EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000020756 (Gene tree)
Gene ID: 111217171
Gene Symbol: -
Alias: -
Full Name: RNA-binding protein 4-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 8975 bases
Position: chrBDQW01000040.1:4797273-4806247
Accession: 111217171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000028780	RRM_5	PF13893.6	1.3e-11	1	2
ENSSDUP00000028780	RRM_5	PF13893.6	1.3e-11	2	2
ENSSDUP00000028772	RRM_5	PF13893.6	1.5e-11	1	2
ENSSDUP00000028772	RRM_5	PF13893.6	1.5e-11	2	2
ENSSDUP00000028780	RRM_1	PF00076.22	3.3e-33	1	2
ENSSDUP00000028780	RRM_1	PF00076.22	3.3e-33	2	2
ENSSDUP00000028772	RRM_1	PF00076.22	3.8e-33	1	2
ENSSDUP00000028772	RRM_1	PF00076.22	3.8e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000029273	-	2426	-	ENSSDUP00000028780	521 (aa)	-	-
ENSSDUT00000029265	-	6270	XM_022738922	ENSSDUP00000028772	548 (aa)	XP_022594643	UPI000BBE2D12

Gene Model

Click here to download ENSSDUG00000020756's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000020756's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000020756	-	75	48.866	ENSSDUG00000007975	rbm14b	65	62.007

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000020756	-	99	92.419	ENSAPOG00000003380	-	99	91.516	Acanthochromis_polyacanthus
ENSSDUG00000020756	-	72	61.324	ENSAPOG00000021712	rbm14b	68	62.007	Acanthochromis_polyacanthus
ENSSDUG00000020756	-	71	62.007	ENSACIG00000000381	rbm14b	65	62.007	Amphilophus_citrinellus
ENSSDUG00000020756	-	99	91.289	ENSACIG00000021173	-	99	90.563	Amphilophus_citrinellus
ENSSDUG00000020756	-	99	92.557	ENSAOCG00000001659	-	100	90.614	Amphiprion_ocellaris
ENSSDUG00000020756	-	72	61.754	ENSAOCG00000008941	rbm14b	82	55.446	Amphiprion_ocellaris
ENSSDUG00000020756	-	99	92.740	ENSAPEG00000016988	-	99	91.833	Amphiprion_percula
ENSSDUG00000020756	-	69	56.233	ENSAPEG00000003161	rbm14b	82	54.613	Amphiprion_percula
ENSSDUG00000020756	-	100	89.943	ENSATEG00000009700	-	94	90.000	Anabas_testudineus
ENSSDUG00000020756	-	69	58.268	ENSATEG00000003034	rbm14b	78	57.037	Anabas_testudineus
ENSSDUG00000020756	-	100	91.532	ENSACLG00000009112	-	97	90.991	Astatotilapia_calliptera
ENSSDUG00000020756	-	75	47.934	ENSACLG00000014355	rbm14b	64	62.007	Astatotilapia_calliptera
ENSSDUG00000020756	-	74	62.626	ENSAMXG00000007233	rbm14a	82	62.626	Astyanax_mexicanus
ENSSDUG00000020756	-	70	48.673	ENSAMXG00000031225	rbm14b	67	60.870	Astyanax_mexicanus
ENSSDUG00000020756	-	100	85.560	ENSCSEG00000019690	-	100	84.296	Cynoglossus_semilaevis
ENSSDUG00000020756	-	70	53.477	ENSCSEG00000000357	rbm14b	80	52.381	Cynoglossus_semilaevis
ENSSDUG00000020756	-	75	48.750	ENSCVAG00000013776	rbm14b	66	62.366	Cyprinodon_variegatus
ENSSDUG00000020756	-	100	85.125	ENSCVAG00000014858	-	100	84.767	Cyprinodon_variegatus
ENSSDUG00000020756	-	69	60.289	ENSDARG00000103834	rbm14b	64	61.011	Danio_rerio
ENSSDUG00000020756	-	74	61.069	ENSDARG00000012723	rbm14a	80	60.714	Danio_rerio
ENSSDUG00000020756	-	69	62.774	ENSELUG00000004690	rbm14b	70	62.774	Esox_lucius
ENSSDUG00000020756	-	86	57.570	ENSELUG00000023633	rbm14a	95	57.480	Esox_lucius
ENSSDUG00000020756	-	100	83.178	ENSFHEG00000020913	-	96	84.600	Fundulus_heteroclitus
ENSSDUG00000020756	-	75	50.104	ENSFHEG00000021265	rbm14b	83	49.688	Fundulus_heteroclitus
ENSSDUG00000020756	-	73	79.534	ENSGMOG00000010840	-	78	79.534	Gadus_morhua
ENSSDUG00000020756	-	100	85.066	ENSGAFG00000004455	-	99	83.273	Gambusia_affinis
ENSSDUG00000020756	-	75	48.340	ENSGAFG00000001924	rbm14b	66	61.649	Gambusia_affinis
ENSSDUG00000020756	-	89	88.793	ENSGACG00000020440	-	95	88.578	Gasterosteus_aculeatus
ENSSDUG00000020756	-	100	91.532	ENSHBUG00000003665	-	97	90.991	Haplochromis_burtoni
ENSSDUG00000020756	-	75	48.760	ENSHBUG00000016754	rbm14b	64	62.007	Haplochromis_burtoni
ENSSDUG00000020756	-	80	53.364	ENSHCOG00000012571	rbm14b	99	66.038	Hippocampus_comes
ENSSDUG00000020756	-	100	78.664	ENSHCOG00000004071	-	96	78.530	Hippocampus_comes
ENSSDUG00000020756	-	70	61.039	ENSIPUG00000009089	rbm14b	86	48.739	Ictalurus_punctatus
ENSSDUG00000020756	-	74	56.901	ENSIPUG00000021256	rbm14a	83	56.796	Ictalurus_punctatus
ENSSDUG00000020756	-	99	86.424	ENSKMAG00000008514	-	96	86.627	Kryptolebias_marmoratus
ENSSDUG00000020756	-	53	60.839	ENSKMAG00000020444	rbm14b	65	61.649	Kryptolebias_marmoratus
ENSSDUG00000020756	-	51	61.786	ENSLBEG00000027934	rbm14b	60	61.786	Labrus_bergylta
ENSSDUG00000020756	-	100	88.587	ENSLBEG00000001217	-	100	86.847	Labrus_bergylta
ENSSDUG00000020756	-	75	48.233	ENSMAMG00000014394	rbm14b	61	61.905	Mastacembelus_armatus
ENSSDUG00000020756	-	100	89.910	ENSMAMG00000021313	-	100	89.189	Mastacembelus_armatus
ENSSDUG00000020756	-	100	91.532	ENSMZEG00005001201	-	100	90.991	Maylandia_zebra
ENSSDUG00000020756	-	75	47.934	ENSMZEG00005020834	rbm14b	65	62.007	Maylandia_zebra
ENSSDUG00000020756	-	99	85.138	ENSMMOG00000014501	-	99	85.766	Mola_mola
ENSSDUG00000020756	-	51	56.786	ENSMMOG00000012912	rbm14b	69	56.786	Mola_mola
ENSSDUG00000020756	-	69	56.053	ENSMALG00000015445	rbm14b	84	56.234	Monopterus_albus
ENSSDUG00000020756	-	99	91.501	ENSNBRG00000004960	-	99	90.597	Neolamprologus_brichardi
ENSSDUG00000020756	-	75	48.760	ENSNBRG00000003378	rbm14b	65	62.007	Neolamprologus_brichardi
ENSSDUG00000020756	-	69	57.480	ENSONIG00000013035	rbm14b	82	57.037	Oreochromis_niloticus
ENSSDUG00000020756	-	89	90.042	ENSONIG00000008557	-	95	89.831	Oreochromis_niloticus
ENSSDUG00000020756	-	100	84.865	ENSORLG00000001900	-	99	83.513	Oryzias_latipes
ENSSDUG00000020756	-	75	48.441	ENSORLG00000008051	rbm14b	82	45.695	Oryzias_latipes
ENSSDUG00000020756	-	75	48.125	ENSORLG00020005551	rbm14b	82	45.354	Oryzias_latipes_hni
ENSSDUG00000020756	-	100	84.865	ENSORLG00020019144	-	99	83.513	Oryzias_latipes_hni
ENSSDUG00000020756	-	100	84.865	ENSORLG00015000082	-	100	85.045	Oryzias_latipes_hsok
ENSSDUG00000020756	-	75	48.233	ENSORLG00015022683	rbm14b	82	45.475	Oryzias_latipes_hsok
ENSSDUG00000020756	-	73	54.660	ENSOMEG00000000910	rbm14b	78	56.110	Oryzias_melastigma
ENSSDUG00000020756	-	80	88.393	ENSOMEG00000006508	-	96	94.000	Oryzias_melastigma
ENSSDUG00000020756	-	74	51.634	ENSPKIG00000009078	rbm14b	85	49.244	Paramormyrops_kingsleyae
ENSSDUG00000020756	-	81	79.433	ENSPMGG00000018869	-	93	87.162	Periophthalmus_magnuspinnatus
ENSSDUG00000020756	-	75	48.654	ENSPMGG00000013064	rbm14b	67	61.786	Periophthalmus_magnuspinnatus
ENSSDUG00000020756	-	75	48.133	ENSPFOG00000003614	rbm14b	66	62.007	Poecilia_formosa
ENSSDUG00000020756	-	100	85.094	ENSPFOG00000004843	-	96	86.220	Poecilia_formosa
ENSSDUG00000020756	-	100	85.094	ENSPLAG00000017359	-	96	86.220	Poecilia_latipinna
ENSSDUG00000020756	-	75	47.303	ENSPLAG00000001395	rbm14b	66	61.649	Poecilia_latipinna
ENSSDUG00000020756	-	75	47.925	ENSPMEG00000012911	rbm14b	66	62.007	Poecilia_mexicana
ENSSDUG00000020756	-	100	85.817	ENSPMEG00000004894	-	100	85.099	Poecilia_mexicana
ENSSDUG00000020756	-	100	84.717	ENSPREG00000007274	-	96	85.827	Poecilia_reticulata
ENSSDUG00000020756	-	75	47.510	ENSPREG00000003013	rbm14b	66	62.007	Poecilia_reticulata
ENSSDUG00000020756	-	75	48.967	ENSPNYG00000023605	rbm14b	65	62.007	Pundamilia_nyererei
ENSSDUG00000020756	-	100	91.532	ENSPNYG00000015906	-	100	90.991	Pundamilia_nyererei
ENSSDUG00000020756	-	68	60.410	ENSPNAG00000001977	rbm14b	65	61.232	Pygocentrus_nattereri
ENSSDUG00000020756	-	74	59.518	ENSPNAG00000012473	rbm14a	84	59.759	Pygocentrus_nattereri
ENSSDUG00000020756	-	74	51.204	ENSSFOG00015023796	rbm14b	84	49.892	Scleropages_formosus
ENSSDUG00000020756	-	100	92.896	ENSSMAG00000002055	-	100	91.985	Scophthalmus_maximus
ENSSDUG00000020756	-	65	63.214	ENSSMAG00000004522	rbm14b	67	63.214	Scophthalmus_maximus
ENSSDUG00000020756	-	100	99.456	ENSSLDG00000006311	-	100	99.456	Seriola_lalandi_dorsalis
ENSSDUG00000020756	-	75	48.866	ENSSLDG00000006472	rbm14b	65	62.007	Seriola_lalandi_dorsalis
ENSSDUG00000020756	-	75	48.660	ENSSPAG00000004231	rbm14b	64	62.007	Stegastes_partitus
ENSSDUG00000020756	-	99	92.748	ENSSPAG00000010825	-	99	92.015	Stegastes_partitus
ENSSDUG00000020756	-	71	60.976	ENSTRUG00000005716	rbm14b	66	61.786	Takifugu_rubripes
ENSSDUG00000020756	-	100	80.266	ENSTRUG00000009504	-	91	80.078	Takifugu_rubripes
ENSSDUG00000020756	-	88	75.803	ENSTNIG00000000058	-	94	77.440	Tetraodon_nigroviridis
ENSSDUG00000020756	-	70	52.895	ENSTNIG00000006844	rbm14b	79	53.086	Tetraodon_nigroviridis
ENSSDUG00000020756	-	99	83.000	ENSXCOG00000006825	-	99	82.000	Xiphophorus_couchianus
ENSSDUG00000020756	-	75	47.925	ENSXMAG00000008390	rbm14b	66	61.649	Xiphophorus_maculatus
ENSSDUG00000020756	-	100	85.637	ENSXMAG00000000338	-	100	84.919	Xiphophorus_maculatus