EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000020426 (Gene tree)
Gene ID: 111219989
Gene Symbol: cstf3
Alias: cleavage stimulation factor|3 pre-RNA|subunit 3|wu:fa99c02|wu:fb18b09|zgc:56028
Full Name: cleavage stimulation factor subunit 3
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 12762 bases
Position: chrBDQW01000003.1:2918396-2931157
Accession: 111219989
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000028307	Suf	PF05843.14	1.6e-84	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000028798	-	3971	XM_022742901	ENSSDUP00000028307	716 (aa)	XP_022598622	UPI000BBE46FF

Gene Model

Click here to download ENSSDUG00000020426's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000020426's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000020426	cstf3	100	91.086	ENSG00000176102	CSTF3	100	91.086	Homo_sapiens
ENSSDUG00000020426	cstf3	100	99.302	ENSAPOG00000014054	cstf3	100	99.302	Acanthochromis_polyacanthus
ENSSDUG00000020426	cstf3	99	91.667	ENSAMEG00000007187	CSTF3	98	91.667	Ailuropoda_melanoleuca
ENSSDUG00000020426	cstf3	87	93.900	ENSACIG00000005539	cstf3	100	93.900	Amphilophus_citrinellus
ENSSDUG00000020426	cstf3	100	99.302	ENSAOCG00000010930	cstf3	100	99.302	Amphiprion_ocellaris
ENSSDUG00000020426	cstf3	100	99.302	ENSAPEG00000007903	cstf3	100	99.302	Amphiprion_percula
ENSSDUG00000020426	cstf3	100	99.302	ENSATEG00000000190	cstf3	100	99.302	Anabas_testudineus
ENSSDUG00000020426	cstf3	99	91.949	ENSAPLG00000007217	CSTF3	100	91.949	Anas_platyrhynchos
ENSSDUG00000020426	cstf3	100	91.783	ENSACAG00000002823	CSTF3	100	91.783	Anolis_carolinensis
ENSSDUG00000020426	cstf3	100	91.086	ENSANAG00000020699	CSTF3	100	91.200	Aotus_nancymaae
ENSSDUG00000020426	cstf3	100	98.464	ENSACLG00000007820	cstf3	100	98.464	Astatotilapia_calliptera
ENSSDUG00000020426	cstf3	100	92.758	ENSAMXG00000014198	cstf3	100	93.036	Astyanax_mexicanus
ENSSDUG00000020426	cstf3	100	91.086	ENSBTAG00000008617	CSTF3	100	91.543	Bos_taurus
ENSSDUG00000020426	cstf3	97	47.574	WBGene00006307	suf-1	99	47.574	Caenorhabditis_elegans
ENSSDUG00000020426	cstf3	100	91.086	ENSCJAG00000005533	CSTF3	100	91.200	Callithrix_jacchus
ENSSDUG00000020426	cstf3	100	91.086	ENSCAFG00000007264	CSTF3	100	91.086	Canis_familiaris
ENSSDUG00000020426	cstf3	99	91.808	ENSCAFG00020002715	CSTF3	98	91.808	Canis_lupus_dingo
ENSSDUG00000020426	cstf3	98	90.327	ENSCHIG00000016418	CSTF3	100	91.200	Capra_hircus
ENSSDUG00000020426	cstf3	99	92.090	ENSTSYG00000000451	CSTF3	99	96.659	Carlito_syrichta
ENSSDUG00000020426	cstf3	83	88.626	ENSCAPG00000010958	CSTF3	98	88.626	Cavia_aperea
ENSSDUG00000020426	cstf3	100	91.226	ENSCPOG00000005545	CSTF3	100	91.226	Cavia_porcellus
ENSSDUG00000020426	cstf3	100	91.086	ENSCCAG00000024790	CSTF3	96	96.659	Cebus_capucinus
ENSSDUG00000020426	cstf3	100	91.086	ENSCATG00000007080	CSTF3	100	91.200	Cercocebus_atys
ENSSDUG00000020426	cstf3	100	91.086	ENSCLAG00000016179	CSTF3	100	91.086	Chinchilla_lanigera
ENSSDUG00000020426	cstf3	78	97.368	ENSCHOG00000002497	CSTF3	79	97.368	Choloepus_hoffmanni
ENSSDUG00000020426	cstf3	100	91.365	ENSCPBG00000006753	CSTF3	100	91.365	Chrysemys_picta_bellii
ENSSDUG00000020426	cstf3	99	61.720	ENSCING00000006401	-	99	61.720	Ciona_intestinalis
ENSSDUG00000020426	cstf3	98	61.259	ENSCSAVG00000004851	-	100	61.259	Ciona_savignyi
ENSSDUG00000020426	cstf3	100	91.086	ENSCANG00000035468	CSTF3	100	91.200	Colobus_angolensis_palliatus
ENSSDUG00000020426	cstf3	100	90.947	ENSCGRG00001014773	Cstf3	100	90.947	Cricetulus_griseus_chok1gshd
ENSSDUG00000020426	cstf3	100	90.947	ENSCGRG00000004142	Cstf3	100	90.947	Cricetulus_griseus_crigri
ENSSDUG00000020426	cstf3	100	97.486	ENSCSEG00000014283	cstf3	100	97.486	Cynoglossus_semilaevis
ENSSDUG00000020426	cstf3	100	96.788	ENSCVAG00000019739	cstf3	100	96.788	Cyprinodon_variegatus
ENSSDUG00000020426	cstf3	100	94.700	ENSDARG00000018904	cstf3	100	94.700	Danio_rerio
ENSSDUG00000020426	cstf3	99	91.608	ENSDNOG00000007366	CSTF3	99	91.608	Dasypus_novemcinctus
ENSSDUG00000020426	cstf3	99	84.203	ENSDORG00000005898	Cstf3	99	84.203	Dipodomys_ordii
ENSSDUG00000020426	cstf3	99	55.391	FBgn0003559	su(f)	99	55.391	Drosophila_melanogaster
ENSSDUG00000020426	cstf3	89	85.981	ENSETEG00000017097	CSTF3	90	85.981	Echinops_telfairi
ENSSDUG00000020426	cstf3	84	74.627	ENSEBUG00000015459	cstf3	96	74.627	Eptatretus_burgeri
ENSSDUG00000020426	cstf3	99	90.395	ENSEASG00005019884	CSTF3	96	96.659	Equus_asinus_asinus
ENSSDUG00000020426	cstf3	99	90.395	ENSECAG00000023338	CSTF3	96	96.659	Equus_caballus
ENSSDUG00000020426	cstf3	100	86.351	ENSEEUG00000015167	CSTF3	100	86.351	Erinaceus_europaeus
ENSSDUG00000020426	cstf3	100	95.258	ENSELUG00000023393	cstf3	100	95.258	Esox_lucius
ENSSDUG00000020426	cstf3	100	91.226	ENSFCAG00000030711	CSTF3	100	91.226	Felis_catus
ENSSDUG00000020426	cstf3	92	93.816	ENSFALG00000010764	CSTF3	100	90.783	Ficedula_albicollis
ENSSDUG00000020426	cstf3	100	91.226	ENSFDAG00000012082	CSTF3	100	91.226	Fukomys_damarensis
ENSSDUG00000020426	cstf3	100	96.927	ENSFHEG00000020623	cstf3	100	96.927	Fundulus_heteroclitus
ENSSDUG00000020426	cstf3	100	94.847	ENSGMOG00000012275	cstf3	100	94.847	Gadus_morhua
ENSSDUG00000020426	cstf3	100	91.086	ENSGALG00000011685	CSTF3	100	91.086	Gallus_gallus
ENSSDUG00000020426	cstf3	100	96.927	ENSGAFG00000002181	cstf3	100	96.927	Gambusia_affinis
ENSSDUG00000020426	cstf3	100	97.905	ENSGACG00000015997	cstf3	100	97.905	Gasterosteus_aculeatus
ENSSDUG00000020426	cstf3	100	91.365	ENSGAGG00000006200	CSTF3	100	91.365	Gopherus_agassizii
ENSSDUG00000020426	cstf3	99	86.017	ENSGGOG00000026591	CSTF3	96	91.759	Gorilla_gorilla
ENSSDUG00000020426	cstf3	100	98.324	ENSHBUG00000016656	cstf3	100	98.324	Haplochromis_burtoni
ENSSDUG00000020426	cstf3	100	91.086	ENSHGLG00000017834	CSTF3	100	91.086	Heterocephalus_glaber_female
ENSSDUG00000020426	cstf3	100	91.086	ENSHGLG00100018042	CSTF3	100	91.086	Heterocephalus_glaber_male
ENSSDUG00000020426	cstf3	100	93.715	ENSHCOG00000015218	cstf3	100	93.715	Hippocampus_comes
ENSSDUG00000020426	cstf3	100	93.445	ENSIPUG00000013170	CSTF3	100	93.445	Ictalurus_punctatus
ENSSDUG00000020426	cstf3	100	91.086	ENSSTOG00000013306	CSTF3	100	91.086	Ictidomys_tridecemlineatus
ENSSDUG00000020426	cstf3	99	81.638	ENSJJAG00000018430	Cstf3	98	81.638	Jaculus_jaculus
ENSSDUG00000020426	cstf3	100	96.089	ENSKMAG00000010916	cstf3	100	96.089	Kryptolebias_marmoratus
ENSSDUG00000020426	cstf3	100	97.765	ENSLBEG00000002306	cstf3	100	97.765	Labrus_bergylta
ENSSDUG00000020426	cstf3	100	90.377	ENSLACG00000017296	CSTF3	100	90.377	Latimeria_chalumnae
ENSSDUG00000020426	cstf3	100	94.429	ENSLOCG00000004415	cstf3	100	94.429	Lepisosteus_oculatus
ENSSDUG00000020426	cstf3	100	91.086	ENSLAFG00000008712	CSTF3	100	91.086	Loxodonta_africana
ENSSDUG00000020426	cstf3	100	91.086	ENSMFAG00000029516	CSTF3	100	91.200	Macaca_fascicularis
ENSSDUG00000020426	cstf3	100	91.086	ENSMMUG00000002542	CSTF3	100	91.086	Macaca_mulatta
ENSSDUG00000020426	cstf3	100	91.086	ENSMNEG00000021807	CSTF3	100	91.200	Macaca_nemestrina
ENSSDUG00000020426	cstf3	100	91.086	ENSMLEG00000039594	CSTF3	97	94.432	Mandrillus_leucophaeus
ENSSDUG00000020426	cstf3	100	99.162	ENSMAMG00000020423	cstf3	100	99.162	Mastacembelus_armatus
ENSSDUG00000020426	cstf3	100	98.464	ENSMZEG00005012082	cstf3	100	98.464	Maylandia_zebra
ENSSDUG00000020426	cstf3	100	90.947	ENSMGAG00000001383	CSTF3	100	90.947	Meleagris_gallopavo
ENSSDUG00000020426	cstf3	100	90.808	ENSMAUG00000002487	Cstf3	100	90.808	Mesocricetus_auratus
ENSSDUG00000020426	cstf3	100	91.086	ENSMICG00000004784	CSTF3	100	91.200	Microcebus_murinus
ENSSDUG00000020426	cstf3	100	90.947	ENSMOCG00000017583	Cstf3	100	90.947	Microtus_ochrogaster
ENSSDUG00000020426	cstf3	99	98.588	ENSMMOG00000016026	cstf3	95	98.588	Mola_mola
ENSSDUG00000020426	cstf3	99	80.758	ENSMODG00000025205	-	99	80.758	Monodelphis_domestica
ENSSDUG00000020426	cstf3	100	91.504	ENSMODG00000009745	-	100	91.504	Monodelphis_domestica
ENSSDUG00000020426	cstf3	100	99.022	ENSMALG00000012050	cstf3	100	99.022	Monopterus_albus
ENSSDUG00000020426	cstf3	100	90.947	MGP_CAROLIEiJ_G0024026	Cstf3	100	90.947	Mus_caroli
ENSSDUG00000020426	cstf3	100	90.947	ENSMUSG00000027176	Cstf3	100	90.947	Mus_musculus
ENSSDUG00000020426	cstf3	100	90.947	MGP_PahariEiJ_G0025464	Cstf3	100	90.947	Mus_pahari
ENSSDUG00000020426	cstf3	100	90.947	MGP_SPRETEiJ_G0024939	Cstf3	100	90.947	Mus_spretus
ENSSDUG00000020426	cstf3	100	90.947	ENSMPUG00000011457	CSTF3	100	90.947	Mustela_putorius_furo
ENSSDUG00000020426	cstf3	100	88.440	ENSMLUG00000026022	-	100	88.440	Myotis_lucifugus
ENSSDUG00000020426	cstf3	99	91.808	ENSMLUG00000003073	-	99	91.808	Myotis_lucifugus
ENSSDUG00000020426	cstf3	100	90.947	ENSNGAG00000010677	Cstf3	100	90.947	Nannospalax_galili
ENSSDUG00000020426	cstf3	87	98.876	ENSNBRG00000007345	cstf3	100	98.876	Neolamprologus_brichardi
ENSSDUG00000020426	cstf3	100	91.086	ENSNLEG00000017901	CSTF3	97	94.209	Nomascus_leucogenys
ENSSDUG00000020426	cstf3	73	90.631	ENSMEUG00000005640	-	100	90.631	Notamacropus_eugenii
ENSSDUG00000020426	cstf3	67	88.158	ENSOPRG00000000199	-	67	88.158	Ochotona_princeps
ENSSDUG00000020426	cstf3	89	79.403	ENSODEG00000006311	-	97	79.403	Octodon_degus
ENSSDUG00000020426	cstf3	100	91.086	ENSODEG00000016737	-	100	91.086	Octodon_degus
ENSSDUG00000020426	cstf3	100	98.464	ENSONIG00000005563	cstf3	100	98.464	Oreochromis_niloticus
ENSSDUG00000020426	cstf3	90	90.615	ENSOANG00000015140	CSTF3	100	90.615	Ornithorhynchus_anatinus
ENSSDUG00000020426	cstf3	100	90.808	ENSOCUG00000015417	CSTF3	100	90.808	Oryctolagus_cuniculus
ENSSDUG00000020426	cstf3	100	96.229	ENSORLG00000009762	cstf3	100	96.229	Oryzias_latipes
ENSSDUG00000020426	cstf3	100	96.229	ENSORLG00020005540	cstf3	100	96.229	Oryzias_latipes_hni
ENSSDUG00000020426	cstf3	100	96.089	ENSORLG00015003551	cstf3	100	96.089	Oryzias_latipes_hsok
ENSSDUG00000020426	cstf3	100	96.648	ENSOMEG00000003848	cstf3	100	96.648	Oryzias_melastigma
ENSSDUG00000020426	cstf3	100	90.707	ENSOGAG00000010229	CSTF3	100	90.707	Otolemur_garnettii
ENSSDUG00000020426	cstf3	90	91.291	ENSOARG00000017271	CSTF3	99	91.291	Ovis_aries
ENSSDUG00000020426	cstf3	99	88.418	ENSPPAG00000027358	CSTF3	99	88.418	Pan_paniscus
ENSSDUG00000020426	cstf3	100	91.226	ENSPPRG00000016852	CSTF3	100	91.226	Panthera_pardus
ENSSDUG00000020426	cstf3	100	91.226	ENSPTIG00000008716	CSTF3	100	91.226	Panthera_tigris_altaica
ENSSDUG00000020426	cstf3	100	91.086	ENSPTRG00000003485	CSTF3	100	91.086	Pan_troglodytes
ENSSDUG00000020426	cstf3	100	91.086	ENSPANG00000013722	CSTF3	97	94.432	Papio_anubis
ENSSDUG00000020426	cstf3	100	94.003	ENSPKIG00000023648	cstf3	100	94.003	Paramormyrops_kingsleyae
ENSSDUG00000020426	cstf3	100	91.365	ENSPSIG00000009173	CSTF3	100	91.365	Pelodiscus_sinensis
ENSSDUG00000020426	cstf3	77	98.358	ENSPMGG00000000164	cstf3	99	98.358	Periophthalmus_magnuspinnatus
ENSSDUG00000020426	cstf3	100	90.947	ENSPEMG00000011481	Cstf3	100	90.947	Peromyscus_maniculatus_bairdii
ENSSDUG00000020426	cstf3	99	79.155	ENSPMAG00000007282	cstf3	100	78.750	Petromyzon_marinus
ENSSDUG00000020426	cstf3	100	89.152	ENSPCIG00000026406	-	100	91.680	Phascolarctos_cinereus
ENSSDUG00000020426	cstf3	99	76.999	ENSPCIG00000030419	-	89	77.279	Phascolarctos_cinereus
ENSSDUG00000020426	cstf3	100	97.207	ENSPFOG00000017239	cstf3	100	97.207	Poecilia_formosa
ENSSDUG00000020426	cstf3	100	97.346	ENSPLAG00000009456	cstf3	100	97.346	Poecilia_latipinna
ENSSDUG00000020426	cstf3	100	97.207	ENSPMEG00000010320	cstf3	100	97.207	Poecilia_mexicana
ENSSDUG00000020426	cstf3	100	97.067	ENSPREG00000013549	cstf3	100	97.067	Poecilia_reticulata
ENSSDUG00000020426	cstf3	100	91.086	ENSPPYG00000003375	CSTF3	100	91.086	Pongo_abelii
ENSSDUG00000020426	cstf3	71	95.819	ENSPCAG00000008025	-	71	95.819	Procavia_capensis
ENSSDUG00000020426	cstf3	100	86.072	ENSPCOG00000014417	CSTF3	100	86.072	Propithecus_coquereli
ENSSDUG00000020426	cstf3	100	85.933	ENSPVAG00000002350	CSTF3	100	85.933	Pteropus_vampyrus
ENSSDUG00000020426	cstf3	100	98.324	ENSPNYG00000018259	cstf3	100	98.324	Pundamilia_nyererei
ENSSDUG00000020426	cstf3	100	95.258	ENSPNAG00000020182	cstf3	100	95.258	Pygocentrus_nattereri
ENSSDUG00000020426	cstf3	87	90.720	ENSRNOG00000012089	Cstf3	100	90.720	Rattus_norvegicus
ENSSDUG00000020426	cstf3	99	90.395	ENSRBIG00000044258	CSTF3	100	91.200	Rhinopithecus_bieti
ENSSDUG00000020426	cstf3	100	91.086	ENSRROG00000043450	CSTF3	100	91.200	Rhinopithecus_roxellana
ENSSDUG00000020426	cstf3	100	91.086	ENSSBOG00000024764	CSTF3	98	96.659	Saimiri_boliviensis_boliviensis
ENSSDUG00000020426	cstf3	99	92.090	ENSSHAG00000018128	-	99	92.090	Sarcophilus_harrisii
ENSSDUG00000020426	cstf3	100	81.476	ENSSHAG00000003135	-	99	81.476	Sarcophilus_harrisii
ENSSDUG00000020426	cstf3	100	94.282	ENSSFOG00015022133	cstf3	100	94.282	Scleropages_formosus
ENSSDUG00000020426	cstf3	100	98.464	ENSSMAG00000002197	cstf3	100	98.464	Scophthalmus_maximus
ENSSDUG00000020426	cstf3	100	99.721	ENSSLDG00000025649	cstf3	100	99.721	Seriola_lalandi_dorsalis
ENSSDUG00000020426	cstf3	100	90.808	ENSSARG00000000391	CSTF3	100	90.808	Sorex_araneus
ENSSDUG00000020426	cstf3	96	91.606	ENSSPUG00000010546	CSTF3	100	91.606	Sphenodon_punctatus
ENSSDUG00000020426	cstf3	100	99.162	ENSSPAG00000004958	cstf3	100	99.162	Stegastes_partitus
ENSSDUG00000020426	cstf3	99	91.024	ENSSSCG00000040954	CSTF3	99	91.024	Sus_scrofa
ENSSDUG00000020426	cstf3	99	91.667	ENSTGUG00000005010	CSTF3	100	91.667	Taeniopygia_guttata
ENSSDUG00000020426	cstf3	100	96.508	ENSTRUG00000004959	cstf3	100	96.508	Takifugu_rubripes
ENSSDUG00000020426	cstf3	99	97.458	ENSTNIG00000013811	cstf3	99	97.458	Tetraodon_nigroviridis
ENSSDUG00000020426	cstf3	89	88.629	ENSTBEG00000001544	CSTF3	90	88.629	Tupaia_belangeri
ENSSDUG00000020426	cstf3	100	88.301	ENSTTRG00000016366	CSTF3	100	88.301	Tursiops_truncatus
ENSSDUG00000020426	cstf3	99	91.525	ENSUMAG00000018971	CSTF3	100	90.880	Ursus_maritimus
ENSSDUG00000020426	cstf3	100	90.947	ENSVPAG00000007800	CSTF3	100	90.947	Vicugna_pacos
ENSSDUG00000020426	cstf3	99	91.808	ENSVVUG00000014938	CSTF3	100	91.200	Vulpes_vulpes
ENSSDUG00000020426	cstf3	66	42.324	ENSXETG00000017946	-	99	42.324	Xenopus_tropicalis
ENSSDUG00000020426	cstf3	88	75.781	ENSXETG00000021399	cstf3	100	76.861	Xenopus_tropicalis
ENSSDUG00000020426	cstf3	87	96.790	ENSXCOG00000011741	cstf3	100	96.790	Xiphophorus_couchianus
ENSSDUG00000020426	cstf3	100	97.067	ENSXMAG00000009545	cstf3	100	97.067	Xiphophorus_maculatus