EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000021201 (Gene tree)
Gene ID: 111225183
Gene Symbol: sf3b3
Alias: ik:tdsubc_2b2|wu:fb81f05|xx:tdsubc_2b2|zgc:55440
Full Name: splicing factor 3b subunit 3
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 29126 bases
Position: chrBDQW01000147.1:753769-782894
Accession: 111225183
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000029467	CPSF_A	PF03178.15	8.8e-100	1	1
ENSSDUP00000029498	CPSF_A	PF03178.15	8.8e-100	1	1
ENSSDUP00000029527	CPSF_A	PF03178.15	8.7e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000029965	-	5723	XM_022749889	ENSSDUP00000029467	1217 (aa)	XP_022605610	UPI000BBF39ED
ENSSDUT00000029998	-	5296	-	ENSSDUP00000029498	1217 (aa)	-	UPI000BBF39ED
ENSSDUT00000030026	-	2985	-	ENSSDUP00000029527	994 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000021201's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021201's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021201	sf3b3	100	93.591	ENSG00000189091	SF3B3	100	98.246	Homo_sapiens
ENSSDUG00000021201	sf3b3	96	98.719	ENSAPOG00000006172	sf3b3	98	98.719	Acanthochromis_polyacanthus
ENSSDUG00000021201	sf3b3	100	93.443	ENSAMEG00000002187	SF3B3	100	93.443	Ailuropoda_melanoleuca
ENSSDUG00000021201	sf3b3	92	95.804	ENSACIG00000016487	sf3b3	100	95.804	Amphilophus_citrinellus
ENSSDUG00000021201	sf3b3	100	98.685	ENSAOCG00000007158	sf3b3	100	98.685	Amphiprion_ocellaris
ENSSDUG00000021201	sf3b3	100	98.685	ENSAPEG00000022786	sf3b3	100	98.685	Amphiprion_percula
ENSSDUG00000021201	sf3b3	100	99.096	ENSATEG00000013708	sf3b3	100	99.096	Anabas_testudineus
ENSSDUG00000021201	sf3b3	98	90.863	ENSAPLG00000004996	SF3B3	99	93.598	Anas_platyrhynchos
ENSSDUG00000021201	sf3b3	100	93.673	ENSACAG00000001817	SF3B3	100	93.673	Anolis_carolinensis
ENSSDUG00000021201	sf3b3	100	93.591	ENSANAG00000028001	SF3B3	100	93.591	Aotus_nancymaae
ENSSDUG00000021201	sf3b3	96	98.804	ENSACLG00000022555	sf3b3	98	98.804	Astatotilapia_calliptera
ENSSDUG00000021201	sf3b3	100	97.864	ENSAMXG00000003410	sf3b3	100	97.864	Astyanax_mexicanus
ENSSDUG00000021201	sf3b3	100	93.591	ENSBTAG00000010627	SF3B3	100	93.591	Bos_taurus
ENSSDUG00000021201	sf3b3	100	60.016	WBGene00019323	teg-4	100	60.016	Caenorhabditis_elegans
ENSSDUG00000021201	sf3b3	100	93.591	ENSCJAG00000014773	SF3B3	99	93.591	Callithrix_jacchus
ENSSDUG00000021201	sf3b3	100	93.673	ENSCAFG00000020151	SF3B3	100	93.673	Canis_familiaris
ENSSDUG00000021201	sf3b3	100	93.673	ENSCAFG00020020912	SF3B3	100	93.673	Canis_lupus_dingo
ENSSDUG00000021201	sf3b3	100	93.673	ENSCHIG00000019822	SF3B3	100	93.673	Capra_hircus
ENSSDUG00000021201	sf3b3	100	93.591	ENSTSYG00000007910	SF3B3	100	93.591	Carlito_syrichta
ENSSDUG00000021201	sf3b3	84	80.320	ENSCAPG00000001484	SF3B3	92	80.320	Cavia_aperea
ENSSDUG00000021201	sf3b3	100	92.276	ENSCPOG00000000586	SF3B3	100	92.276	Cavia_porcellus
ENSSDUG00000021201	sf3b3	100	93.591	ENSCCAG00000017736	SF3B3	100	93.591	Cebus_capucinus
ENSSDUG00000021201	sf3b3	100	93.591	ENSCATG00000036562	SF3B3	100	93.591	Cercocebus_atys
ENSSDUG00000021201	sf3b3	100	93.591	ENSCLAG00000003921	SF3B3	100	93.591	Chinchilla_lanigera
ENSSDUG00000021201	sf3b3	100	93.591	ENSCSAG00000004371	SF3B3	100	93.591	Chlorocebus_sabaeus
ENSSDUG00000021201	sf3b3	90	90.031	ENSCHOG00000001878	SF3B3	90	90.031	Choloepus_hoffmanni
ENSSDUG00000021201	sf3b3	100	93.262	ENSCPBG00000015853	SF3B3	100	93.262	Chrysemys_picta_bellii
ENSSDUG00000021201	sf3b3	100	79.967	ENSCING00000001342	-	100	79.967	Ciona_intestinalis
ENSSDUG00000021201	sf3b3	99	78.571	ENSCSAVG00000011454	-	100	78.571	Ciona_savignyi
ENSSDUG00000021201	sf3b3	98	91.972	ENSCANG00000042920	SF3B3	100	90.386	Colobus_angolensis_palliatus
ENSSDUG00000021201	sf3b3	100	93.509	ENSCGRG00001015908	Sf3b3	100	93.509	Cricetulus_griseus_chok1gshd
ENSSDUG00000021201	sf3b3	100	93.509	ENSCGRG00000010180	Sf3b3	100	93.509	Cricetulus_griseus_crigri
ENSSDUG00000021201	sf3b3	98	95.736	ENSCSEG00000014192	sf3b3	99	97.206	Cynoglossus_semilaevis
ENSSDUG00000021201	sf3b3	100	97.864	ENSCVAG00000010459	sf3b3	100	97.864	Cyprinodon_variegatus
ENSSDUG00000021201	sf3b3	100	97.288	ENSDARG00000103553	sf3b3	100	97.288	Danio_rerio
ENSSDUG00000021201	sf3b3	85	93.250	ENSDNOG00000043626	SF3B3	100	93.250	Dasypus_novemcinctus
ENSSDUG00000021201	sf3b3	100	93.591	ENSDORG00000014176	Sf3b3	100	93.591	Dipodomys_ordii
ENSSDUG00000021201	sf3b3	100	74.797	FBgn0035162	Sf3b3	100	74.797	Drosophila_melanogaster
ENSSDUG00000021201	sf3b3	84	96.203	ENSETEG00000002729	SF3B3	84	96.203	Echinops_telfairi
ENSSDUG00000021201	sf3b3	100	86.771	ENSEBUG00000006117	sf3b3	100	86.771	Eptatretus_burgeri
ENSSDUG00000021201	sf3b3	100	93.673	ENSEASG00005013376	SF3B3	100	93.673	Equus_asinus_asinus
ENSSDUG00000021201	sf3b3	100	93.673	ENSECAG00000014053	SF3B3	100	93.673	Equus_caballus
ENSSDUG00000021201	sf3b3	93	92.982	ENSEEUG00000015611	SF3B3	93	92.982	Erinaceus_europaeus
ENSSDUG00000021201	sf3b3	100	96.475	ENSELUG00000015417	sf3b3	100	96.475	Esox_lucius
ENSSDUG00000021201	sf3b3	100	93.673	ENSFCAG00000009487	SF3B3	100	93.673	Felis_catus
ENSSDUG00000021201	sf3b3	100	93.344	ENSFALG00000007372	SF3B3	100	93.344	Ficedula_albicollis
ENSSDUG00000021201	sf3b3	100	93.591	ENSFDAG00000002608	SF3B3	100	93.591	Fukomys_damarensis
ENSSDUG00000021201	sf3b3	100	98.603	ENSFHEG00000017824	sf3b3	100	98.603	Fundulus_heteroclitus
ENSSDUG00000021201	sf3b3	100	94.253	ENSGMOG00000008139	sf3b3	100	94.253	Gadus_morhua
ENSSDUG00000021201	sf3b3	100	93.591	ENSGALG00000002531	SF3B3	100	93.591	Gallus_gallus
ENSSDUG00000021201	sf3b3	100	97.864	ENSGAFG00000015206	sf3b3	100	97.864	Gambusia_affinis
ENSSDUG00000021201	sf3b3	100	98.276	ENSGACG00000002646	sf3b3	100	98.276	Gasterosteus_aculeatus
ENSSDUG00000021201	sf3b3	98	91.667	ENSGAGG00000006746	SF3B3	97	93.424	Gopherus_agassizii
ENSSDUG00000021201	sf3b3	100	93.591	ENSGGOG00000003246	SF3B3	100	93.591	Gorilla_gorilla
ENSSDUG00000021201	sf3b3	92	91.786	ENSHBUG00000005960	sf3b3	100	91.786	Haplochromis_burtoni
ENSSDUG00000021201	sf3b3	100	93.591	ENSHGLG00000010135	SF3B3	100	93.591	Heterocephalus_glaber_female
ENSSDUG00000021201	sf3b3	100	91.484	ENSHGLG00100011148	SF3B3	100	91.484	Heterocephalus_glaber_male
ENSSDUG00000021201	sf3b3	100	97.781	ENSHCOG00000011981	sf3b3	100	97.781	Hippocampus_comes
ENSSDUG00000021201	sf3b3	100	97.699	ENSIPUG00000020435	sf3b3	100	97.699	Ictalurus_punctatus
ENSSDUG00000021201	sf3b3	100	93.591	ENSSTOG00000007065	SF3B3	100	93.591	Ictidomys_tridecemlineatus
ENSSDUG00000021201	sf3b3	100	93.591	ENSJJAG00000003948	Sf3b3	100	93.591	Jaculus_jaculus
ENSSDUG00000021201	sf3b3	100	96.056	ENSKMAG00000004066	sf3b3	99	98.207	Kryptolebias_marmoratus
ENSSDUG00000021201	sf3b3	100	98.357	ENSLBEG00000018302	sf3b3	100	98.357	Labrus_bergylta
ENSSDUG00000021201	sf3b3	98	90.365	ENSLACG00000012501	SF3B3	99	90.365	Latimeria_chalumnae
ENSSDUG00000021201	sf3b3	100	96.962	ENSLOCG00000007566	sf3b3	100	96.962	Lepisosteus_oculatus
ENSSDUG00000021201	sf3b3	100	93.673	ENSLAFG00000012219	SF3B3	100	93.673	Loxodonta_africana
ENSSDUG00000021201	sf3b3	100	93.591	ENSMFAG00000045487	SF3B3	100	93.591	Macaca_fascicularis
ENSSDUG00000021201	sf3b3	100	93.591	ENSMMUG00000017812	SF3B3	100	93.591	Macaca_mulatta
ENSSDUG00000021201	sf3b3	100	93.591	ENSMNEG00000033385	SF3B3	100	93.591	Macaca_nemestrina
ENSSDUG00000021201	sf3b3	100	90.058	ENSMLEG00000043891	SF3B3	100	90.058	Mandrillus_leucophaeus
ENSSDUG00000021201	sf3b3	100	99.178	ENSMAMG00000016837	sf3b3	100	99.178	Mastacembelus_armatus
ENSSDUG00000021201	sf3b3	89	95.745	ENSMZEG00005026015	sf3b3	99	95.745	Maylandia_zebra
ENSSDUG00000021201	sf3b3	100	98.850	ENSMZEG00005010836	sf3b3	100	98.850	Maylandia_zebra
ENSSDUG00000021201	sf3b3	100	93.591	ENSMGAG00000001597	SF3B3	100	93.591	Meleagris_gallopavo
ENSSDUG00000021201	sf3b3	81	76.404	ENSMAUG00000013618	Sf3b3	95	77.154	Mesocricetus_auratus
ENSSDUG00000021201	sf3b3	100	92.617	ENSMICG00000001363	SF3B3	100	92.617	Microcebus_murinus
ENSSDUG00000021201	sf3b3	100	93.509	ENSMOCG00000006108	Sf3b3	100	93.509	Microtus_ochrogaster
ENSSDUG00000021201	sf3b3	89	95.837	ENSMMOG00000002598	sf3b3	97	95.837	Mola_mola
ENSSDUG00000021201	sf3b3	100	89.573	ENSMODG00000014363	SF3B3	100	89.573	Monodelphis_domestica
ENSSDUG00000021201	sf3b3	100	98.439	ENSMALG00000008014	sf3b3	100	98.439	Monopterus_albus
ENSSDUG00000021201	sf3b3	100	93.591	MGP_CAROLIEiJ_G0031563	Sf3b3	100	93.591	Mus_caroli
ENSSDUG00000021201	sf3b3	100	93.509	ENSMUSG00000033732	Sf3b3	100	93.509	Mus_musculus
ENSSDUG00000021201	sf3b3	100	93.509	MGP_SPRETEiJ_G0032681	Sf3b3	100	93.509	Mus_spretus
ENSSDUG00000021201	sf3b3	100	93.673	ENSMPUG00000010277	SF3B3	100	93.673	Mustela_putorius_furo
ENSSDUG00000021201	sf3b3	100	93.509	ENSMLUG00000014607	SF3B3	100	93.509	Myotis_lucifugus
ENSSDUG00000021201	sf3b3	100	93.591	ENSNGAG00000021903	Sf3b3	100	93.591	Nannospalax_galili
ENSSDUG00000021201	sf3b3	83	97.222	ENSNBRG00000007197	sf3b3	99	97.222	Neolamprologus_brichardi
ENSSDUG00000021201	sf3b3	100	92.118	ENSNLEG00000016127	SF3B3	100	92.118	Nomascus_leucogenys
ENSSDUG00000021201	sf3b3	92	89.410	ENSMEUG00000004479	SF3B3	94	89.410	Notamacropus_eugenii
ENSSDUG00000021201	sf3b3	98	90.612	ENSOPRG00000009847	SF3B3	100	90.612	Ochotona_princeps
ENSSDUG00000021201	sf3b3	100	93.591	ENSODEG00000014154	SF3B3	100	93.591	Octodon_degus
ENSSDUG00000021201	sf3b3	100	98.932	ENSONIG00000011198	sf3b3	100	98.932	Oreochromis_niloticus
ENSSDUG00000021201	sf3b3	100	93.755	ENSOANG00000001161	-	100	93.755	Ornithorhynchus_anatinus
ENSSDUG00000021201	sf3b3	100	91.619	ENSOCUG00000004139	SF3B3	100	91.619	Oryctolagus_cuniculus
ENSSDUG00000021201	sf3b3	100	97.781	ENSORLG00000013472	sf3b3	100	97.781	Oryzias_latipes
ENSSDUG00000021201	sf3b3	100	97.781	ENSORLG00020017473	sf3b3	100	97.781	Oryzias_latipes_hni
ENSSDUG00000021201	sf3b3	100	97.781	ENSORLG00015007710	sf3b3	100	97.781	Oryzias_latipes_hsok
ENSSDUG00000021201	sf3b3	100	97.781	ENSOMEG00000014483	sf3b3	100	97.781	Oryzias_melastigma
ENSSDUG00000021201	sf3b3	100	93.279	ENSOGAG00000016051	SF3B3	100	93.279	Otolemur_garnettii
ENSSDUG00000021201	sf3b3	100	93.443	ENSOARG00000004816	SF3B3	100	93.443	Ovis_aries
ENSSDUG00000021201	sf3b3	100	93.591	ENSPPAG00000026807	SF3B3	100	93.591	Pan_paniscus
ENSSDUG00000021201	sf3b3	100	93.673	ENSPPRG00000001686	SF3B3	100	93.673	Panthera_pardus
ENSSDUG00000021201	sf3b3	89	90.708	ENSPTIG00000020382	SF3B3	100	90.708	Panthera_tigris_altaica
ENSSDUG00000021201	sf3b3	100	93.591	ENSPTRG00000008308	SF3B3	100	93.591	Pan_troglodytes
ENSSDUG00000021201	sf3b3	100	93.591	ENSPANG00000024075	SF3B3	100	93.591	Papio_anubis
ENSSDUG00000021201	sf3b3	100	97.124	ENSPKIG00000002712	sf3b3	100	97.124	Paramormyrops_kingsleyae
ENSSDUG00000021201	sf3b3	89	93.376	ENSPSIG00000002232	SF3B3	100	93.376	Pelodiscus_sinensis
ENSSDUG00000021201	sf3b3	100	93.509	ENSPEMG00000008603	Sf3b3	100	93.509	Peromyscus_maniculatus_bairdii
ENSSDUG00000021201	sf3b3	100	90.797	ENSPMAG00000001793	sf3b3	100	90.797	Petromyzon_marinus
ENSSDUG00000021201	sf3b3	100	93.755	ENSPCIG00000014927	SF3B3	100	93.755	Phascolarctos_cinereus
ENSSDUG00000021201	sf3b3	100	98.110	ENSPFOG00000015516	sf3b3	100	98.110	Poecilia_formosa
ENSSDUG00000021201	sf3b3	100	98.110	ENSPLAG00000014330	sf3b3	100	98.110	Poecilia_latipinna
ENSSDUG00000021201	sf3b3	100	98.192	ENSPMEG00000019856	sf3b3	100	98.192	Poecilia_mexicana
ENSSDUG00000021201	sf3b3	99	95.147	ENSPREG00000019669	sf3b3	97	98.171	Poecilia_reticulata
ENSSDUG00000021201	sf3b3	95	94.030	ENSPPYG00000007539	SF3B3	100	94.030	Pongo_abelii
ENSSDUG00000021201	sf3b3	100	73.048	ENSPCAG00000002623	SF3B3	100	73.048	Procavia_capensis
ENSSDUG00000021201	sf3b3	84	97.196	ENSPCOG00000026582	SF3B3	100	97.196	Propithecus_coquereli
ENSSDUG00000021201	sf3b3	100	93.591	ENSPVAG00000000684	SF3B3	100	93.591	Pteropus_vampyrus
ENSSDUG00000021201	sf3b3	100	98.767	ENSPNYG00000003528	sf3b3	100	98.767	Pundamilia_nyererei
ENSSDUG00000021201	sf3b3	100	97.535	ENSPNAG00000015419	sf3b3	100	97.535	Pygocentrus_nattereri
ENSSDUG00000021201	sf3b3	100	93.509	ENSRNOG00000017724	Sf3b3	100	93.509	Rattus_norvegicus
ENSSDUG00000021201	sf3b3	100	93.591	ENSRBIG00000021904	SF3B3	100	93.591	Rhinopithecus_bieti
ENSSDUG00000021201	sf3b3	100	93.591	ENSRROG00000045703	SF3B3	100	93.591	Rhinopithecus_roxellana
ENSSDUG00000021201	sf3b3	100	93.591	ENSSBOG00000029156	SF3B3	100	93.591	Saimiri_boliviensis_boliviensis
ENSSDUG00000021201	sf3b3	100	93.755	ENSSHAG00000000372	SF3B3	100	93.755	Sarcophilus_harrisii
ENSSDUG00000021201	sf3b3	100	97.288	ENSSFOG00015012877	sf3b3	100	97.288	Scleropages_formosus
ENSSDUG00000021201	sf3b3	100	98.439	ENSSMAG00000014386	sf3b3	100	98.439	Scophthalmus_maximus
ENSSDUG00000021201	sf3b3	100	99.918	ENSSLDG00000017532	sf3b3	100	99.918	Seriola_lalandi_dorsalis
ENSSDUG00000021201	sf3b3	98	91.870	ENSSARG00000006917	SF3B3	93	93.382	Sorex_araneus
ENSSDUG00000021201	sf3b3	100	93.426	ENSSPUG00000006253	SF3B3	100	93.426	Sphenodon_punctatus
ENSSDUG00000021201	sf3b3	100	91.126	ENSSPAG00000003125	sf3b3	100	91.126	Stegastes_partitus
ENSSDUG00000021201	sf3b3	100	93.673	ENSSSCG00000025323	SF3B3	100	93.673	Sus_scrofa
ENSSDUG00000021201	sf3b3	100	93.514	ENSTGUG00000006082	SF3B3	100	93.514	Taeniopygia_guttata
ENSSDUG00000021201	sf3b3	53	86.792	ENSTRUG00000015623	sf3b3	88	88.265	Takifugu_rubripes
ENSSDUG00000021201	sf3b3	99	94.567	ENSTNIG00000004857	sf3b3	100	98.070	Tetraodon_nigroviridis
ENSSDUG00000021201	sf3b3	91	91.927	ENSTBEG00000002946	SF3B3	100	79.577	Tupaia_belangeri
ENSSDUG00000021201	sf3b3	100	92.851	ENSTTRG00000005855	SF3B3	100	92.851	Tursiops_truncatus
ENSSDUG00000021201	sf3b3	100	93.673	ENSUAMG00000006780	SF3B3	100	93.673	Ursus_americanus
ENSSDUG00000021201	sf3b3	100	93.673	ENSUMAG00000017757	SF3B3	100	93.673	Ursus_maritimus
ENSSDUG00000021201	sf3b3	100	78.636	ENSVPAG00000003202	SF3B3	100	78.636	Vicugna_pacos
ENSSDUG00000021201	sf3b3	100	93.673	ENSVVUG00000017922	SF3B3	100	93.673	Vulpes_vulpes
ENSSDUG00000021201	sf3b3	100	93.919	ENSXETG00000032869	SF3B3	100	93.919	Xenopus_tropicalis
ENSSDUG00000021201	sf3b3	94	95.648	ENSXCOG00000013628	sf3b3	97	98.408	Xiphophorus_couchianus
ENSSDUG00000021201	sf3b3	100	98.110	ENSXMAG00000006334	sf3b3	100	98.110	Xiphophorus_maculatus