EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000020694 (Gene tree)
Gene ID: 111232995
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 17632 bases
Position: chrBDQW01000362.1:559364-576995
Accession: 111232995
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	1	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	2	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	3	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	4	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	5	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	6	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	7	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	8	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	9	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	10	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	11	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	12	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	13	14
ENSSDUP00000028712	KH_1	PF00013.29	1.7e-188	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000029205	-	7113	XM_022760712	ENSSDUP00000028712	1267 (aa)	XP_022616433	UPI000BBE2C65

Gene Model

Click here to download ENSSDUG00000020694's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000020694's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000020694	hdlbpb	100	71.217	ENSSDUG00000022258	hdlbpa	100	71.061

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000020694	hdlbpb	100	98.344	ENSAPOG00000006904	hdlbpb	100	98.344	Acanthochromis_polyacanthus
ENSSDUG00000020694	hdlbpb	100	92.302	ENSACIG00000016154	hdlbpb	100	92.302	Amphilophus_citrinellus
ENSSDUG00000020694	hdlbpb	100	98.896	ENSAOCG00000004083	hdlbpb	100	98.896	Amphiprion_ocellaris
ENSSDUG00000020694	hdlbpb	100	98.817	ENSAPEG00000012270	hdlbpb	100	98.817	Amphiprion_percula
ENSSDUG00000020694	hdlbpb	100	97.082	ENSATEG00000019877	hdlbpb	100	97.082	Anabas_testudineus
ENSSDUG00000020694	hdlbpb	100	81.926	ENSACAG00000003606	-	100	81.926	Anolis_carolinensis
ENSSDUG00000020694	hdlbpb	100	97.634	ENSACLG00000006618	hdlbpb	100	97.634	Astatotilapia_calliptera
ENSSDUG00000020694	hdlbpb	100	78.110	ENSAMXG00000019946	hdlbpb	100	78.110	Astyanax_mexicanus
ENSSDUG00000020694	hdlbpb	100	96.688	ENSCSEG00000000955	hdlbpb	100	96.688	Cynoglossus_semilaevis
ENSSDUG00000020694	hdlbpb	100	96.530	ENSCVAG00000005345	hdlbpb	100	96.530	Cyprinodon_variegatus
ENSSDUG00000020694	hdlbpb	99	85.308	ENSDARG00000061864	hdlbpb	99	85.308	Danio_rerio
ENSSDUG00000020694	hdlbpb	92	69.974	ENSEBUG00000005304	hdlbpb	94	70.942	Eptatretus_burgeri
ENSSDUG00000020694	hdlbpb	100	78.381	ENSELUG00000019925	hdlbpb	100	78.538	Esox_lucius
ENSSDUG00000020694	hdlbpb	87	34.658	ENSFHEG00000001701	hdlbpb	100	91.239	Fundulus_heteroclitus
ENSSDUG00000020694	hdlbpb	95	88.310	ENSGMOG00000004522	hdlbpb	78	88.310	Gadus_morhua
ENSSDUG00000020694	hdlbpb	100	96.057	ENSGAFG00000005278	hdlbpb	100	96.057	Gambusia_affinis
ENSSDUG00000020694	hdlbpb	99	93.054	ENSGACG00000019361	hdlbpb	100	93.291	Gasterosteus_aculeatus
ENSSDUG00000020694	hdlbpb	100	97.476	ENSHBUG00000018434	hdlbpb	100	97.476	Haplochromis_burtoni
ENSSDUG00000020694	hdlbpb	100	85.106	ENSIPUG00000003291	HDLBP	100	85.515	Ictalurus_punctatus
ENSSDUG00000020694	hdlbpb	100	97.161	ENSKMAG00000016562	hdlbpb	100	97.161	Kryptolebias_marmoratus
ENSSDUG00000020694	hdlbpb	100	97.476	ENSLBEG00000027855	hdlbpb	100	97.476	Labrus_bergylta
ENSSDUG00000020694	hdlbpb	100	85.189	ENSLACG00000007661	hdlbpb	90	85.189	Latimeria_chalumnae
ENSSDUG00000020694	hdlbpb	100	83.044	ENSLOCG00000013909	hdlbpb	100	83.044	Lepisosteus_oculatus
ENSSDUG00000020694	hdlbpb	100	97.950	ENSMAMG00000003035	hdlbpb	100	97.950	Mastacembelus_armatus
ENSSDUG00000020694	hdlbpb	100	97.634	ENSMZEG00005021465	hdlbpb	100	97.634	Maylandia_zebra
ENSSDUG00000020694	hdlbpb	100	96.527	ENSMMOG00000012525	hdlbpb	100	96.527	Mola_mola
ENSSDUG00000020694	hdlbpb	100	95.584	ENSMALG00000008938	hdlbpb	100	95.584	Monopterus_albus
ENSSDUG00000020694	hdlbpb	100	97.713	ENSNBRG00000002236	hdlbpb	100	97.713	Neolamprologus_brichardi
ENSSDUG00000020694	hdlbpb	100	97.397	ENSONIG00000009211	hdlbpb	100	97.397	Oreochromis_niloticus
ENSSDUG00000020694	hdlbpb	100	95.426	ENSORLG00000006581	hdlbpb	100	95.426	Oryzias_latipes
ENSSDUG00000020694	hdlbpb	100	95.505	ENSORLG00020010012	hdlbpb	100	95.505	Oryzias_latipes_hni
ENSSDUG00000020694	hdlbpb	100	95.741	ENSORLG00015006863	hdlbpb	100	95.741	Oryzias_latipes_hsok
ENSSDUG00000020694	hdlbpb	100	95.820	ENSOMEG00000011131	hdlbpb	100	95.820	Oryzias_melastigma
ENSSDUG00000020694	hdlbpb	100	88.871	ENSPKIG00000005966	hdlbpb	100	88.871	Paramormyrops_kingsleyae
ENSSDUG00000020694	hdlbpb	86	92.778	ENSPMGG00000019853	hdlbpb	99	92.778	Periophthalmus_magnuspinnatus
ENSSDUG00000020694	hdlbpb	92	64.901	ENSPMAG00000000249	-	99	64.968	Petromyzon_marinus
ENSSDUG00000020694	hdlbpb	94	74.671	ENSPMAG00000002131	hdlbpb	100	74.671	Petromyzon_marinus
ENSSDUG00000020694	hdlbpb	100	95.476	ENSPFOG00000008755	hdlbpb	100	95.476	Poecilia_formosa
ENSSDUG00000020694	hdlbpb	100	96.530	ENSPLAG00000007055	hdlbpb	100	96.530	Poecilia_latipinna
ENSSDUG00000020694	hdlbpb	100	96.451	ENSPMEG00000001952	hdlbpb	100	96.451	Poecilia_mexicana
ENSSDUG00000020694	hdlbpb	100	96.372	ENSPREG00000012848	hdlbpb	100	96.372	Poecilia_reticulata
ENSSDUG00000020694	hdlbpb	100	97.474	ENSPNYG00000022467	hdlbpb	100	97.474	Pundamilia_nyererei
ENSSDUG00000020694	hdlbpb	100	87.687	ENSPNAG00000011104	hdlbpb	100	87.687	Pygocentrus_nattereri
ENSSDUG00000020694	hdlbpb	100	88.319	ENSSFOG00015023199	hdlbpb	100	88.319	Scleropages_formosus
ENSSDUG00000020694	hdlbpb	100	97.476	ENSSMAG00000008790	hdlbpb	100	97.476	Scophthalmus_maximus
ENSSDUG00000020694	hdlbpb	100	99.290	ENSSLDG00000020807	hdlbpb	100	99.290	Seriola_lalandi_dorsalis
ENSSDUG00000020694	hdlbpb	100	82.715	ENSSPUG00000018688	-	100	82.715	Sphenodon_punctatus
ENSSDUG00000020694	hdlbpb	100	98.817	ENSSPAG00000016969	hdlbpb	100	98.817	Stegastes_partitus
ENSSDUG00000020694	hdlbpb	98	93.112	ENSTRUG00000012888	hdlbpb	99	93.032	Takifugu_rubripes
ENSSDUG00000020694	hdlbpb	99	94.518	ENSTNIG00000002555	hdlbpb	100	94.518	Tetraodon_nigroviridis
ENSSDUG00000020694	hdlbpb	100	84.229	ENSXCOG00000001797	hdlbpb	100	84.229	Xiphophorus_couchianus
ENSSDUG00000020694	hdlbpb	100	95.662	ENSXMAG00000015633	hdlbpb	100	95.662	Xiphophorus_maculatus