EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000020599 (Gene tree)
Gene ID: 111219332
Gene Symbol: -
Alias: -
Full Name: ADP ribosylation factor 4
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 3611 bases
Position: chrBDQW01000066.1:3021640-3025250
Accession: 111219332
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000028518	MMR_HSR1	PF01926.23	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000029011	-	1945	XM_022741967	ENSSDUP00000028518	179 (aa)	XP_022597688	UPI000BBF2473

Gene Model

Click here to download ENSSDUG00000020599's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000020599's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000020599	-	96	46.667	ENSSDUG00000011151	-	90	46.667
ENSSDUG00000020599	-	93	43.114	ENSSDUG00000013976	arl3	92	43.114
ENSSDUG00000020599	-	83	32.680	ENSSDUG00000000578	arl8a	82	32.680
ENSSDUG00000020599	-	94	42.353	ENSSDUG00000003943	arl3l2	91	42.353
ENSSDUG00000020599	-	100	67.778	ENSSDUG00000005105	arf5	100	67.778
ENSSDUG00000020599	-	74	34.014	ENSSDUG00000016888	rab1ab	64	34.014
ENSSDUG00000020599	-	60	33.913	ENSSDUG00000010773	sar1ab	82	33.913
ENSSDUG00000020599	-	69	34.328	ENSSDUG00000022535	RAB1A	63	34.328
ENSSDUG00000020599	-	98	66.667	ENSSDUG00000007524	arf3b	96	66.667
ENSSDUG00000020599	-	69	30.000	ENSSDUG00000004950	rab35b	63	30.000
ENSSDUG00000020599	-	98	66.102	ENSSDUG00000017254	-	98	66.102
ENSSDUG00000020599	-	98	67.232	ENSSDUG00000017356	-	96	67.052
ENSSDUG00000020599	-	86	45.513	ENSSDUG00000004422	arl11	92	45.513
ENSSDUG00000020599	-	69	34.328	ENSSDUG00000004698	rab1ba	63	34.328
ENSSDUG00000020599	-	83	32.680	ENSSDUG00000021055	arl8ba	69	32.680
ENSSDUG00000020599	-	94	46.369	ENSSDUG00000000586	arl4aa	90	46.369
ENSSDUG00000020599	-	78	34.839	ENSSDUG00000006652	ARL6	82	34.194
ENSSDUG00000020599	-	89	45.342	ENSSDUG00000021397	arl2	96	43.258
ENSSDUG00000020599	-	100	67.778	ENSSDUG00000007780	arf2b	99	67.778
ENSSDUG00000020599	-	70	30.000	ENSSDUG00000005719	si:dkey-16l2.16	61	30.000
ENSSDUG00000020599	-	98	46.591	ENSSDUG00000007515	ARL5B	98	46.591
ENSSDUG00000020599	-	80	30.065	ENSSDUG00000004445	zgc:171927	68	30.065
ENSSDUG00000020599	-	96	46.629	ENSSDUG00000012868	arl4cb	93	46.629
ENSSDUG00000020599	-	60	33.043	ENSSDUG00000020926	sar1b	93	33.043
ENSSDUG00000020599	-	83	33.987	ENSSDUG00000012529	arl8bb	82	33.987
ENSSDUG00000020599	-	94	55.294	ENSSDUG00000013898	arl1	96	55.294
ENSSDUG00000020599	-	66	30.894	ENSSDUG00000006307	-	61	30.894
ENSSDUG00000020599	-	91	42.515	ENSSDUG00000013427	-	91	42.515
ENSSDUG00000020599	-	96	45.455	ENSSDUG00000017586	-	93	45.455
ENSSDUG00000020599	-	91	48.521	ENSSDUG00000010935	arl4d	84	48.521
ENSSDUG00000020599	-	89	42.500	ENSSDUG00000004762	-	88	42.500
ENSSDUG00000020599	-	100	67.222	ENSSDUG00000014675	-	100	67.222
ENSSDUG00000020599	-	98	44.633	ENSSDUG00000012261	arl5a	98	44.633
ENSSDUG00000020599	-	99	42.135	ENSSDUG00000022640	arl5c	99	42.135
ENSSDUG00000020599	-	65	51.695	ENSSDUG00000023723	-	100	51.695
ENSSDUG00000020599	-	100	32.642	ENSSDUG00000007121	arfrp1	95	32.642
ENSSDUG00000020599	-	50	35.955	ENSSDUG00000019629	-	68	35.955
ENSSDUG00000020599	-	98	66.667	ENSSDUG00000013041	-	98	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000020599	-	100	85.475	ENSAPEG00000002838	-	100	85.475	Amphiprion_percula
ENSSDUG00000020599	-	90	81.366	ENSATEG00000003808	-	92	81.366	Anabas_testudineus
ENSSDUG00000020599	-	99	85.955	ENSATEG00000003847	-	99	85.955	Anabas_testudineus
ENSSDUG00000020599	-	95	84.118	ENSACLG00000009822	-	91	84.118	Astatotilapia_calliptera
ENSSDUG00000020599	-	82	74.658	ENSCVAG00000013902	-	89	74.658	Cyprinodon_variegatus
ENSSDUG00000020599	-	88	87.898	ENSFHEG00000019659	-	89	87.898	Fundulus_heteroclitus
ENSSDUG00000020599	-	62	90.090	ENSGAFG00000002801	-	98	90.090	Gambusia_affinis
ENSSDUG00000020599	-	99	88.268	ENSGACG00000003831	-	99	88.268	Gasterosteus_aculeatus
ENSSDUG00000020599	-	100	81.564	ENSHBUG00000001250	-	100	81.564	Haplochromis_burtoni
ENSSDUG00000020599	-	98	87.500	ENSLBEG00000027205	-	99	87.500	Labrus_bergylta
ENSSDUG00000020599	-	100	84.358	ENSMAMG00000013955	-	100	84.358	Mastacembelus_armatus
ENSSDUG00000020599	-	100	83.799	ENSMZEG00005016274	-	100	83.799	Maylandia_zebra
ENSSDUG00000020599	-	100	83.799	ENSMZEG00005016277	-	100	83.799	Maylandia_zebra
ENSSDUG00000020599	-	100	82.123	ENSMMOG00000013651	-	99	82.123	Mola_mola
ENSSDUG00000020599	-	100	82.123	ENSONIG00000004340	-	100	82.123	Oreochromis_niloticus
ENSSDUG00000020599	-	100	85.475	ENSPLAG00000015887	-	100	85.475	Poecilia_latipinna
ENSSDUG00000020599	-	100	85.475	ENSPMEG00000007064	-	100	85.475	Poecilia_mexicana
ENSSDUG00000020599	-	96	86.550	ENSPREG00000000912	-	100	86.550	Poecilia_reticulata
ENSSDUG00000020599	-	99	75.481	ENSSMAG00000002487	-	99	75.481	Scophthalmus_maximus
ENSSDUG00000020599	-	100	98.324	ENSSLDG00000020097	-	100	98.324	Seriola_lalandi_dorsalis
ENSSDUG00000020599	-	100	87.151	ENSSPAG00000017484	-	100	87.151	Stegastes_partitus
ENSSDUG00000020599	-	89	76.101	ENSTRUG00000025171	-	98	76.101	Takifugu_rubripes
ENSSDUG00000020599	-	62	82.883	ENSTNIG00000005043	-	98	82.883	Tetraodon_nigroviridis
ENSSDUG00000020599	-	83	78.523	ENSTNIG00000001632	-	78	71.186	Tetraodon_nigroviridis
ENSSDUG00000020599	-	83	75.333	ENSTNIG00000018302	-	78	68.539	Tetraodon_nigroviridis
ENSSDUG00000020599	-	87	75.641	ENSTNIG00000000796	-	78	70.621	Tetraodon_nigroviridis
ENSSDUG00000020599	-	100	85.475	ENSXMAG00000029601	-	100	85.475	Xiphophorus_maculatus