EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000020117 (Gene tree)
Gene ID: 111218829
Gene Symbol: ssb
Alias: wu:fb17f11
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7745 bases
Position: chrBDQW01000052.1:11431963-11439707
Accession: 111218829
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000027826	RRM_1	PF00076.22	6.4e-12	1	1
ENSSDUP00000027826	RRM_3	PF08777.11	1.1e-28	1	1
ENSSDUP00000027826	La	PF05383.17	4.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000028317	-	3859	XM_022741305	ENSSDUP00000027826	398 (aa)	XP_022597026	UPI000BBE766F

Gene Model

Click here to download ENSSDUG00000020117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000020117's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000020117	ssb	100	56.479	ENSG00000138385	SSB	98	63.559	Homo_sapiens
ENSSDUG00000020117	ssb	100	89.447	ENSAPOG00000003448	ssb	100	89.447	Acanthochromis_polyacanthus
ENSSDUG00000020117	ssb	100	55.131	ENSAMEG00000010507	SSB	99	55.370	Ailuropoda_melanoleuca
ENSSDUG00000020117	ssb	93	84.865	ENSACIG00000001738	ssb	96	84.865	Amphilophus_citrinellus
ENSSDUG00000020117	ssb	100	90.704	ENSAOCG00000020398	ssb	100	90.704	Amphiprion_ocellaris
ENSSDUG00000020117	ssb	100	90.704	ENSAPEG00000020395	ssb	100	90.704	Amphiprion_percula
ENSSDUG00000020117	ssb	100	91.228	ENSATEG00000016884	ssb	100	91.228	Anabas_testudineus
ENSSDUG00000020117	ssb	100	54.610	ENSAPLG00000006109	SSB	99	55.213	Anas_platyrhynchos
ENSSDUG00000020117	ssb	100	56.204	ENSACAG00000017008	SSB	99	56.691	Anolis_carolinensis
ENSSDUG00000020117	ssb	100	51.724	ENSANAG00000027195	-	99	50.739	Aotus_nancymaae
ENSSDUG00000020117	ssb	100	80.952	ENSACLG00000010798	ssb	100	80.702	Astatotilapia_calliptera
ENSSDUG00000020117	ssb	100	60.488	ENSAMXG00000012606	ssb	100	61.707	Astyanax_mexicanus
ENSSDUG00000020117	ssb	100	57.531	ENSBTAG00000008716	SSB	99	57.284	Bos_taurus
ENSSDUG00000020117	ssb	75	34.967	WBGene00016653	C44E4.4	76	36.928	Caenorhabditis_elegans
ENSSDUG00000020117	ssb	100	57.143	ENSCJAG00000045073	SSB	99	56.897	Callithrix_jacchus
ENSSDUG00000020117	ssb	100	56.757	ENSCAFG00000012418	SSB	99	56.511	Canis_familiaris
ENSSDUG00000020117	ssb	100	56.757	ENSCAFG00020002900	SSB	99	56.511	Canis_lupus_dingo
ENSSDUG00000020117	ssb	100	53.846	ENSCHIG00000022196	-	99	53.333	Capra_hircus
ENSSDUG00000020117	ssb	100	57.389	ENSCHIG00000022624	-	99	57.143	Capra_hircus
ENSSDUG00000020117	ssb	99	57.284	ENSTSYG00000000097	SSB	99	57.037	Carlito_syrichta
ENSSDUG00000020117	ssb	100	58.128	ENSCPOG00000003338	SSB	99	57.882	Cavia_porcellus
ENSSDUG00000020117	ssb	100	57.143	ENSCCAG00000035147	SSB	99	56.897	Cebus_capucinus
ENSSDUG00000020117	ssb	99	43.142	ENSCATG00000042909	-	98	42.893	Cercocebus_atys
ENSSDUG00000020117	ssb	83	48.980	ENSCATG00000036701	SSB	83	53.265	Cercocebus_atys
ENSSDUG00000020117	ssb	100	58.128	ENSCLAG00000015617	-	99	57.882	Chinchilla_lanigera
ENSSDUG00000020117	ssb	100	57.143	ENSCSAG00000015200	SSB	88	56.897	Chlorocebus_sabaeus
ENSSDUG00000020117	ssb	98	51.637	ENSCSAG00000018390	-	99	51.385	Chlorocebus_sabaeus
ENSSDUG00000020117	ssb	100	57.882	ENSCHOG00000007763	SSB	99	57.635	Choloepus_hoffmanni
ENSSDUG00000020117	ssb	100	60.000	ENSCPBG00000006519	SSB	99	60.732	Chrysemys_picta_bellii
ENSSDUG00000020117	ssb	94	45.238	ENSCANG00000028838	-	89	44.974	Colobus_angolensis_palliatus
ENSSDUG00000020117	ssb	100	49.383	ENSCANG00000033240	-	99	49.136	Colobus_angolensis_palliatus
ENSSDUG00000020117	ssb	100	57.143	ENSCANG00000027695	SSB	99	56.897	Colobus_angolensis_palliatus
ENSSDUG00000020117	ssb	100	52.580	ENSCGRG00001024831	Ssb	99	53.317	Cricetulus_griseus_chok1gshd
ENSSDUG00000020117	ssb	100	52.580	ENSCGRG00000005387	Ssb	99	53.317	Cricetulus_griseus_crigri
ENSSDUG00000020117	ssb	99	86.683	ENSCSEG00000011599	ssb	99	86.683	Cynoglossus_semilaevis
ENSSDUG00000020117	ssb	100	83.000	ENSCVAG00000021558	ssb	100	86.750	Cyprinodon_variegatus
ENSSDUG00000020117	ssb	100	65.185	ENSDARG00000029252	ssb	100	63.951	Danio_rerio
ENSSDUG00000020117	ssb	100	57.882	ENSDNOG00000013450	SSB	99	57.635	Dasypus_novemcinctus
ENSSDUG00000020117	ssb	100	54.074	ENSDORG00000005543	Ssb	99	54.074	Dipodomys_ordii
ENSSDUG00000020117	ssb	85	35.028	FBgn0011638	La	78	36.137	Drosophila_melanogaster
ENSSDUG00000020117	ssb	51	62.376	ENSETEG00000004614	-	52	62.376	Echinops_telfairi
ENSSDUG00000020117	ssb	99	44.750	ENSEBUG00000001237	ssb	96	44.246	Eptatretus_burgeri
ENSSDUG00000020117	ssb	100	57.882	ENSEASG00005022835	SSB	99	57.882	Equus_asinus_asinus
ENSSDUG00000020117	ssb	100	57.882	ENSECAG00000018495	SSB	99	57.882	Equus_caballus
ENSSDUG00000020117	ssb	77	49.026	ENSEEUG00000008077	SSB	78	49.026	Erinaceus_europaeus
ENSSDUG00000020117	ssb	100	72.457	ENSELUG00000020929	ssb	100	72.457	Esox_lucius
ENSSDUG00000020117	ssb	100	57.985	ENSFCAG00000011601	SSB	99	57.740	Felis_catus
ENSSDUG00000020117	ssb	99	58.722	ENSFALG00000000930	SSB	99	58.231	Ficedula_albicollis
ENSSDUG00000020117	ssb	100	58.128	ENSFDAG00000000598	SSB	99	57.882	Fukomys_damarensis
ENSSDUG00000020117	ssb	75	82.119	ENSFHEG00000003268	ssb	94	81.107	Fundulus_heteroclitus
ENSSDUG00000020117	ssb	98	74.500	ENSGMOG00000002664	ssb	100	74.500	Gadus_morhua
ENSSDUG00000020117	ssb	99	58.088	ENSGALG00000009677	SSB	99	56.863	Gallus_gallus
ENSSDUG00000020117	ssb	100	83.623	ENSGAFG00000002749	ssb	100	84.119	Gambusia_affinis
ENSSDUG00000020117	ssb	100	82.673	ENSGACG00000005107	ssb	100	82.673	Gasterosteus_aculeatus
ENSSDUG00000020117	ssb	100	60.244	ENSGAGG00000007807	SSB	99	60.244	Gopherus_agassizii
ENSSDUG00000020117	ssb	54	53.812	ENSGGOG00000023471	-	90	53.363	Gorilla_gorilla
ENSSDUG00000020117	ssb	100	48.768	ENSGGOG00000024891	-	99	48.276	Gorilla_gorilla
ENSSDUG00000020117	ssb	100	80.952	ENSHBUG00000006584	ssb	100	80.702	Haplochromis_burtoni
ENSSDUG00000020117	ssb	100	57.767	ENSHGLG00000017580	-	99	57.421	Heterocephalus_glaber_female
ENSSDUG00000020117	ssb	100	52.334	ENSHGLG00000004478	-	99	52.088	Heterocephalus_glaber_female
ENSSDUG00000020117	ssb	100	51.870	ENSHGLG00000005832	-	99	51.621	Heterocephalus_glaber_female
ENSSDUG00000020117	ssb	100	57.767	ENSHGLG00100003084	-	99	57.421	Heterocephalus_glaber_male
ENSSDUG00000020117	ssb	100	53.102	ENSHGLG00100008767	-	99	52.605	Heterocephalus_glaber_male
ENSSDUG00000020117	ssb	99	79.849	ENSHCOG00000019011	ssb	99	79.545	Hippocampus_comes
ENSSDUG00000020117	ssb	100	65.207	ENSIPUG00000003681	SSB	100	63.747	Ictalurus_punctatus
ENSSDUG00000020117	ssb	100	57.143	ENSSTOG00000008416	SSB	99	56.404	Ictidomys_tridecemlineatus
ENSSDUG00000020117	ssb	89	46.648	ENSJJAG00000016250	-	94	46.369	Jaculus_jaculus
ENSSDUG00000020117	ssb	100	52.267	ENSJJAG00000023158	-	99	51.914	Jaculus_jaculus
ENSSDUG00000020117	ssb	100	87.688	ENSKMAG00000017317	ssb	100	87.688	Kryptolebias_marmoratus
ENSSDUG00000020117	ssb	100	88.191	ENSLBEG00000017345	ssb	100	88.191	Labrus_bergylta
ENSSDUG00000020117	ssb	100	55.257	ENSLACG00000014056	SSB	99	55.746	Latimeria_chalumnae
ENSSDUG00000020117	ssb	100	66.585	ENSLOCG00000007933	ssb	99	66.585	Lepisosteus_oculatus
ENSSDUG00000020117	ssb	75	43.624	ENSLAFG00000026721	-	98	43.624	Loxodonta_africana
ENSSDUG00000020117	ssb	100	54.157	ENSLAFG00000000867	-	99	53.919	Loxodonta_africana
ENSSDUG00000020117	ssb	100	50.617	ENSLAFG00000028909	-	99	49.877	Loxodonta_africana
ENSSDUG00000020117	ssb	90	49.307	ENSMFAG00000041478	-	91	51.976	Macaca_fascicularis
ENSSDUG00000020117	ssb	100	57.143	ENSMFAG00000039066	SSB	99	56.897	Macaca_fascicularis
ENSSDUG00000020117	ssb	100	57.143	ENSMMUG00000023051	SSB	99	56.897	Macaca_mulatta
ENSSDUG00000020117	ssb	99	42.643	ENSMMUG00000039889	-	98	42.643	Macaca_mulatta
ENSSDUG00000020117	ssb	100	48.522	ENSMMUG00000011724	-	97	48.522	Macaca_mulatta
ENSSDUG00000020117	ssb	100	48.780	ENSMNEG00000028321	SSB	85	66.087	Macaca_nemestrina
ENSSDUG00000020117	ssb	90	49.307	ENSMNEG00000034698	-	91	51.976	Macaca_nemestrina
ENSSDUG00000020117	ssb	100	57.143	ENSMLEG00000035717	SSB	99	56.897	Mandrillus_leucophaeus
ENSSDUG00000020117	ssb	100	40.247	ENSMLEG00000042644	-	99	39.753	Mandrillus_leucophaeus
ENSSDUG00000020117	ssb	100	90.201	ENSMAMG00000004800	ssb	100	90.201	Mastacembelus_armatus
ENSSDUG00000020117	ssb	100	80.952	ENSMZEG00005005749	ssb	100	80.702	Maylandia_zebra
ENSSDUG00000020117	ssb	99	57.843	ENSMGAG00000010328	SSB	100	62.319	Meleagris_gallopavo
ENSSDUG00000020117	ssb	100	57.635	ENSMICG00000028252	-	99	57.389	Microcebus_murinus
ENSSDUG00000020117	ssb	98	52.152	ENSMICG00000033304	-	94	54.155	Microcebus_murinus
ENSSDUG00000020117	ssb	100	55.610	ENSMODG00000008227	-	99	55.610	Monodelphis_domestica
ENSSDUG00000020117	ssb	100	48.395	ENSMODG00000019271	-	99	48.148	Monodelphis_domestica
ENSSDUG00000020117	ssb	100	37.438	ENSMODG00000007027	-	99	45.567	Monodelphis_domestica
ENSSDUG00000020117	ssb	92	83.106	ENSMALG00000008045	ssb	89	85.445	Monopterus_albus
ENSSDUG00000020117	ssb	100	53.253	MGP_CAROLIEiJ_G0023629	-	98	62.420	Mus_caroli
ENSSDUG00000020117	ssb	100	53.253	ENSMUSG00000068882	Ssb	98	62.420	Mus_musculus
ENSSDUG00000020117	ssb	100	53.012	MGP_PahariEiJ_G0025081	-	98	61.783	Mus_pahari
ENSSDUG00000020117	ssb	100	53.253	MGP_SPRETEiJ_G0024551	Ssb	98	62.420	Mus_spretus
ENSSDUG00000020117	ssb	100	57.882	ENSMPUG00000000785	SSB	99	57.635	Mustela_putorius_furo
ENSSDUG00000020117	ssb	100	56.867	ENSMLUG00000016316	SSB	99	56.627	Myotis_lucifugus
ENSSDUG00000020117	ssb	100	80.750	ENSNBRG00000012661	ssb	100	80.500	Neolamprologus_brichardi
ENSSDUG00000020117	ssb	100	56.897	ENSNLEG00000004958	SSB	99	56.650	Nomascus_leucogenys
ENSSDUG00000020117	ssb	84	46.291	ENSNLEG00000028754	-	78	47.112	Nomascus_leucogenys
ENSSDUG00000020117	ssb	63	62.400	ENSMEUG00000001650	-	100	62.400	Notamacropus_eugenii
ENSSDUG00000020117	ssb	51	57.325	ENSOPRG00000008475	-	54	57.325	Ochotona_princeps
ENSSDUG00000020117	ssb	93	56.836	ENSODEG00000004202	-	99	56.568	Octodon_degus
ENSSDUG00000020117	ssb	100	82.500	ENSONIG00000008776	ssb	100	82.250	Oreochromis_niloticus
ENSSDUG00000020117	ssb	100	56.650	ENSOANG00000008543	SSB	99	56.650	Ornithorhynchus_anatinus
ENSSDUG00000020117	ssb	100	56.897	ENSOCUG00000010396	SSB	99	56.650	Oryctolagus_cuniculus
ENSSDUG00000020117	ssb	100	83.250	ENSORLG00000017208	ssb	100	83.250	Oryzias_latipes
ENSSDUG00000020117	ssb	100	82.793	ENSORLG00020022574	ssb	100	83.292	Oryzias_latipes_hni
ENSSDUG00000020117	ssb	100	83.750	ENSORLG00015016592	ssb	100	83.750	Oryzias_latipes_hsok
ENSSDUG00000020117	ssb	100	85.536	ENSOMEG00000003193	ssb	100	85.786	Oryzias_melastigma
ENSSDUG00000020117	ssb	100	53.919	ENSOGAG00000029768	SSB	99	53.682	Otolemur_garnettii
ENSSDUG00000020117	ssb	100	57.389	ENSOARG00000002906	SSB	99	57.143	Ovis_aries
ENSSDUG00000020117	ssb	100	48.522	ENSPPAG00000032427	-	100	58.140	Pan_paniscus
ENSSDUG00000020117	ssb	91	47.956	ENSPPAG00000006189	-	92	46.594	Pan_paniscus
ENSSDUG00000020117	ssb	100	56.479	ENSPPAG00000042673	SSB	99	56.235	Pan_paniscus
ENSSDUG00000020117	ssb	100	57.985	ENSPPRG00000006599	SSB	99	57.740	Panthera_pardus
ENSSDUG00000020117	ssb	100	57.985	ENSPTIG00000011021	SSB	97	57.740	Panthera_tigris_altaica
ENSSDUG00000020117	ssb	100	56.479	ENSPTRG00000012620	SSB	99	56.235	Pan_troglodytes
ENSSDUG00000020117	ssb	100	46.059	ENSPTRG00000042880	-	99	45.813	Pan_troglodytes
ENSSDUG00000020117	ssb	100	57.143	ENSPANG00000007440	SSB	99	56.897	Papio_anubis
ENSSDUG00000020117	ssb	99	42.145	ENSPANG00000034126	-	77	45.679	Papio_anubis
ENSSDUG00000020117	ssb	96	39.589	ENSPANG00000031877	-	91	39.332	Papio_anubis
ENSSDUG00000020117	ssb	100	72.886	ENSPKIG00000019325	ssb	99	72.886	Paramormyrops_kingsleyae
ENSSDUG00000020117	ssb	100	58.537	ENSPSIG00000002265	SSB	93	59.268	Pelodiscus_sinensis
ENSSDUG00000020117	ssb	88	76.000	ENSPMGG00000020075	ssb	91	76.000	Periophthalmus_magnuspinnatus
ENSSDUG00000020117	ssb	95	45.312	ENSPMAG00000002982	ssb	89	44.845	Petromyzon_marinus
ENSSDUG00000020117	ssb	99	57.538	ENSPCIG00000028591	-	99	58.128	Phascolarctos_cinereus
ENSSDUG00000020117	ssb	100	85.250	ENSPFOG00000009650	ssb	100	85.250	Poecilia_formosa
ENSSDUG00000020117	ssb	100	84.750	ENSPLAG00000020498	ssb	100	85.250	Poecilia_latipinna
ENSSDUG00000020117	ssb	100	85.000	ENSPMEG00000001051	ssb	100	85.000	Poecilia_mexicana
ENSSDUG00000020117	ssb	93	85.484	ENSPREG00000003708	ssb	98	85.255	Poecilia_reticulata
ENSSDUG00000020117	ssb	100	56.897	ENSPPYG00000012919	SSB	99	56.650	Pongo_abelii
ENSSDUG00000020117	ssb	95	55.469	ENSPCAG00000010276	SSB	99	55.469	Procavia_capensis
ENSSDUG00000020117	ssb	100	55.419	ENSPCOG00000015741	-	92	63.793	Propithecus_coquereli
ENSSDUG00000020117	ssb	100	51.724	ENSPCOG00000023189	-	99	51.478	Propithecus_coquereli
ENSSDUG00000020117	ssb	88	59.829	ENSPVAG00000006615	SSB	99	58.824	Pteropus_vampyrus
ENSSDUG00000020117	ssb	100	80.952	ENSPNYG00000006444	ssb	100	80.702	Pundamilia_nyererei
ENSSDUG00000020117	ssb	100	63.659	ENSPNAG00000011708	ssb	100	61.951	Pygocentrus_nattereri
ENSSDUG00000020117	ssb	100	52.985	ENSRNOG00000011606	AABR07061825.1	99	52.736	Rattus_norvegicus
ENSSDUG00000020117	ssb	100	52.289	ENSRNOG00000007998	Ssb	99	51.807	Rattus_norvegicus
ENSSDUG00000020117	ssb	99	42.040	ENSRBIG00000029918	-	98	41.791	Rhinopithecus_bieti
ENSSDUG00000020117	ssb	100	50.244	ENSRBIG00000041972	SSB	88	66.087	Rhinopithecus_bieti
ENSSDUG00000020117	ssb	94	48.021	ENSRBIG00000041232	-	98	47.757	Rhinopithecus_bieti
ENSSDUG00000020117	ssb	86	53.143	ENSRBIG00000041608	-	94	51.429	Rhinopithecus_bieti
ENSSDUG00000020117	ssb	100	57.143	ENSRROG00000040346	SSB	99	56.897	Rhinopithecus_roxellana
ENSSDUG00000020117	ssb	98	48.232	ENSRROG00000031684	-	99	47.980	Rhinopithecus_roxellana
ENSSDUG00000020117	ssb	86	55.429	ENSRROG00000034102	-	96	50.882	Rhinopithecus_roxellana
ENSSDUG00000020117	ssb	99	46.517	ENSRROG00000007149	-	98	46.269	Rhinopithecus_roxellana
ENSSDUG00000020117	ssb	100	56.897	ENSSBOG00000027204	SSB	99	56.897	Saimiri_boliviensis_boliviensis
ENSSDUG00000020117	ssb	100	57.882	ENSSHAG00000018062	SSB	99	58.128	Sarcophilus_harrisii
ENSSDUG00000020117	ssb	100	70.936	ENSSFOG00015000550	ssb	99	70.936	Scleropages_formosus
ENSSDUG00000020117	ssb	100	85.930	ENSSMAG00000013885	ssb	99	90.080	Scophthalmus_maximus
ENSSDUG00000020117	ssb	100	94.472	ENSSLDG00000002525	ssb	100	94.472	Seriola_lalandi_dorsalis
ENSSDUG00000020117	ssb	95	52.865	ENSSARG00000007747	SSB	99	52.604	Sorex_araneus
ENSSDUG00000020117	ssb	100	60.294	ENSSPUG00000012112	SSB	99	60.539	Sphenodon_punctatus
ENSSDUG00000020117	ssb	100	88.945	ENSSPAG00000005696	ssb	100	88.945	Stegastes_partitus
ENSSDUG00000020117	ssb	94	54.642	ENSSSCG00000015938	SSB	93	53.581	Sus_scrofa
ENSSDUG00000020117	ssb	95	58.247	ENSTGUG00000007942	SSB	99	57.457	Taeniopygia_guttata
ENSSDUG00000020117	ssb	100	84.422	ENSTRUG00000017839	ssb	100	84.422	Takifugu_rubripes
ENSSDUG00000020117	ssb	92	80.759	ENSTNIG00000000915	ssb	100	79.292	Tetraodon_nigroviridis
ENSSDUG00000020117	ssb	82	66.087	ENSTBEG00000009056	SSB	81	66.087	Tupaia_belangeri
ENSSDUG00000020117	ssb	100	57.740	ENSTTRG00000002152	SSB	99	57.494	Tursiops_truncatus
ENSSDUG00000020117	ssb	94	58.311	ENSUAMG00000027833	SSB	99	58.047	Ursus_americanus
ENSSDUG00000020117	ssb	100	57.002	ENSUMAG00000013907	SSB	99	56.757	Ursus_maritimus
ENSSDUG00000020117	ssb	100	57.816	ENSVPAG00000007183	SSB	99	57.568	Vicugna_pacos
ENSSDUG00000020117	ssb	100	56.757	ENSVVUG00000016573	SSB	77	56.511	Vulpes_vulpes
ENSSDUG00000020117	ssb	99	52.804	ENSXETG00000025402	ssb	99	52.336	Xenopus_tropicalis
ENSSDUG00000020117	ssb	93	80.645	ENSXCOG00000019109	ssb	97	80.645	Xiphophorus_couchianus
ENSSDUG00000020117	ssb	100	83.375	ENSXMAG00000004888	ssb	100	83.375	Xiphophorus_maculatus