EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000020582 (Gene tree)
Gene ID
111239286
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
12776 bases
Position
chrBDQW01002262.1:822365-835140
Accession
111239286
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000028508RRM_1PF00076.223.5e-1711
ENSSDUP00000028494RRM_1PF00076.223.7e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000028987-2054XM_022769126ENSSDUP00000028494292 (aa)XP_022624847-
ENSSDUT00000029001-2030XM_022769124ENSSDUP00000028508284 (aa)XP_022624845UPI000873D968
Gene Model
Click here to download ENSSDUG00000020582's gene model file
Pathways
Pathway IDPathway NameSource
sdu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000020582's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000020582pabpn15260.784ENSSDUG00000006986PABPN1L7554.762
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000020582pabpn16781.773ENSG00000100836PABPN19282.051Homo_sapiens
ENSSDUG00000020582pabpn17771.739ENSG00000258643BCL2L2-PABPN16671.946Homo_sapiens
ENSSDUG00000020582pabpn110099.296ENSAPOG00000016425pabpn110099.296Acanthochromis_polyacanthus
ENSSDUG00000020582pabpn16383.422ENSAMEG00000007048BCL2L2-PABPN19484.270Ailuropoda_melanoleuca
ENSSDUG00000020582pabpn110097.203ENSACIG00000021744pabpn110097.203Amphilophus_citrinellus
ENSSDUG00000020582pabpn17899.127ENSAOCG00000015805pabpn19999.127Amphiprion_ocellaris
ENSSDUG00000020582pabpn17899.127ENSAPEG00000009623pabpn19999.127Amphiprion_percula
ENSSDUG00000020582pabpn17899.563ENSATEG00000020531pabpn19999.563Anabas_testudineus
ENSSDUG00000020582pabpn16385.027ENSACAG00000006185-8072.152Anolis_carolinensis
ENSSDUG00000020582pabpn16683.077ENSANAG00000024513-8075.652Aotus_nancymaae
ENSSDUG00000020582pabpn110096.864ENSACLG00000016374pabpn110096.864Astatotilapia_calliptera
ENSSDUG00000020582pabpn110087.018ENSAMXG00000000452pabpn19996.957Astyanax_mexicanus
ENSSDUG00000020582pabpn16084.483ENSBTAG00000050594-7679.798Bos_taurus
ENSSDUG00000020582pabpn16482.011ENSBTAG00000053753-6782.778Bos_taurus
ENSSDUG00000020582pabpn16683.077ENSBTAG00000006884PABPN18469.048Bos_taurus
ENSSDUG00000020582pabpn15058.904WBGene00003904pabp-28655.000Caenorhabditis_elegans
ENSSDUG00000020582pabpn15579.394ENSCJAG00000004407-7880.128Callithrix_jacchus
ENSSDUG00000020582pabpn17875.217ENSCJAG00000007960-7976.018Callithrix_jacchus
ENSSDUG00000020582pabpn16781.773ENSCAFG00000011482PABPN18270.635Canis_familiaris
ENSSDUG00000020582pabpn16781.773ENSCAFG00020006651-8270.238Canis_lupus_dingo
ENSSDUG00000020582pabpn16781.773ENSCAFG00020007298-8270.238Canis_lupus_dingo
ENSSDUG00000020582pabpn16781.773ENSCHIG00000012184PABPN18270.238Capra_hircus
ENSSDUG00000020582pabpn17771.739ENSTSYG00000033996BCL2L2-PABPN18782.051Carlito_syrichta
ENSSDUG00000020582pabpn16781.773ENSCPOG00000025574PABPN16781.553Cavia_porcellus
ENSSDUG00000020582pabpn17875.217ENSCCAG00000033954BCL2L2-PABPN17976.018Cebus_capucinus
ENSSDUG00000020582pabpn17875.217ENSCATG00000038536BCL2L2-PABPN17976.018Cercocebus_atys
ENSSDUG00000020582pabpn15180.537ENSCLAG00000012423PABPN15282.014Chinchilla_lanigera
ENSSDUG00000020582pabpn16780.296ENSCSAG00000016036PABPN18269.048Chlorocebus_sabaeus
ENSSDUG00000020582pabpn17071.981ENSCHOG00000004798BCL2L2-PABPN18770.192Choloepus_hoffmanni
ENSSDUG00000020582pabpn15583.636ENSCPBG00000026060-8784.615Chrysemys_picta_bellii
ENSSDUG00000020582pabpn17061.538ENSCING00000012468-8464.000Ciona_intestinalis
ENSSDUG00000020582pabpn15962.857ENSCSAVG00000002001-8068.889Ciona_savignyi
ENSSDUG00000020582pabpn17771.739ENSCANG00000009750BCL2L2-PABPN18782.051Colobus_angolensis_palliatus
ENSSDUG00000020582pabpn16670.984ENSCANG00000030980-8364.035Colobus_angolensis_palliatus
ENSSDUG00000020582pabpn16781.281ENSCGRG00001019696Pabpn18781.410Cricetulus_griseus_chok1gshd
ENSSDUG00000020582pabpn15191.156ENSCGRG00000011102Pabpn19191.156Cricetulus_griseus_crigri
ENSSDUG00000020582pabpn18397.521ENSCSEG00000008774pabpn19997.380Cynoglossus_semilaevis
ENSSDUG00000020582pabpn110094.558ENSCVAG00000003152pabpn110095.578Cyprinodon_variegatus
ENSSDUG00000020582pabpn16354.645ENSDARG00000087996pabpn1l8659.184Danio_rerio
ENSSDUG00000020582pabpn110096.127ENSDARG00000045373pabpn110097.273Danio_rerio
ENSSDUG00000020582pabpn16781.773ENSDNOG00000023682PABPN18270.238Dasypus_novemcinctus
ENSSDUG00000020582pabpn16781.281ENSDORG00000028966-8269.444Dipodomys_ordii
ENSSDUG00000020582pabpn17857.692FBgn0005648Pabp29758.333Drosophila_melanogaster
ENSSDUG00000020582pabpn17872.489ENSEBUG00000002322pabpn19772.489Eptatretus_burgeri
ENSSDUG00000020582pabpn16782.266ENSEASG00005011716PABPN18570.498Equus_asinus_asinus
ENSSDUG00000020582pabpn16782.564ENSECAG00000011652PABPN18570.356Equus_caballus
ENSSDUG00000020582pabpn16779.803ENSEEUG00000012973-6978.325Erinaceus_europaeus
ENSSDUG00000020582pabpn17894.444ENSELUG00000022654pabpn19994.444Esox_lucius
ENSSDUG00000020582pabpn16781.773ENSFCAG00000031922PABPN18270.238Felis_catus
ENSSDUG00000020582pabpn15581.212ENSFDAG00000018381BCL2L2-PABPN19281.212Fukomys_damarensis
ENSSDUG00000020582pabpn17796.364ENSFHEG00000007215pabpn19995.197Fundulus_heteroclitus
ENSSDUG00000020582pabpn110092.632ENSGMOG00000003922pabpn110095.439Gadus_morhua
ENSSDUG00000020582pabpn16183.708ENSGALG00000052930-6279.909Gallus_gallus
ENSSDUG00000020582pabpn17897.403ENSGAFG00000017099pabpn19997.403Gambusia_affinis
ENSSDUG00000020582pabpn110097.887ENSGACG00000002167pabpn110097.887Gasterosteus_aculeatus
ENSSDUG00000020582pabpn17465.086ENSGGOG00000025919-9068.613Gorilla_gorilla
ENSSDUG00000020582pabpn17068.780ENSGGOG00000039675-8765.217Gorilla_gorilla
ENSSDUG00000020582pabpn17875.217ENSGGOG00000022683-7976.018Gorilla_gorilla
ENSSDUG00000020582pabpn17898.690ENSHBUG00000019523pabpn19998.690Haplochromis_burtoni
ENSSDUG00000020582pabpn16474.468ENSHGLG00000018588-7074.468Heterocephalus_glaber_female
ENSSDUG00000020582pabpn15562.195ENSHGLG00000009842-8764.052Heterocephalus_glaber_female
ENSSDUG00000020582pabpn16781.281ENSHGLG00000002927-9291.156Heterocephalus_glaber_female
ENSSDUG00000020582pabpn15568.902ENSHGLG00100018935-8874.051Heterocephalus_glaber_male
ENSSDUG00000020582pabpn16474.468ENSHGLG00100015565-8765.502Heterocephalus_glaber_male
ENSSDUG00000020582pabpn17671.493ENSHGLG00100006673-9291.156Heterocephalus_glaber_male
ENSSDUG00000020582pabpn17897.817ENSHCOG00000004655pabpn19997.817Hippocampus_comes
ENSSDUG00000020582pabpn110086.986ENSIPUG00000008085PABPN19997.380Ictalurus_punctatus
ENSSDUG00000020582pabpn17889.083ENSIPUG00000000180-9889.083Ictalurus_punctatus
ENSSDUG00000020582pabpn15581.212ENSSTOG00000029847BCL2L2-PABPN18782.051Ictidomys_tridecemlineatus
ENSSDUG00000020582pabpn15581.212ENSJJAG00000023507Gm205218782.051Jaculus_jaculus
ENSSDUG00000020582pabpn110097.544ENSKMAG00000018748pabpn110097.544Kryptolebias_marmoratus
ENSSDUG00000020582pabpn110099.296ENSLBEG00000027266pabpn110099.296Labrus_bergylta
ENSSDUG00000020582pabpn16288.764ENSLACG00000000646pabpn18585.052Latimeria_chalumnae
ENSSDUG00000020582pabpn16567.539ENSLOCG00000004694pabpn1l9366.337Lepisosteus_oculatus
ENSSDUG00000020582pabpn110092.281ENSLOCG00000000796pabpn110092.632Lepisosteus_oculatus
ENSSDUG00000020582pabpn15181.208ENSLAFG00000031227-9182.734Loxodonta_africana
ENSSDUG00000020582pabpn17771.739ENSMFAG00000032183BCL2L2-PABPN18782.051Macaca_fascicularis
ENSSDUG00000020582pabpn16767.327ENSMMUG00000048382-8558.366Macaca_mulatta
ENSSDUG00000020582pabpn17771.739ENSMMUG00000014747BCL2L2-PABPN19282.222Macaca_mulatta
ENSSDUG00000020582pabpn16268.306ENSMNEG00000035750-9073.846Macaca_nemestrina
ENSSDUG00000020582pabpn17875.217ENSMNEG00000045065BCL2L2-PABPN17976.018Macaca_nemestrina
ENSSDUG00000020582pabpn15665.244ENSMLEG00000034623-9272.727Mandrillus_leucophaeus
ENSSDUG00000020582pabpn17771.739ENSMLEG00000043862BCL2L2-PABPN18782.051Mandrillus_leucophaeus
ENSSDUG00000020582pabpn110097.945ENSMAMG00000007979pabpn110097.945Mastacembelus_armatus
ENSSDUG00000020582pabpn110098.592ENSMZEG00005011904pabpn110098.592Maylandia_zebra
ENSSDUG00000020582pabpn17771.739ENSMAUG00000007383Gm205218370.000Mesocricetus_auratus
ENSSDUG00000020582pabpn17875.758ENSMICG00000010002BCL2L2-PABPN17976.786Microcebus_murinus
ENSSDUG00000020582pabpn17771.304ENSMOCG00000018557Gm205219091.156Microtus_ochrogaster
ENSSDUG00000020582pabpn110098.944ENSMMOG00000005405pabpn110098.944Mola_mola
ENSSDUG00000020582pabpn16779.703ENSMODG00000004535-8570.115Monodelphis_domestica
ENSSDUG00000020582pabpn110098.944ENSMALG00000019612pabpn110098.944Monopterus_albus
ENSSDUG00000020582pabpn17770.870MGP_CAROLIEiJ_G0019276Gm205216671.041Mus_caroli
ENSSDUG00000020582pabpn16780.296MGP_CAROLIEiJ_G0019277Pabpn19090.476Mus_caroli
ENSSDUG00000020582pabpn16780.788ENSMUSG00000022194Pabpn19090.476Mus_musculus
ENSSDUG00000020582pabpn17771.304ENSMUSG00000092232Gm205216671.493Mus_musculus
ENSSDUG00000020582pabpn16780.788MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSSDUG00000020582pabpn17771.304MGP_PahariEiJ_G0030294Gm205216671.493Mus_pahari
ENSSDUG00000020582pabpn17771.304MGP_SPRETEiJ_G0020165Gm205216671.493Mus_spretus
ENSSDUG00000020582pabpn16780.788MGP_SPRETEiJ_G0020166Pabpn19090.476Mus_spretus
ENSSDUG00000020582pabpn15482.051ENSMPUG00000006775-9282.051Mustela_putorius_furo
ENSSDUG00000020582pabpn16680.513ENSMLUG00000028677-8072.768Myotis_lucifugus
ENSSDUG00000020582pabpn16382.353ENSMLUG00000003800-9483.146Myotis_lucifugus
ENSSDUG00000020582pabpn16480.214ENSMLUG00000012452-8170.281Myotis_lucifugus
ENSSDUG00000020582pabpn17772.174ENSNGAG00000019529Gm205216672.398Nannospalax_galili
ENSSDUG00000020582pabpn110098.944ENSNBRG00000023955pabpn110098.944Neolamprologus_brichardi
ENSSDUG00000020582pabpn15059.310ENSNLEG00000035292-9462.687Nomascus_leucogenys
ENSSDUG00000020582pabpn16781.773ENSNLEG00000015007-7082.234Nomascus_leucogenys
ENSSDUG00000020582pabpn16867.980ENSNLEG00000030598-7770.526Nomascus_leucogenys
ENSSDUG00000020582pabpn15971.591ENSODEG00000011555-8173.026Octodon_degus
ENSSDUG00000020582pabpn17771.304ENSODEG00000002083BCL2L2-PABPN16481.726Octodon_degus
ENSSDUG00000020582pabpn16773.500ENSODEG00000003739-8863.786Octodon_degus
ENSSDUG00000020582pabpn110098.944ENSONIG00000008112pabpn110098.944Oreochromis_niloticus
ENSSDUG00000020582pabpn16781.281ENSOCUG00000016174PABPN19069.721Oryctolagus_cuniculus
ENSSDUG00000020582pabpn110098.630ENSORLG00000027900pabpn110098.630Oryzias_latipes
ENSSDUG00000020582pabpn110098.630ENSORLG00020004681pabpn110098.630Oryzias_latipes_hni
ENSSDUG00000020582pabpn110098.630ENSORLG00015000018pabpn110098.630Oryzias_latipes_hsok
ENSSDUG00000020582pabpn110098.592ENSOMEG00000016618pabpn110098.592Oryzias_melastigma
ENSSDUG00000020582pabpn16781.773ENSOGAG00000008710PABPN18270.238Otolemur_garnettii
ENSSDUG00000020582pabpn17771.739ENSOARG00000019336BCL2L2-PABPN16171.946Ovis_aries
ENSSDUG00000020582pabpn15566.667ENSPPAG00000039421-8766.667Pan_paniscus
ENSSDUG00000020582pabpn17771.739ENSPPAG00000028984BCL2L2-PABPN19282.051Pan_paniscus
ENSSDUG00000020582pabpn16781.773ENSPPRG00000010567PABPN18270.238Panthera_pardus
ENSSDUG00000020582pabpn15581.212ENSPTIG00000001063BCL2L2-PABPN18782.051Panthera_tigris_altaica
ENSSDUG00000020582pabpn17875.217ENSPTRG00000006167BCL2L27976.018Pan_troglodytes
ENSSDUG00000020582pabpn17862.500ENSPTRG00000047273-8959.917Pan_troglodytes
ENSSDUG00000020582pabpn16668.718ENSPANG00000023326-9074.615Papio_anubis
ENSSDUG00000020582pabpn17875.217ENSPANG00000021100BCL2L2-PABPN17976.018Papio_anubis
ENSSDUG00000020582pabpn110089.510ENSPKIG00000018052pabpn19995.217Paramormyrops_kingsleyae
ENSSDUG00000020582pabpn110095.775ENSPKIG00000008144-10095.775Paramormyrops_kingsleyae
ENSSDUG00000020582pabpn15869.512ENSPKIG00000008340pabpn1l8667.039Paramormyrops_kingsleyae
ENSSDUG00000020582pabpn110092.958ENSPMGG00000022027pabpn110092.958Periophthalmus_magnuspinnatus
ENSSDUG00000020582pabpn17771.739ENSPEMG00000008332Gm205218991.156Peromyscus_maniculatus_bairdii
ENSSDUG00000020582pabpn16475.806ENSPMAG00000006212pabpn19469.231Petromyzon_marinus
ENSSDUG00000020582pabpn16779.208ENSPCIG00000027751-8269.841Phascolarctos_cinereus
ENSSDUG00000020582pabpn110097.279ENSPFOG00000010351pabpn110097.279Poecilia_formosa
ENSSDUG00000020582pabpn110097.279ENSPLAG00000022696pabpn110097.279Poecilia_latipinna
ENSSDUG00000020582pabpn17896.970ENSPMEG00000020856pabpn19996.970Poecilia_mexicana
ENSSDUG00000020582pabpn110097.552ENSPREG00000011278pabpn110097.552Poecilia_reticulata
ENSSDUG00000020582pabpn16682.474ENSPPYG00000005663PABPN18970.238Pongo_abelii
ENSSDUG00000020582pabpn16469.271ENSPCAG00000005902PABPN18460.000Procavia_capensis
ENSSDUG00000020582pabpn17875.758ENSPCOG00000028047BCL2L2-PABPN17976.786Propithecus_coquereli
ENSSDUG00000020582pabpn16880.097ENSPVAG00000005270PABPN18269.323Pteropus_vampyrus
ENSSDUG00000020582pabpn17898.690ENSPNYG00000013182pabpn19998.690Pundamilia_nyererei
ENSSDUG00000020582pabpn15569.620ENSPNAG00000021666pabpn1l9565.641Pygocentrus_nattereri
ENSSDUG00000020582pabpn110096.127ENSPNAG00000023526pabpn19997.817Pygocentrus_nattereri
ENSSDUG00000020582pabpn16781.281ENSRNOG00000042195Pabpn18170.000Rattus_norvegicus
ENSSDUG00000020582pabpn17071.635ENSRBIG00000039547-7866.038Rhinopithecus_bieti
ENSSDUG00000020582pabpn17671.946ENSRBIG00000040762BCL2L2-PABPN16871.946Rhinopithecus_bieti
ENSSDUG00000020582pabpn16970.048ENSRBIG00000042811-8770.732Rhinopithecus_bieti
ENSSDUG00000020582pabpn16966.507ENSRROG00000036409-6864.384Rhinopithecus_roxellana
ENSSDUG00000020582pabpn17466.063ENSRROG00000040409-7866.038Rhinopithecus_roxellana
ENSSDUG00000020582pabpn17671.946ENSRROG00000045535BCL2L2-PABPN18782.051Rhinopithecus_roxellana
ENSSDUG00000020582pabpn17767.901ENSSBOG00000026930BCL2L2-PABPN19282.051Saimiri_boliviensis_boliviensis
ENSSDUG00000020582pabpn16380.645ENSSHAG00000014841-8183.708Sarcophilus_harrisii
ENSSDUG00000020582pabpn17861.702ENSSHAG00000007707-9859.149Sarcophilus_harrisii
ENSSDUG00000020582pabpn17896.507ENSSFOG00015014718pabpn19996.507Scleropages_formosus
ENSSDUG00000020582pabpn16465.027ENSSFOG00015015833pabpn1l8466.120Scleropages_formosus
ENSSDUG00000020582pabpn110089.825ENSSFOG00015012565pabpn110089.825Scleropages_formosus
ENSSDUG00000020582pabpn110098.944ENSSMAG00000020157pabpn110098.944Scophthalmus_maximus
ENSSDUG00000020582pabpn17899.563ENSSLDG00000007118pabpn19999.563Seriola_lalandi_dorsalis
ENSSDUG00000020582pabpn15086.301ENSSPUG00000018308-8784.615Sphenodon_punctatus
ENSSDUG00000020582pabpn110098.246ENSSPAG00000021658pabpn110098.246Stegastes_partitus
ENSSDUG00000020582pabpn17362.150ENSSSCG00000034805-7561.905Sus_scrofa
ENSSDUG00000020582pabpn16782.266ENSSSCG00000002023PABPN18570.498Sus_scrofa
ENSSDUG00000020582pabpn110097.887ENSTRUG00000023664pabpn110097.887Takifugu_rubripes
ENSSDUG00000020582pabpn17198.010ENSTNIG00000005369pabpn19398.010Tetraodon_nigroviridis
ENSSDUG00000020582pabpn16781.773ENSUAMG00000024460PABPN16482.234Ursus_americanus
ENSSDUG00000020582pabpn17772.174ENSUMAG00000014288BCL2L2-PABPN16671.946Ursus_maritimus
ENSSDUG00000020582pabpn17771.739ENSVVUG00000019912BCL2L2-PABPN17182.967Vulpes_vulpes
ENSSDUG00000020582pabpn16586.010ENSXETG00000014597pabpn16983.333Xenopus_tropicalis
ENSSDUG00000020582pabpn15885.465ENSXCOG00000005158pabpn19685.465Xiphophorus_couchianus
ENSSDUG00000020582pabpn110097.959ENSXMAG00000006196pabpn110097.959Xiphophorus_maculatus

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