EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000021063 (Gene tree)
Gene ID: 111217563
Gene Symbol: raver1
Alias: zgc:112236
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 10356 bases
Position: chrBDQW01000044.1:2484612-2494967
Accession: 111217563
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000029224	RRM_1	PF00076.22	2.1e-30	1	2
ENSSDUP00000029224	RRM_1	PF00076.22	2.1e-30	2	2
ENSSDUP00000029278	RRM_1	PF00076.22	2.1e-30	1	2
ENSSDUP00000029278	RRM_1	PF00076.22	2.1e-30	2	2
ENSSDUP00000029252	RRM_1	PF00076.22	2.4e-30	1	2
ENSSDUP00000029252	RRM_1	PF00076.22	2.4e-30	2	2
ENSSDUP00000029231	RRM_1	PF00076.22	2.7e-30	1	2
ENSSDUP00000029231	RRM_1	PF00076.22	2.7e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000029719	-	2554	-	ENSSDUP00000029224	711 (aa)	-	-
ENSSDUT00000029726	-	3060	XM_022739492	ENSSDUP00000029231	757 (aa)	XP_022595213	UPI000BBEFF7F
ENSSDUT00000029745	-	2988	XM_022739494	ENSSDUP00000029252	733 (aa)	XP_022595215	UPI000BBEBAAB
ENSSDUT00000029772	-	2925	XM_022739495	ENSSDUP00000029278	712 (aa)	XP_022595216	-

Gene Model

Click here to download ENSSDUG00000021063's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021063's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000021063	raver1	74	47.600	ENSSDUG00000013065	raver2	77	43.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021063	raver1	92	52.239	ENSG00000161847	RAVER1	97	52.044	Homo_sapiens
ENSSDUG00000021063	raver1	98	90.795	ENSAPOG00000017267	raver1	90	90.795	Acanthochromis_polyacanthus
ENSSDUG00000021063	raver1	78	82.000	ENSAMEG00000011738	RAVER1	94	46.909	Ailuropoda_melanoleuca
ENSSDUG00000021063	raver1	98	92.458	ENSAOCG00000005128	raver1	95	92.458	Amphiprion_ocellaris
ENSSDUG00000021063	raver1	98	92.372	ENSAPEG00000010854	raver1	98	92.372	Amphiprion_percula
ENSSDUG00000021063	raver1	100	91.405	ENSATEG00000021004	raver1	100	91.405	Anabas_testudineus
ENSSDUG00000021063	raver1	84	49.445	ENSACAG00000008386	-	74	56.582	Anolis_carolinensis
ENSSDUG00000021063	raver1	79	82.000	ENSANAG00000028226	RAVER1	77	60.156	Aotus_nancymaae
ENSSDUG00000021063	raver1	100	87.193	ENSACLG00000018492	raver1	94	87.414	Astatotilapia_calliptera
ENSSDUG00000021063	raver1	98	69.098	ENSAMXG00000005132	raver1	99	67.806	Astyanax_mexicanus
ENSSDUG00000021063	raver1	75	82.000	ENSBTAG00000015721	RAVER1	97	52.461	Bos_taurus
ENSSDUG00000021063	raver1	79	82.000	ENSCJAG00000005671	RAVER1	95	52.174	Callithrix_jacchus
ENSSDUG00000021063	raver1	94	51.604	ENSCAFG00000017861	RAVER1	96	51.370	Canis_familiaris
ENSSDUG00000021063	raver1	94	51.604	ENSCAFG00020024449	RAVER1	98	51.370	Canis_lupus_dingo
ENSSDUG00000021063	raver1	85	55.307	ENSCHIG00000006718	RAVER1	81	56.298	Capra_hircus
ENSSDUG00000021063	raver1	62	63.896	ENSTSYG00000027107	RAVER1	67	68.144	Carlito_syrichta
ENSSDUG00000021063	raver1	73	82.000	ENSCAPG00000002269	RAVER1	79	60.938	Cavia_aperea
ENSSDUG00000021063	raver1	80	82.000	ENSCPOG00000001008	RAVER1	98	49.468	Cavia_porcellus
ENSSDUG00000021063	raver1	79	82.000	ENSCCAG00000031723	RAVER1	73	78.571	Cebus_capucinus
ENSSDUG00000021063	raver1	79	83.333	ENSCATG00000043863	RAVER1	95	49.264	Cercocebus_atys
ENSSDUG00000021063	raver1	80	82.000	ENSCLAG00000009336	RAVER1	82	56.792	Chinchilla_lanigera
ENSSDUG00000021063	raver1	78	82.000	ENSCSAG00000007317	RAVER1	80	49.326	Chlorocebus_sabaeus
ENSSDUG00000021063	raver1	95	53.826	ENSCPBG00000005349	-	99	52.021	Chrysemys_picta_bellii
ENSSDUG00000021063	raver1	79	83.333	ENSCANG00000008337	RAVER1	95	49.264	Colobus_angolensis_palliatus
ENSSDUG00000021063	raver1	84	55.094	ENSCGRG00001013260	-	82	54.917	Cricetulus_griseus_chok1gshd
ENSSDUG00000021063	raver1	84	55.094	ENSCGRG00000015138	-	82	54.917	Cricetulus_griseus_crigri
ENSSDUG00000021063	raver1	98	79.808	ENSCSEG00000021092	raver1	98	79.808	Cynoglossus_semilaevis
ENSSDUG00000021063	raver1	100	82.041	ENSCVAG00000013971	raver1	98	82.548	Cyprinodon_variegatus
ENSSDUG00000021063	raver1	98	71.369	ENSDARG00000052617	raver1	98	70.124	Danio_rerio
ENSSDUG00000021063	raver1	53	84.000	ENSDNOG00000035742	-	59	60.983	Dasypus_novemcinctus
ENSSDUG00000021063	raver1	93	47.306	ENSDORG00000010106	-	98	47.568	Dipodomys_ordii
ENSSDUG00000021063	raver1	55	48.101	ENSETEG00000008201	-	67	51.213	Echinops_telfairi
ENSSDUG00000021063	raver1	54	67.188	ENSEASG00005010544	-	71	66.838	Equus_asinus_asinus
ENSSDUG00000021063	raver1	78	82.000	ENSECAG00000024966	RAVER1	76	60.040	Equus_caballus
ENSSDUG00000021063	raver1	100	78.261	ENSELUG00000023287	raver1	100	77.105	Esox_lucius
ENSSDUG00000021063	raver1	78	82.000	ENSFCAG00000009435	RAVER1	76	59.524	Felis_catus
ENSSDUG00000021063	raver1	78	82.000	ENSFDAG00000015113	RAVER1	98	51.467	Fukomys_damarensis
ENSSDUG00000021063	raver1	94	73.174	ENSGMOG00000003649	raver1	99	73.876	Gadus_morhua
ENSSDUG00000021063	raver1	71	38.356	ENSGALG00000050608	-	51	39.592	Gallus_gallus
ENSSDUG00000021063	raver1	100	83.152	ENSGAFG00000015944	raver1	98	83.679	Gambusia_affinis
ENSSDUG00000021063	raver1	95	76.158	ENSGACG00000013818	raver1	100	78.610	Gasterosteus_aculeatus
ENSSDUG00000021063	raver1	80	70.430	ENSGAGG00000011748	-	99	67.677	Gopherus_agassizii
ENSSDUG00000021063	raver1	92	52.103	ENSGGOG00000006015	RAVER1	95	51.907	Gorilla_gorilla
ENSSDUG00000021063	raver1	99	87.106	ENSHBUG00000021210	raver1	93	87.326	Haplochromis_burtoni
ENSSDUG00000021063	raver1	91	51.897	ENSHGLG00000015460	RAVER1	79	60.714	Heterocephalus_glaber_female
ENSSDUG00000021063	raver1	91	51.897	ENSHGLG00100000812	RAVER1	79	60.714	Heterocephalus_glaber_male
ENSSDUG00000021063	raver1	100	78.912	ENSHCOG00000000449	raver1	96	78.867	Hippocampus_comes
ENSSDUG00000021063	raver1	98	70.637	ENSIPUG00000013153	raver1	98	71.330	Ictalurus_punctatus
ENSSDUG00000021063	raver1	91	51.691	ENSSTOG00000003241	RAVER1	96	49.051	Ictidomys_tridecemlineatus
ENSSDUG00000021063	raver1	91	51.220	ENSJJAG00000018219	-	98	50.000	Jaculus_jaculus
ENSSDUG00000021063	raver1	100	85.286	ENSKMAG00000017355	raver1	98	85.477	Kryptolebias_marmoratus
ENSSDUG00000021063	raver1	99	87.749	ENSLBEG00000008268	raver1	94	90.390	Labrus_bergylta
ENSSDUG00000021063	raver1	84	55.711	ENSLACG00000005809	-	88	54.400	Latimeria_chalumnae
ENSSDUG00000021063	raver1	96	63.046	ENSLOCG00000007500	raver1	96	63.067	Lepisosteus_oculatus
ENSSDUG00000021063	raver1	92	51.714	ENSLAFG00000003664	-	99	51.429	Loxodonta_africana
ENSSDUG00000021063	raver1	71	57.582	ENSMFAG00000037977	RAVER1	94	52.276	Macaca_fascicularis
ENSSDUG00000021063	raver1	78	82.000	ENSMMUG00000014897	RAVER1	94	49.326	Macaca_mulatta
ENSSDUG00000021063	raver1	78	83.333	ENSMNEG00000028390	RAVER1	94	49.326	Macaca_nemestrina
ENSSDUG00000021063	raver1	79	83.333	ENSMLEG00000041959	RAVER1	95	49.398	Mandrillus_leucophaeus
ENSSDUG00000021063	raver1	100	90.587	ENSMAMG00000012059	raver1	98	90.582	Mastacembelus_armatus
ENSSDUG00000021063	raver1	100	87.193	ENSMZEG00005019002	raver1	98	87.414	Maylandia_zebra
ENSSDUG00000021063	raver1	84	55.577	ENSMAUG00000017948	-	82	54.664	Mesocricetus_auratus
ENSSDUG00000021063	raver1	92	52.707	ENSMICG00000010326	RAVER1	97	52.186	Microcebus_murinus
ENSSDUG00000021063	raver1	83	56.522	ENSMOCG00000015553	-	82	55.473	Microtus_ochrogaster
ENSSDUG00000021063	raver1	98	89.058	ENSMMOG00000012093	raver1	100	88.404	Mola_mola
ENSSDUG00000021063	raver1	90	50.358	ENSMODG00000005584	-	88	50.653	Monodelphis_domestica
ENSSDUG00000021063	raver1	100	86.512	ENSMALG00000016569	raver1	99	88.382	Monopterus_albus
ENSSDUG00000021063	raver1	87	54.463	MGP_CAROLIEiJ_G0031860	-	98	50.660	Mus_caroli
ENSSDUG00000021063	raver1	84	55.492	ENSMUSG00000010205	Raver1	98	50.660	Mus_musculus
ENSSDUG00000021063	raver1	84	55.367	MGP_PahariEiJ_G0014726	-	98	50.393	Mus_pahari
ENSSDUG00000021063	raver1	84	55.303	MGP_SPRETEiJ_G0032984	-	98	50.528	Mus_spretus
ENSSDUG00000021063	raver1	78	82.000	ENSMPUG00000006712	RAVER1	77	59.684	Mustela_putorius_furo
ENSSDUG00000021063	raver1	78	82.000	ENSMLUG00000012328	RAVER1	96	51.867	Myotis_lucifugus
ENSSDUG00000021063	raver1	83	55.435	ENSNGAG00000001260	-	83	54.221	Nannospalax_galili
ENSSDUG00000021063	raver1	100	78.610	ENSNBRG00000010139	raver1	98	78.008	Neolamprologus_brichardi
ENSSDUG00000021063	raver1	92	51.429	ENSNLEG00000012181	RAVER1	95	51.837	Nomascus_leucogenys
ENSSDUG00000021063	raver1	73	84.906	ENSMEUG00000003281	-	79	67.105	Notamacropus_eugenii
ENSSDUG00000021063	raver1	80	82.000	ENSODEG00000016260	RAVER1	98	47.678	Octodon_degus
ENSSDUG00000021063	raver1	92	85.044	ENSONIG00000001559	raver1	100	85.044	Oreochromis_niloticus
ENSSDUG00000021063	raver1	82	61.039	ENSOCUG00000020918	RAVER1	97	50.487	Oryctolagus_cuniculus
ENSSDUG00000021063	raver1	100	82.401	ENSORLG00000005458	raver1	98	82.548	Oryzias_latipes
ENSSDUG00000021063	raver1	100	82.674	ENSORLG00020004392	raver1	98	82.825	Oryzias_latipes_hni
ENSSDUG00000021063	raver1	100	83.083	ENSORLG00015017222	raver1	98	83.241	Oryzias_latipes_hsok
ENSSDUG00000021063	raver1	100	83.333	ENSOMEG00000023956	raver1	98	94.340	Oryzias_melastigma
ENSSDUG00000021063	raver1	80	75.439	ENSOGAG00000011071	RAVER1	74	75.439	Otolemur_garnettii
ENSSDUG00000021063	raver1	79	82.000	ENSOARG00000015886	RAVER1	73	82.000	Ovis_aries
ENSSDUG00000021063	raver1	92	52.239	ENSPPAG00000002611	RAVER1	95	52.044	Pan_paniscus
ENSSDUG00000021063	raver1	78	82.000	ENSPPRG00000009912	RAVER1	76	59.524	Panthera_pardus
ENSSDUG00000021063	raver1	92	52.239	ENSPTRG00000010466	RAVER1	95	52.044	Pan_troglodytes
ENSSDUG00000021063	raver1	72	57.414	ENSPANG00000004122	RAVER1	95	51.907	Papio_anubis
ENSSDUG00000021063	raver1	84	55.094	ENSPEMG00000016411	-	82	54.917	Peromyscus_maniculatus_bairdii
ENSSDUG00000021063	raver1	93	53.210	ENSPCIG00000018695	-	98	52.149	Phascolarctos_cinereus
ENSSDUG00000021063	raver1	100	81.579	ENSPFOG00000007016	raver1	98	82.062	Poecilia_formosa
ENSSDUG00000021063	raver1	100	79.132	ENSPLAG00000020793	raver1	97	81.778	Poecilia_latipinna
ENSSDUG00000021063	raver1	100	83.152	ENSPMEG00000011220	raver1	98	83.679	Poecilia_mexicana
ENSSDUG00000021063	raver1	100	77.959	ENSPREG00000006864	raver1	98	78.393	Poecilia_reticulata
ENSSDUG00000021063	raver1	80	75.439	ENSPPYG00000010514	RAVER1	81	52.198	Pongo_abelii
ENSSDUG00000021063	raver1	79	82.000	ENSPCOG00000026605	RAVER1	77	59.136	Propithecus_coquereli
ENSSDUG00000021063	raver1	78	82.000	ENSPVAG00000003689	RAVER1	76	75.439	Pteropus_vampyrus
ENSSDUG00000021063	raver1	100	81.335	ENSPNYG00000013284	raver1	98	80.913	Pundamilia_nyererei
ENSSDUG00000021063	raver1	98	72.367	ENSPNAG00000015476	raver1	98	71.585	Pygocentrus_nattereri
ENSSDUG00000021063	raver1	92	49.349	ENSRNOG00000020710	Raver1	98	50.863	Rattus_norvegicus
ENSSDUG00000021063	raver1	79	83.333	ENSRBIG00000034702	RAVER1	71	83.333	Rhinopithecus_bieti
ENSSDUG00000021063	raver1	79	83.333	ENSRROG00000031186	RAVER1	95	52.941	Rhinopithecus_roxellana
ENSSDUG00000021063	raver1	92	53.039	ENSSBOG00000023423	RAVER1	95	53.482	Saimiri_boliviensis_boliviensis
ENSSDUG00000021063	raver1	85	52.527	ENSSHAG00000008181	-	90	51.772	Sarcophilus_harrisii
ENSSDUG00000021063	raver1	98	92.265	ENSSMAG00000004546	raver1	100	92.245	Scophthalmus_maximus
ENSSDUG00000021063	raver1	100	99.454	ENSSLDG00000014505	raver1	100	99.454	Seriola_lalandi_dorsalis
ENSSDUG00000021063	raver1	98	92.244	ENSSPAG00000000688	raver1	100	92.224	Stegastes_partitus
ENSSDUG00000021063	raver1	75	75.439	ENSSSCG00000013650	-	79	75.439	Sus_scrofa
ENSSDUG00000021063	raver1	98	82.873	ENSTRUG00000025641	raver1	98	82.044	Takifugu_rubripes
ENSSDUG00000021063	raver1	79	82.000	ENSTTRG00000009552	RAVER1	97	48.413	Tursiops_truncatus
ENSSDUG00000021063	raver1	78	82.000	ENSUAMG00000020385	RAVER1	94	47.849	Ursus_americanus
ENSSDUG00000021063	raver1	94	51.604	ENSVVUG00000028976	RAVER1	96	51.370	Vulpes_vulpes
ENSSDUG00000021063	raver1	90	52.624	ENSXETG00000011622	raver1	94	50.367	Xenopus_tropicalis
ENSSDUG00000021063	raver1	100	84.103	ENSXCOG00000016368	raver1	98	84.647	Xiphophorus_couchianus
ENSSDUG00000021063	raver1	100	84.103	ENSXMAG00000000217	raver1	98	84.647	Xiphophorus_maculatus