EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000020610 (Gene tree)
Gene ID: 111223220
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 6002 bases
Position: chrBDQW01000110.1:11733561-11739562
Accession: 111223220
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000028539	zf-C2H2	PF00096.26	7.8e-19	1	3
ENSSDUP00000028539	zf-C2H2	PF00096.26	7.8e-19	2	3
ENSSDUP00000028539	zf-C2H2	PF00096.26	7.8e-19	3	3
ENSSDUP00000028539	zf-met	PF12874.7	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000029030	-	3297	XM_022747283	ENSSDUP00000028539	625 (aa)	XP_022603004	UPI000BBE90B4

Gene Model

Click here to download ENSSDUG00000020610's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000020610's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000020610	prdm1b	73	73.144	ENSAPOG00000022084	prdm1b	95	74.236	Acanthochromis_polyacanthus
ENSSDUG00000020610	prdm1b	87	37.977	ENSAPOG00000014135	-	74	37.977	Acanthochromis_polyacanthus
ENSSDUG00000020610	prdm1b	97	81.148	ENSACIG00000014426	prdm1b	98	81.148	Amphilophus_citrinellus
ENSSDUG00000020610	prdm1b	56	64.286	ENSACIG00000009747	-	79	37.249	Amphilophus_citrinellus
ENSSDUG00000020610	prdm1b	95	76.975	ENSAOCG00000002230	prdm1b	99	77.143	Amphiprion_ocellaris
ENSSDUG00000020610	prdm1b	100	76.911	ENSAPEG00000019826	prdm1b	100	77.070	Amphiprion_percula
ENSSDUG00000020610	prdm1b	100	89.968	ENSATEG00000006924	prdm1b	100	89.968	Anabas_testudineus
ENSSDUG00000020610	prdm1b	60	61.972	ENSATEG00000021017	prdm1a	59	61.972	Anabas_testudineus
ENSSDUG00000020610	prdm1b	74	64.286	ENSATEG00000014034	-	62	64.286	Anabas_testudineus
ENSSDUG00000020610	prdm1b	93	84.391	ENSACLG00000005487	prdm1b	90	84.391	Astatotilapia_calliptera
ENSSDUG00000020610	prdm1b	65	60.563	ENSCSEG00000009707	prdm1a	59	60.563	Cynoglossus_semilaevis
ENSSDUG00000020610	prdm1b	71	63.380	ENSCVAG00000019081	prdm1a	65	63.380	Cyprinodon_variegatus
ENSSDUG00000020610	prdm1b	99	78.914	ENSCVAG00000016746	prdm1b	99	78.400	Cyprinodon_variegatus
ENSSDUG00000020610	prdm1b	100	79.266	ENSFHEG00000019848	prdm1b	100	79.266	Fundulus_heteroclitus
ENSSDUG00000020610	prdm1b	97	79.194	ENSGAFG00000016191	prdm1b	97	79.355	Gambusia_affinis
ENSSDUG00000020610	prdm1b	91	74.468	ENSGACG00000002716	prdm1b	86	74.468	Gasterosteus_aculeatus
ENSSDUG00000020610	prdm1b	92	85.026	ENSHBUG00000001475	prdm1b	95	85.026	Haplochromis_burtoni
ENSSDUG00000020610	prdm1b	100	76.789	ENSHCOG00000003617	prdm1b	100	76.789	Hippocampus_comes
ENSSDUG00000020610	prdm1b	85	72.727	ENSIPUG00000013740	prdm1b	92	54.530	Ictalurus_punctatus
ENSSDUG00000020610	prdm1b	74	63.380	ENSKMAG00000017597	prdm1a	59	42.444	Kryptolebias_marmoratus
ENSSDUG00000020610	prdm1b	92	75.436	ENSKMAG00000011218	prdm1b	91	75.436	Kryptolebias_marmoratus
ENSSDUG00000020610	prdm1b	87	39.309	ENSKMAG00000016247	-	74	39.309	Kryptolebias_marmoratus
ENSSDUG00000020610	prdm1b	100	88.553	ENSLBEG00000020955	prdm1b	100	88.553	Labrus_bergylta
ENSSDUG00000020610	prdm1b	81	76.056	ENSLOCG00000004978	prdm1b	66	76.056	Lepisosteus_oculatus
ENSSDUG00000020610	prdm1b	100	82.643	ENSMZEG00005026361	prdm1b	95	82.643	Maylandia_zebra
ENSSDUG00000020610	prdm1b	93	85.445	ENSMMOG00000013458	prdm1b	96	85.445	Mola_mola
ENSSDUG00000020610	prdm1b	97	81.015	ENSMALG00000011410	prdm1b	99	81.178	Monopterus_albus
ENSSDUG00000020610	prdm1b	90	69.097	ENSONIG00000013583	prdm1b	86	69.206	Oreochromis_niloticus
ENSSDUG00000020610	prdm1b	99	69.470	ENSORLG00000010025	prdm1b	99	69.315	Oryzias_latipes
ENSSDUG00000020610	prdm1b	90	71.453	ENSORLG00015009022	prdm1b	92	71.404	Oryzias_latipes_hsok
ENSSDUG00000020610	prdm1b	99	47.749	ENSPKIG00000022335	prdm1b	82	47.267	Paramormyrops_kingsleyae
ENSSDUG00000020610	prdm1b	86	70.450	ENSPFOG00000003103	prdm1b	85	70.450	Poecilia_formosa
ENSSDUG00000020610	prdm1b	99	81.529	ENSPLAG00000018491	prdm1b	99	81.529	Poecilia_latipinna
ENSSDUG00000020610	prdm1b	100	83.121	ENSPMEG00000007869	prdm1b	100	83.121	Poecilia_mexicana
ENSSDUG00000020610	prdm1b	99	81.329	ENSPREG00000011327	prdm1b	99	81.329	Poecilia_reticulata
ENSSDUG00000020610	prdm1b	70	66.197	ENSPVAG00000011732	PRDM1	81	39.426	Pteropus_vampyrus
ENSSDUG00000020610	prdm1b	89	42.140	ENSPNAG00000028442	prdm1a	75	42.140	Pygocentrus_nattereri
ENSSDUG00000020610	prdm1b	90	61.989	ENSSFOG00015021896	prdm1b	77	61.989	Scleropages_formosus
ENSSDUG00000020610	prdm1b	100	88.198	ENSSMAG00000020467	prdm1b	100	88.198	Scophthalmus_maximus
ENSSDUG00000020610	prdm1b	91	38.066	ENSSMAG00000017518	-	78	38.066	Scophthalmus_maximus
ENSSDUG00000020610	prdm1b	99	99.035	ENSSLDG00000021973	prdm1b	99	96.880	Seriola_lalandi_dorsalis
ENSSDUG00000020610	prdm1b	100	81.659	ENSSPAG00000000803	prdm1b	100	82.456	Stegastes_partitus
ENSSDUG00000020610	prdm1b	87	38.640	ENSSPAG00000009830	-	74	38.640	Stegastes_partitus
ENSSDUG00000020610	prdm1b	95	81.008	ENSXCOG00000018920	prdm1b	84	81.008	Xiphophorus_couchianus
ENSSDUG00000020610	prdm1b	99	75.039	ENSXMAG00000016765	prdm1b	97	77.167	Xiphophorus_maculatus