_taurus
ENSSDUG00000019865	pop4	82	60.784	ENSCJAG00000046750	POP4	95	68.023	Callithrix_jacchus
ENSSDUG00000019865	pop4	69	65.698	ENSCAFG00000007630	POP4	93	66.860	Canis_familiaris
ENSSDUG00000019865	pop4	84	60.577	ENSCHIG00000016743	POP4	94	61.244	Capra_hircus
ENSSDUG00000019865	pop4	83	61.650	ENSTSYG00000003488	POP4	93	62.136	Carlito_syrichta
ENSSDUG00000019865	pop4	84	43.269	ENSCAPG00000011105	POP4	94	43.541	Cavia_aperea
ENSSDUG00000019865	pop4	84	60.096	ENSCPOG00000002992	POP4	94	60.287	Cavia_porcellus
ENSSDUG00000019865	pop4	82	61.765	ENSCCAG00000020285	-	92	61.765	Cebus_capucinus
ENSSDUG00000019865	pop4	77	54.450	ENSCCAG00000034244	-	87	54.450	Cebus_capucinus
ENSSDUG00000019865	pop4	82	62.927	ENSCATG00000036022	POP4	99	73.684	Cercocebus_atys
ENSSDUG00000019865	pop4	84	60.096	ENSCLAG00000013162	POP4	94	60.766	Chinchilla_lanigera
ENSSDUG00000019865	pop4	82	62.255	ENSCSAG00000004868	POP4	93	62.745	Chlorocebus_sabaeus
ENSSDUG00000019865	pop4	84	44.976	ENSCHOG00000002071	POP4	95	45.455	Choloepus_hoffmanni
ENSSDUG00000019865	pop4	89	56.109	ENSCPBG00000016132	POP4	99	56.561	Chrysemys_picta_bellii
ENSSDUG00000019865	pop4	76	31.443	ENSCING00000023871	-	95	31.443	Ciona_intestinalis
ENSSDUG00000019865	pop4	80	63.000	ENSCANG00000005924	POP4	98	63.500	Colobus_angolensis_palliatus
ENSSDUG00000019865	pop4	82	61.275	ENSCGRG00001017185	Pop4	92	62.255	Cricetulus_griseus_chok1gshd
ENSSDUG00000019865	pop4	82	61.275	ENSCGRG00000008155	Pop4	92	62.255	Cricetulus_griseus_crigri
ENSSDUG00000019865	pop4	88	72.273	ENSCSEG00000002946	pop4	99	73.636	Cynoglossus_semilaevis
ENSSDUG00000019865	pop4	89	57.207	ENSCVAG00000018602	POP4	96	57.207	Cyprinodon_variegatus
ENSSDUG00000019865	pop4	89	65.611	ENSDARG00000101472	pop4	99	66.516	Danio_rerio
ENSSDUG00000019865	pop4	84	60.766	ENSDNOG00000047663	POP4	83	61.244	Dasypus_novemcinctus
ENSSDUG00000019865	pop4	70	57.862	ENSDORG00000008577	Pop4	91	58.491	Dipodomys_ordii
ENSSDUG00000019865	pop4	84	50.481	ENSETEG00000003607	POP4	95	50.962	Echinops_telfairi
ENSSDUG00000019865	pop4	80	39.151	ENSEBUG00000004305	pop4	92	40.566	Eptatretus_burgeri
ENSSDUG00000019865	pop4	82	40.777	ENSEBUG00000008575	pop4	92	40.777	Eptatretus_burgeri
ENSSDUG00000019865	pop4	85	42.667	ENSEBUG00000010447	pop4	87	44.000	Eptatretus_burgeri
ENSSDUG00000019865	pop4	84	63.462	ENSECAG00000020206	POP4	77	63.462	Equus_caballus
ENSSDUG00000019865	pop4	80	45.729	ENSEEUG00000013109	POP4	99	46.231	Erinaceus_europaeus
ENSSDUG00000019865	pop4	89	64.706	ENSELUG00000019812	pop4	99	65.158	Esox_lucius
ENSSDUG00000019865	pop4	84	60.766	ENSFCAG00000001619	POP4	94	61.244	Felis_catus
ENSSDUG00000019865	pop4	89	58.108	ENSFALG00000000206	POP4	98	59.009	Ficedula_albicollis
ENSSDUG00000019865	pop4	84	60.096	ENSFDAG00000017859	POP4	94	60.287	Fukomys_damarensis
ENSSDUG00000019865	pop4	86	68.056	ENSFHEG00000012745	pop4	96	68.056	Fundulus_heteroclitus
ENSSDUG00000019865	pop4	81	65.672	ENSGMOG00000000335	pop4	99	65.672	Gadus_morhua
ENSSDUG00000019865	pop4	89	54.751	ENSGALG00000041972	POP4	92	55.656	Gallus_gallus
ENSSDUG00000019865	pop4	78	69.492	ENSGAFG00000003571	pop4	98	69.492	Gambusia_affinis
ENSSDUG00000019865	pop4	89	76.923	ENSGACG00000014510	pop4	100	79.348	Gasterosteus_aculeatus
ENSSDUG00000019865	pop4	89	57.014	ENSGAGG00000024544	POP4	79	57.919	Gopherus_agassizii
ENSSDUG00000019865	pop4	82	61.765	ENSGGOG00000038346	POP4	92	62.255	Gorilla_gorilla
ENSSDUG00000019865	pop4	89	78.733	ENSHBUG00000021821	pop4	99	78.733	Haplochromis_burtoni
ENSSDUG00000019865	pop4	84	60.287	ENSHGLG00000015798	POP4	94	60.766	Heterocephalus_glaber_female
ENSSDUG00000019865	pop4	84	60.577	ENSHGLG00100009737	POP4	94	60.766	Heterocephalus_glaber_male
ENSSDUG00000019865	pop4	90	74.107	ENSHCOG00000020937	pop4	100	74.107	Hippocampus_comes
ENSSDUG00000019865	pop4	89	63.514	ENSIPUG00000013652	pop4	99	63.514	Ictalurus_punctatus
ENSSDUG00000019865	pop4	84	62.500	ENSSTOG00000011016	POP4	94	62.679	Ictidomys_tridecemlineatus
ENSSDUG00000019865	pop4	82	60.294	ENSJJAG00000013376	Pop4	92	61.275	Jaculus_jaculus
ENSSDUG00000019865	pop4	90	79.911	ENSKMAG00000012250	pop4	100	79.911	Kryptolebias_marmoratus
ENSSDUG00000019865	pop4	89	74.208	ENSLBEG00000014139	pop4	99	74.208	Labrus_bergylta
ENSSDUG00000019865	pop4	89	73.756	ENSLBEG00000018846	-	99	73.756	Labrus_bergylta
ENSSDUG00000019865	pop4	90	54.018	ENSLACG00000008581	POP4	100	54.464	Latimeria_chalumnae
ENSSDUG00000019865	pop4	89	63.348	ENSLOCG00000005597	pop4	99	63.801	Lepisosteus_oculatus
ENSSDUG00000019865	pop4	84	61.538	ENSLAFG00000000084	POP4	94	61.722	Loxodonta_africana
ENSSDUG00000019865	pop4	82	62.255	ENSMFAG00000029606	POP4	92	62.745	Macaca_fascicularis
ENSSDUG00000019865	pop4	82	61.275	ENSMMUG00000017424	POP4	92	62.745	Macaca_mulatta
ENSSDUG00000019865	pop4	82	61.275	ENSMNEG00000031374	POP4	92	62.745	Macaca_nemestrina
ENSSDUG00000019865	pop4	82	62.255	ENSMLEG00000043454	POP4	92	62.927	Mandrillus_leucophaeus
ENSSDUG00000019865	pop4	89	84.685	ENSMAMG00000011716	pop4	99	84.685	Mastacembelus_armatus
ENSSDUG00000019865	pop4	89	78.281	ENSMZEG00005002360	pop4	99	78.281	Maylandia_zebra
ENSSDUG00000019865	pop4	86	56.542	ENSMGAG00000005337	POP4	95	57.477	Meleagris_gallopavo
ENSSDUG00000019865	pop4	82	62.255	ENSMAUG00000020110	Pop4	92	62.255	Mesocricetus_auratus
ENSSDUG00000019865	pop4	84	58.654	ENSMICG00000035730	POP4	93	59.048	Microcebus_murinus
ENSSDUG00000019865	pop4	89	79.279	ENSMMOG00000015321	pop4	99	79.730	Mola_mola
ENSSDUG00000019865	pop4	84	62.201	ENSMODG00000029406	POP4	90	63.158	Monodelphis_domestica
ENSSDUG00000019865	pop4	90	84.375	ENSMALG00000012571	pop4	100	84.375	Monopterus_albus
ENSSDUG00000019865	pop4	82	61.275	MGP_CAROLIEiJ_G0029600	Pop4	92	62.255	Mus_caroli
ENSSDUG00000019865	pop4	82	61.765	ENSMUSG00000030423	Pop4	92	61.765	Mus_musculus
ENSSDUG00000019865	pop4	82	61.275	MGP_SPRETEiJ_G0030699	Pop4	92	62.439	Mus_spretus
ENSSDUG00000019865	pop4	84	53.333	ENSMPUG00000008063	-	94	54.286	Mustela_putorius_furo
ENSSDUG00000019865	pop4	84	60.766	ENSMPUG00000008041	-	94	61.722	Mustela_putorius_furo
ENSSDUG00000019865	pop4	84	47.143	ENSMLUG00000010774	POP4	94	47.619	Myotis_lucifugus
ENSSDUG00000019865	pop4	50	64.800	ENSMEUG00000003636	-	100	64.800	Notamacropus_eugenii
ENSSDUG00000019865	pop4	80	62.500	ENSOPRG00000004736	POP4	99	63.317	Ochotona_princeps
ENSSDUG00000019865	pop4	84	60.096	ENSODEG00000013025	POP4	98	60.766	Octodon_degus
ENSSDUG00000019865	pop4	90	76.889	ENSONIG00000003458	pop4	99	76.889	Oreochromis_niloticus
ENSSDUG00000019865	pop4	82	62.745	ENSOCUG00000015974	POP4	92	63.235	Oryctolagus_cuniculus
ENSSDUG00000019865	pop4	90	78.027	ENSORLG00000020317	pop4	100	78.027	Oryzias_latipes
ENSSDUG00000019865	pop4	89	79.186	ENSORLG00015011624	pop4	99	79.186	Oryzias_latipes_hsok
ENSSDUG00000019865	pop4	89	76.923	ENSOMEG00000002538	pop4	99	76.923	Oryzias_melastigma
ENSSDUG00000019865	pop4	84	61.244	ENSOGAG00000011168	POP4	94	61.905	Otolemur_garnettii
ENSSDUG00000019865	pop4	80	62.312	ENSOARG00000004041	POP4	89	63.317	Ovis_aries
ENSSDUG00000019865	pop4	82	61.765	ENSPPAG00000040372	POP4	92	62.255	Pan_paniscus
ENSSDUG00000019865	pop4	84	60.766	ENSPPRG00000010502	POP4	94	61.244	Panthera_pardus
ENSSDUG00000019865	pop4	84	60.766	ENSPTIG00000016598	POP4	94	61.244	Panthera_tigris_altaica
ENSSDUG00000019865	pop4	82	61.765	ENSPTRG00000010779	POP4	92	62.255	Pan_troglodytes
ENSSDUG00000019865	pop4	82	62.255	ENSPANG00000008546	POP4	92	62.745	Papio_anubis
ENSSDUG00000019865	pop4	82	64.039	ENSPKIG00000004468	pop4	89	63.725	Paramormyrops_kingsleyae
ENSSDUG00000019865	pop4	93	54.741	ENSPSIG00000015690	POP4	100	60.294	Pelodiscus_sinensis
ENSSDUG00000019865	pop4	82	66.827	ENSPMGG00000008608	pop4	99	69.231	Periophthalmus_magnuspinnatus
ENSSDUG00000019865	pop4	82	51.961	ENSPEMG00000019982	-	92	51.961	Peromyscus_maniculatus_bairdii
ENSSDUG00000019865	pop4	82	61.951	ENSPEMG00000014034	-	93	61.951	Peromyscus_maniculatus_bairdii
ENSSDUG00000019865	pop4	58	65.517	ENSPMAG00000006265	pop4	77	63.158	Petromyzon_marinus
ENSSDUG00000019865	pop4	89	59.729	ENSPCIG00000024738	POP4	95	59.729	Phascolarctos_cinereus
ENSSDUG00000019865	pop4	89	71.946	ENSPFOG00000000925	pop4	99	71.946	Poecilia_formosa
ENSSDUG00000019865	pop4	89	72.398	ENSPLAG00000003161	pop4	99	72.398	Poecilia_latipinna
ENSSDUG00000019865	pop4	89	71.946	ENSPMEG00000002475	pop4	99	71.946	Poecilia_mexicana
ENSSDUG00000019865	pop4	90	70.089	ENSPREG00000022403	pop4	94	70.089	Poecilia_reticulata
ENSSDUG00000019865	pop4	82	62.255	ENSPPYG00000009805	POP4	92	62.745	Pongo_abelii
ENSSDUG00000019865	pop4	82	60.099	ENSPCAG00000007737	POP4	92	60.294	Procavia_capensis
ENSSDUG00000019865	pop4	84	59.615	ENSPCOG00000018055	POP4	94	59.809	Propithecus_coquereli
ENSSDUG00000019865	pop4	84	61.137	ENSPVAG00000006069	POP4	94	61.137	Pteropus_vampyrus
ENSSDUG00000019865	pop4	89	78.733	ENSPNYG00000020038	pop4	99	78.733	Pundamilia_nyererei
ENSSDUG00000019865	pop4	89	64.253	ENSPNAG00000005591	pop4	99	64.253	Pygocentrus_nattereri
ENSSDUG00000019865	pop4	82	61.275	ENSRNOG00000027646	Pop4	92	62.255	Rattus_norvegicus
ENSSDUG00000019865	pop4	72	58.282	ENSRBIG00000044769	POP4	82	66.667	Rhinopithecus_bieti
ENSSDUG00000019865	pop4	82	62.255	ENSRROG00000028903	POP4	92	62.745	Rhinopithecus_roxellana
ENSSDUG00000019865	pop4	51	32.374	YBR257W	-	50	32.374	Saccharomyces_cerevisiae
ENSSDUG00000019865	pop4	82	62.255	ENSSBOG00000032445	POP4	92	62.255	Saimiri_boliviensis_boliviensis
ENSSDUG00000019865	pop4	84	60.766	ENSSHAG00000016888	POP4	94	60.766	Sarcophilus_harrisii
ENSSDUG00000019865	pop4	90	62.832	ENSSFOG00015014556	pop4	99	62.832	Scleropages_formosus
ENSSDUG00000019865	pop4	90	84.375	ENSSMAG00000016611	pop4	100	84.375	Scophthalmus_maximus
ENSSDUG00000019865	pop4	90	97.768	ENSSLDG00000001763	pop4	100	97.768	Seriola_lalandi_dorsalis
ENSSDUG00000019865	pop4	84	60.766	ENSSARG00000004748	POP4	95	61.722	Sorex_araneus
ENSSDUG00000019865	pop4	90	84.375	ENSSPAG00000014364	pop4	100	84.375	Stegastes_partitus
ENSSDUG00000019865	pop4	84	61.058	ENSSSCG00000002854	POP4	94	61.244	Sus_scrofa
ENSSDUG00000019865	pop4	81	58.706	ENSTGUG00000008953	POP4	99	59.701	Taeniopygia_guttata
ENSSDUG00000019865	pop4	82	75.490	ENSTNIG00000006401	pop4	100	75.490	Tetraodon_nigroviridis
ENSSDUG00000019865	pop4	84	61.538	ENSTBEG00000002194	POP4	94	62.201	Tupaia_belangeri
ENSSDUG00000019865	pop4	84	59.809	ENSTTRG00000005882	POP4	94	60.287	Tursiops_truncatus
ENSSDUG00000019865	pop4	84	60.096	ENSUAMG00000003049	-	94	60.287	Ursus_americanus
ENSSDUG00000019865	pop4	84	60.096	ENSUMAG00000007522	-	94	60.287	Ursus_maritimus
ENSSDUG00000019865	pop4	89	57.658	ENSVVUG00000016876	-	73	58.559	Vulpes_vulpes
ENSSDUG00000019865	pop4	86	55.607	ENSXETG00000017598	pop4	96	56.075	Xenopus_tropicalis
ENSSDUG00000019865	pop4	90	69.333	ENSXCOG00000017695	pop4	94	69.333	Xiphophorus_couchianus
ENSSDUG00000019865	pop4	90	69.333	ENSXMAG00000013862	pop4	94	69.333	Xiphophorus_maculatus