EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000021082 (Gene tree)
Gene ID: 111221958
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 9877 bases
Position: chrBDQW01000088.1:8292343-8302219
Accession: 111221958
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000029249	RRM_1	PF00076.22	3.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000029744	RBM38-201	2092	XM_022745560	ENSSDUP00000029249	244 (aa)	XP_022601281	UPI000BBED84B

Gene Model

Click here to download ENSSDUG00000021082's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021082's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000021082	RBM38	56	79.562	ENSSDUG00000010760	rbm24a	100	59.919
ENSSDUG00000021082	RBM38	100	67.059	ENSSDUG00000022611	rbm38	98	66.667
ENSSDUG00000021082	RBM38	60	75.817	ENSSDUG00000005955	rbm24b	100	61.538

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021082	RBM38	92	66.524	ENSG00000132819	RBM38	94	86.441	Homo_sapiens
ENSSDUG00000021082	RBM38	100	65.490	ENSAPOG00000003301	rbm38	98	65.079	Acanthochromis_polyacanthus
ENSSDUG00000021082	RBM38	100	97.131	ENSAPOG00000009939	-	100	97.131	Acanthochromis_polyacanthus
ENSSDUG00000021082	RBM38	100	65.098	ENSACIG00000000010	rbm38	98	64.683	Amphilophus_citrinellus
ENSSDUG00000021082	RBM38	100	94.262	ENSACIG00000012502	-	100	97.458	Amphilophus_citrinellus
ENSSDUG00000021082	RBM38	100	65.490	ENSAOCG00000013497	-	98	65.079	Amphiprion_ocellaris
ENSSDUG00000021082	RBM38	97	96.624	ENSAOCG00000012559	RBM38	100	96.624	Amphiprion_ocellaris
ENSSDUG00000021082	RBM38	100	65.490	ENSAPEG00000013137	rbm38	98	65.079	Amphiprion_percula
ENSSDUG00000021082	RBM38	100	96.311	ENSAPEG00000023581	-	100	96.311	Amphiprion_percula
ENSSDUG00000021082	RBM38	100	63.672	ENSATEG00000016366	rbm38	98	63.241	Anabas_testudineus
ENSSDUG00000021082	RBM38	100	96.721	ENSATEG00000016710	-	100	96.721	Anabas_testudineus
ENSSDUG00000021082	RBM38	95	68.085	ENSACAG00000016238	RBM38	90	66.809	Anolis_carolinensis
ENSSDUG00000021082	RBM38	92	66.524	ENSANAG00000031959	RBM38	78	93.617	Aotus_nancymaae
ENSSDUG00000021082	RBM38	100	91.803	ENSACLG00000019514	-	100	91.803	Astatotilapia_calliptera
ENSSDUG00000021082	RBM38	100	79.098	ENSAMXG00000015601	-	100	77.049	Astyanax_mexicanus
ENSSDUG00000021082	RBM38	96	65.385	ENSAMXG00000038120	rbm38	97	62.821	Astyanax_mexicanus
ENSSDUG00000021082	RBM38	92	65.948	ENSBTAG00000008105	RBM38	89	65.517	Bos_taurus
ENSSDUG00000021082	RBM38	92	67.382	ENSCJAG00000019139	RBM38	78	93.617	Callithrix_jacchus
ENSSDUG00000021082	RBM38	92	67.672	ENSCAFG00020021943	RBM38	89	67.241	Canis_lupus_dingo
ENSSDUG00000021082	RBM38	92	64.935	ENSCHIG00000002609	RBM38	89	64.069	Capra_hircus
ENSSDUG00000021082	RBM38	92	66.524	ENSCPOG00000012781	RBM38	89	66.094	Cavia_porcellus
ENSSDUG00000021082	RBM38	92	67.382	ENSCCAG00000036872	RBM38	78	93.617	Cebus_capucinus
ENSSDUG00000021082	RBM38	92	66.667	ENSCATG00000032133	RBM38	78	93.617	Cercocebus_atys
ENSSDUG00000021082	RBM38	92	65.236	ENSCLAG00000005906	RBM38	92	64.807	Chinchilla_lanigera
ENSSDUG00000021082	RBM38	92	66.667	ENSCSAG00000015503	RBM38	89	65.368	Chlorocebus_sabaeus
ENSSDUG00000021082	RBM38	93	67.382	ENSCPBG00000024059	RBM38	99	67.391	Chrysemys_picta_bellii
ENSSDUG00000021082	RBM38	60	61.538	ENSCING00000025102	-	76	56.742	Ciona_intestinalis
ENSSDUG00000021082	RBM38	61	63.057	ENSCSAVG00000001132	-	58	63.057	Ciona_savignyi
ENSSDUG00000021082	RBM38	95	51.477	ENSCANG00000030105	-	80	49.362	Colobus_angolensis_palliatus
ENSSDUG00000021082	RBM38	72	73.626	ENSCGRG00001012928	Rbm38	89	64.224	Cricetulus_griseus_chok1gshd
ENSSDUG00000021082	RBM38	100	90.574	ENSCSEG00000004701	-	100	90.574	Cynoglossus_semilaevis
ENSSDUG00000021082	RBM38	80	61.111	ENSCSEG00000020943	rbm38	60	66.851	Cynoglossus_semilaevis
ENSSDUG00000021082	RBM38	100	89.344	ENSCVAG00000005472	-	100	89.344	Cyprinodon_variegatus
ENSSDUG00000021082	RBM38	99	61.446	ENSCVAG00000015952	rbm38	98	61.111	Cyprinodon_variegatus
ENSSDUG00000021082	RBM38	99	72.428	ENSDARG00000058818	rbm38	82	82.564	Danio_rerio
ENSSDUG00000021082	RBM38	92	66.087	ENSDNOG00000032004	RBM38	98	65.502	Dasypus_novemcinctus
ENSSDUG00000021082	RBM38	92	65.948	ENSECAG00000007700	RBM38	89	65.517	Equus_caballus
ENSSDUG00000021082	RBM38	92	64.957	ENSEEUG00000013489	RBM38	92	63.265	Erinaceus_europaeus
ENSSDUG00000021082	RBM38	100	82.329	ENSELUG00000005849	-	100	81.928	Esox_lucius
ENSSDUG00000021082	RBM38	90	68.142	ENSELUG00000000585	-	98	65.333	Esox_lucius
ENSSDUG00000021082	RBM38	92	66.234	ENSFCAG00000042916	RBM38	82	88.119	Felis_catus
ENSSDUG00000021082	RBM38	69	76.744	ENSFALG00000010805	RBM38	88	76.744	Ficedula_albicollis
ENSSDUG00000021082	RBM38	100	62.302	ENSFHEG00000017748	rbm38	98	61.508	Fundulus_heteroclitus
ENSSDUG00000021082	RBM38	100	85.081	ENSFHEG00000006160	-	100	85.887	Fundulus_heteroclitus
ENSSDUG00000021082	RBM38	75	88.108	ENSGMOG00000016655	-	99	88.108	Gadus_morhua
ENSSDUG00000021082	RBM38	93	67.241	ENSGALG00000026081	RBM38	99	67.672	Gallus_gallus
ENSSDUG00000021082	RBM38	94	85.652	ENSGACG00000009873	-	100	85.652	Gasterosteus_aculeatus
ENSSDUG00000021082	RBM38	95	66.379	ENSGACG00000015224	rbm38	100	66.379	Gasterosteus_aculeatus
ENSSDUG00000021082	RBM38	93	67.811	ENSGAGG00000001187	RBM38	99	67.826	Gopherus_agassizii
ENSSDUG00000021082	RBM38	100	65.490	ENSHBUG00000012058	rbm38	98	64.683	Haplochromis_burtoni
ENSSDUG00000021082	RBM38	100	91.803	ENSHBUG00000011778	-	100	91.803	Haplochromis_burtoni
ENSSDUG00000021082	RBM38	92	62.931	ENSHGLG00000015077	RBM38	89	65.236	Heterocephalus_glaber_female
ENSSDUG00000021082	RBM38	84	90.777	ENSHCOG00000005622	-	57	91.919	Hippocampus_comes
ENSSDUG00000021082	RBM38	89	51.477	ENSHCOG00000019040	rbm38	78	56.122	Hippocampus_comes
ENSSDUG00000021082	RBM38	100	73.279	ENSIPUG00000019349	-	100	72.470	Ictalurus_punctatus
ENSSDUG00000021082	RBM38	92	60.086	ENSKMAG00000012402	rbm38	98	60.086	Kryptolebias_marmoratus
ENSSDUG00000021082	RBM38	100	91.532	ENSLBEG00000016163	RBM38	100	91.532	Labrus_bergylta
ENSSDUG00000021082	RBM38	100	65.098	ENSLBEG00000018878	rbm38	98	64.286	Labrus_bergylta
ENSSDUG00000021082	RBM38	100	75.410	ENSLOCG00000003456	rbm38	100	75.000	Lepisosteus_oculatus
ENSSDUG00000021082	RBM38	92	66.667	ENSMFAG00000043808	RBM38	78	93.617	Macaca_fascicularis
ENSSDUG00000021082	RBM38	92	66.667	ENSMMUG00000031391	RBM38	78	93.617	Macaca_mulatta
ENSSDUG00000021082	RBM38	92	66.667	ENSMNEG00000034683	RBM38	78	93.617	Macaca_nemestrina
ENSSDUG00000021082	RBM38	100	95.082	ENSMAMG00000020499	RBM38	100	95.082	Mastacembelus_armatus
ENSSDUG00000021082	RBM38	100	67.059	ENSMAMG00000024135	rbm38	98	65.476	Mastacembelus_armatus
ENSSDUG00000021082	RBM38	100	65.490	ENSMZEG00005026036	rbm38	98	64.683	Maylandia_zebra
ENSSDUG00000021082	RBM38	100	91.803	ENSMZEG00005000849	-	100	91.803	Maylandia_zebra
ENSSDUG00000021082	RBM38	92	65.086	ENSMAUG00000021211	Rbm38	89	65.948	Mesocricetus_auratus
ENSSDUG00000021082	RBM38	92	66.953	ENSMICG00000038011	RBM38	98	66.953	Microcebus_murinus
ENSSDUG00000021082	RBM38	92	64.655	ENSMOCG00000008715	Rbm38	94	63.525	Microtus_ochrogaster
ENSSDUG00000021082	RBM38	100	95.082	ENSMMOG00000020051	-	100	95.082	Mola_mola
ENSSDUG00000021082	RBM38	93	66.087	ENSMODG00000016458	RBM38	91	66.957	Monodelphis_domestica
ENSSDUG00000021082	RBM38	77	97.884	ENSMALG00000004680	RBM38	72	97.884	Monopterus_albus
ENSSDUG00000021082	RBM38	69	72.941	ENSMALG00000022327	rbm38	72	72.941	Monopterus_albus
ENSSDUG00000021082	RBM38	92	62.931	MGP_CAROLIEiJ_G0024745	Rbm38	94	63.265	Mus_caroli
ENSSDUG00000021082	RBM38	92	62.931	ENSMUSG00000027510	Rbm38	94	63.265	Mus_musculus
ENSSDUG00000021082	RBM38	92	62.931	MGP_PahariEiJ_G0026186	Rbm38	94	63.265	Mus_pahari
ENSSDUG00000021082	RBM38	92	62.931	MGP_SPRETEiJ_G0025665	Rbm38	94	63.265	Mus_spretus
ENSSDUG00000021082	RBM38	72	75.275	ENSMPUG00000006518	RBM38	89	75.275	Mustela_putorius_furo
ENSSDUG00000021082	RBM38	92	65.801	ENSMLUG00000011140	RBM38	98	64.935	Myotis_lucifugus
ENSSDUG00000021082	RBM38	100	92.213	ENSNBRG00000022545	-	100	92.213	Neolamprologus_brichardi
ENSSDUG00000021082	RBM38	100	65.882	ENSNBRG00000022685	rbm38	98	65.079	Neolamprologus_brichardi
ENSSDUG00000021082	RBM38	92	66.953	ENSODEG00000007980	RBM38	89	66.524	Octodon_degus
ENSSDUG00000021082	RBM38	99	92.181	ENSONIG00000020324	-	100	92.181	Oreochromis_niloticus
ENSSDUG00000021082	RBM38	99	65.748	ENSONIG00000017073	rbm38	100	64.940	Oreochromis_niloticus
ENSSDUG00000021082	RBM38	92	67.249	ENSOANG00000009259	RBM38	81	66.228	Ornithorhynchus_anatinus
ENSSDUG00000021082	RBM38	100	86.992	ENSORLG00000027180	-	100	88.211	Oryzias_latipes
ENSSDUG00000021082	RBM38	100	57.937	ENSORLG00000012154	rbm38	98	57.937	Oryzias_latipes
ENSSDUG00000021082	RBM38	100	59.608	ENSORLG00020017871	rbm38	98	58.730	Oryzias_latipes_hni
ENSSDUG00000021082	RBM38	100	86.992	ENSORLG00020020751	-	100	88.211	Oryzias_latipes_hni
ENSSDUG00000021082	RBM38	100	59.608	ENSORLG00015012606	rbm38	98	58.730	Oryzias_latipes_hsok
ENSSDUG00000021082	RBM38	100	88.980	ENSORLG00015017040	-	100	88.980	Oryzias_latipes_hsok
ENSSDUG00000021082	RBM38	100	91.393	ENSOMEG00000023912	-	100	91.393	Oryzias_melastigma
ENSSDUG00000021082	RBM38	99	61.265	ENSOMEG00000006805	rbm38	98	59.921	Oryzias_melastigma
ENSSDUG00000021082	RBM38	92	66.953	ENSOGAG00000029136	RBM38	88	66.524	Otolemur_garnettii
ENSSDUG00000021082	RBM38	92	66.234	ENSPPRG00000009507	RBM38	82	88.119	Panthera_pardus
ENSSDUG00000021082	RBM38	81	70.443	ENSPTRG00000013661	RBM38	81	90.000	Pan_troglodytes
ENSSDUG00000021082	RBM38	52	84.127	ENSPTRG00000045845	-	68	84.127	Pan_troglodytes
ENSSDUG00000021082	RBM38	92	66.667	ENSPANG00000020919	-	78	93.617	Papio_anubis
ENSSDUG00000021082	RBM38	93	54.274	ENSPANG00000033127	-	91	51.948	Papio_anubis
ENSSDUG00000021082	RBM38	100	72.470	ENSPKIG00000018122	-	95	90.991	Paramormyrops_kingsleyae
ENSSDUG00000021082	RBM38	100	70.683	ENSPKIG00000025417	rbm38	100	70.683	Paramormyrops_kingsleyae
ENSSDUG00000021082	RBM38	96	66.116	ENSPSIG00000011649	RBM38	94	66.109	Pelodiscus_sinensis
ENSSDUG00000021082	RBM38	99	63.600	ENSPMGG00000011343	rbm38	98	61.600	Periophthalmus_magnuspinnatus
ENSSDUG00000021082	RBM38	100	83.468	ENSPMGG00000017094	-	100	83.468	Periophthalmus_magnuspinnatus
ENSSDUG00000021082	RBM38	93	66.094	ENSPCIG00000013648	RBM38	91	66.522	Phascolarctos_cinereus
ENSSDUG00000021082	RBM38	100	59.843	ENSPFOG00000011658	rbm38	98	61.328	Poecilia_formosa
ENSSDUG00000021082	RBM38	100	88.211	ENSPLAG00000002500	-	100	86.179	Poecilia_latipinna
ENSSDUG00000021082	RBM38	100	60.000	ENSPLAG00000005218	rbm38	98	60.938	Poecilia_latipinna
ENSSDUG00000021082	RBM38	100	59.843	ENSPMEG00000015770	rbm38	98	61.328	Poecilia_mexicana
ENSSDUG00000021082	RBM38	100	59.843	ENSPREG00000007398	rbm38	98	61.328	Poecilia_reticulata
ENSSDUG00000021082	RBM38	92	66.524	ENSPCOG00000026201	RBM38	77	93.617	Propithecus_coquereli
ENSSDUG00000021082	RBM38	96	42.739	ENSPVAG00000006457	RBM38	66	85.484	Pteropus_vampyrus
ENSSDUG00000021082	RBM38	100	65.098	ENSPNYG00000021373	rbm38	98	64.286	Pundamilia_nyererei
ENSSDUG00000021082	RBM38	100	91.803	ENSPNYG00000019727	-	100	96.610	Pundamilia_nyererei
ENSSDUG00000021082	RBM38	96	71.915	ENSPNAG00000010596	rbm38	82	79.592	Pygocentrus_nattereri
ENSSDUG00000021082	RBM38	100	77.869	ENSPNAG00000015123	-	96	84.091	Pygocentrus_nattereri
ENSSDUG00000021082	RBM38	92	65.086	ENSRNOG00000006420	Rbm38	94	62.295	Rattus_norvegicus
ENSSDUG00000021082	RBM38	93	54.978	ENSRROG00000036388	-	88	52.838	Rhinopithecus_roxellana
ENSSDUG00000021082	RBM38	92	67.382	ENSSBOG00000031053	RBM38	92	90.000	Saimiri_boliviensis_boliviensis
ENSSDUG00000021082	RBM38	100	70.850	ENSSFOG00015004453	rbm38	100	73.279	Scleropages_formosus
ENSSDUG00000021082	RBM38	100	67.059	ENSSLDG00000010845	rbm38	98	66.667	Seriola_lalandi_dorsalis
ENSSDUG00000021082	RBM38	100	99.180	ENSSLDG00000011778	RBM38	100	99.180	Seriola_lalandi_dorsalis
ENSSDUG00000021082	RBM38	100	65.234	ENSSPAG00000011113	rbm38	98	64.822	Stegastes_partitus
ENSSDUG00000021082	RBM38	100	97.131	ENSSPAG00000020989	RBM38	100	97.131	Stegastes_partitus
ENSSDUG00000021082	RBM38	92	66.810	ENSSSCG00000007504	RBM38	89	66.379	Sus_scrofa
ENSSDUG00000021082	RBM38	100	88.980	ENSTRUG00000019869	-	100	88.980	Takifugu_rubripes
ENSSDUG00000021082	RBM38	98	64.634	ENSTRUG00000024954	rbm38	97	64.228	Takifugu_rubripes
ENSSDUG00000021082	RBM38	95	85.714	ENSTNIG00000007093	-	100	85.714	Tetraodon_nigroviridis
ENSSDUG00000021082	RBM38	92	66.810	ENSUAMG00000019780	RBM38	89	66.524	Ursus_americanus
ENSSDUG00000021082	RBM38	92	67.672	ENSVVUG00000017246	RBM38	89	67.241	Vulpes_vulpes
ENSSDUG00000021082	RBM38	93	63.478	ENSXETG00000011268	rbm38	97	62.609	Xenopus_tropicalis
ENSSDUG00000021082	RBM38	71	77.654	ENSXCOG00000017324	-	73	77.654	Xiphophorus_couchianus
ENSSDUG00000021082	RBM38	100	60.956	ENSXMAG00000023662	rbm38	98	61.905	Xiphophorus_maculatus