EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000020741 (Gene tree)
Gene ID: 111236287
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 26496 bases
Position: chrBDQW01000621.1:1956677-1983172
Accession: 111236287
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000028753	RRM_1	PF00076.22	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000029246	-	5616	XM_022764963	ENSSDUP00000028753	1637 (aa)	XP_022620684	-

Gene Model

Click here to download ENSSDUG00000020741's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000020741's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000020741	tnrc6c2	100	58.569	ENSSDUG00000002366	tnrc6c1	93	57.679

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000020741	tnrc6c2	100	91.180	ENSAOCG00000017648	tnrc6c2	87	91.180	Amphiprion_ocellaris
ENSSDUG00000020741	tnrc6c2	95	91.050	ENSATEG00000003656	tnrc6c2	57	91.050	Anabas_testudineus
ENSSDUG00000020741	tnrc6c2	100	90.505	ENSACLG00000006469	tnrc6c2	88	90.201	Astatotilapia_calliptera
ENSSDUG00000020741	tnrc6c2	100	59.440	ENSAMXG00000009579	tnrc6c2	99	58.170	Astyanax_mexicanus
ENSSDUG00000020741	tnrc6c2	100	59.545	ENSDARG00000103851	tnrc6c2	100	56.998	Danio_rerio
ENSSDUG00000020741	tnrc6c2	96	56.371	ENSELUG00000008149	-	88	54.819	Esox_lucius
ENSSDUG00000020741	tnrc6c2	100	61.872	ENSELUG00000007206	tnrc6c2	99	61.276	Esox_lucius
ENSSDUG00000020741	tnrc6c2	100	82.746	ENSFHEG00000003901	tnrc6c2	100	83.718	Fundulus_heteroclitus
ENSSDUG00000020741	tnrc6c2	57	82.273	ENSGACG00000019401	tnrc6c2	90	78.979	Gasterosteus_aculeatus
ENSSDUG00000020741	tnrc6c2	100	90.566	ENSHBUG00000018310	tnrc6c2	88	90.262	Haplochromis_burtoni
ENSSDUG00000020741	tnrc6c2	100	83.586	ENSHCOG00000017802	tnrc6c2	87	81.950	Hippocampus_comes
ENSSDUG00000020741	tnrc6c2	100	55.769	ENSIPUG00000022767	tnrc6c2	99	53.317	Ictalurus_punctatus
ENSSDUG00000020741	tnrc6c2	100	91.844	ENSMAMG00000001718	tnrc6c2	100	91.966	Mastacembelus_armatus
ENSSDUG00000020741	tnrc6c2	100	90.566	ENSMZEG00005023905	tnrc6c2	88	90.262	Maylandia_zebra
ENSSDUG00000020741	tnrc6c2	100	89.480	ENSMALG00000020932	tnrc6c2	100	89.843	Monopterus_albus
ENSSDUG00000020741	tnrc6c2	95	90.639	ENSNBRG00000000452	tnrc6c2	57	90.749	Neolamprologus_brichardi
ENSSDUG00000020741	tnrc6c2	98	85.447	ENSONIG00000018123	tnrc6c2	97	94.633	Oreochromis_niloticus
ENSSDUG00000020741	tnrc6c2	100	84.044	ENSORLG00000003327	tnrc6c2	87	83.496	Oryzias_latipes
ENSSDUG00000020741	tnrc6c2	100	83.618	ENSORLG00020010730	tnrc6c2	87	83.252	Oryzias_latipes_hni
ENSSDUG00000020741	tnrc6c2	100	83.983	ENSORLG00015009232	tnrc6c2	87	83.618	Oryzias_latipes_hsok
ENSSDUG00000020741	tnrc6c2	100	84.246	ENSOMEG00000017952	tnrc6c2	87	84.307	Oryzias_melastigma
ENSSDUG00000020741	tnrc6c2	95	78.155	ENSPFOG00000011590	tnrc6c2	53	79.003	Poecilia_formosa
ENSSDUG00000020741	tnrc6c2	100	78.168	ENSPLAG00000006992	tnrc6c2	60	87.144	Poecilia_latipinna
ENSSDUG00000020741	tnrc6c2	100	84.578	ENSPMEG00000012946	tnrc6c2	93	84.821	Poecilia_mexicana
ENSSDUG00000020741	tnrc6c2	100	78.989	ENSPREG00000015823	tnrc6c2	100	79.530	Poecilia_reticulata
ENSSDUG00000020741	tnrc6c2	100	89.605	ENSPNYG00000002582	tnrc6c2	100	89.362	Pundamilia_nyererei
ENSSDUG00000020741	tnrc6c2	100	58.531	ENSPNAG00000026838	tnrc6c2	99	58.594	Pygocentrus_nattereri
ENSSDUG00000020741	tnrc6c2	100	90.182	ENSSMAG00000015145	tnrc6c2	100	90.000	Scophthalmus_maximus
ENSSDUG00000020741	tnrc6c2	100	99.450	ENSSLDG00000002077	tnrc6c2	100	99.450	Seriola_lalandi_dorsalis
ENSSDUG00000020741	tnrc6c2	100	92.340	ENSSPAG00000013052	tnrc6c2	87	92.644	Stegastes_partitus
ENSSDUG00000020741	tnrc6c2	92	85.886	ENSTNIG00000004178	tnrc6c2	89	86.871	Tetraodon_nigroviridis
ENSSDUG00000020741	tnrc6c2	55	86.214	ENSXCOG00000013252	tnrc6c2	100	79.536	Xiphophorus_couchianus
ENSSDUG00000020741	tnrc6c2	100	84.699	ENSXMAG00000006739	tnrc6c2	100	85.064	Xiphophorus_maculatus