EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000021302 (Gene tree)
Gene ID: -
Gene Symbol: pdcd11
Alias: cb680|im:7148359|sb:cb680|wu:fc68c10
Full Name: programmed cell death 11
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 12734 bases
Position: chrBDQW01000230.1:1218548-1231281
Accession: 111229234
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000029623	Suf	PF05843.14	9.4e-10	1	2
ENSSDUP00000029623	Suf	PF05843.14	9.4e-10	2	2
ENSSDUP00000029623	S1	PF00575.23	8.1e-57	1	3
ENSSDUP00000029623	S1	PF00575.23	8.1e-57	2	3
ENSSDUP00000029623	S1	PF00575.23	8.1e-57	3	3
ENSSDUP00000029670	S1	PF00575.23	5.1e-52	1	3
ENSSDUP00000029670	S1	PF00575.23	5.1e-52	2	3
ENSSDUP00000029670	S1	PF00575.23	5.1e-52	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000030174	-	2622	-	ENSSDUP00000029670	873 (aa)	-	-
ENSSDUT00000030127	-	4725	XM_022755472	ENSSDUP00000029623	1574 (aa)	XP_022611193	-

Gene Model

Click here to download ENSSDUG00000021302's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021302's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021302	pdcd11	99	48.353	ENSG00000148843	PDCD11	100	48.132	Homo_sapiens
ENSSDUG00000021302	pdcd11	99	74.429	ENSAPOG00000015629	pdcd11	98	74.009	Acanthochromis_polyacanthus
ENSSDUG00000021302	pdcd11	99	46.884	ENSAMEG00000017935	PDCD11	96	47.210	Ailuropoda_melanoleuca
ENSSDUG00000021302	pdcd11	99	72.472	ENSACIG00000006458	-	99	72.472	Amphilophus_citrinellus
ENSSDUG00000021302	pdcd11	99	74.946	ENSAOCG00000015287	pdcd11	99	72.222	Amphiprion_ocellaris
ENSSDUG00000021302	pdcd11	99	74.837	ENSAPEG00000020240	pdcd11	99	67.463	Amphiprion_percula
ENSSDUG00000021302	pdcd11	99	79.194	ENSATEG00000021043	pdcd11	99	74.225	Anabas_testudineus
ENSSDUG00000021302	pdcd11	99	49.300	ENSAPLG00000010301	PDCD11	96	46.377	Anas_platyrhynchos
ENSSDUG00000021302	pdcd11	99	49.755	ENSACAG00000004796	PDCD11	94	49.264	Anolis_carolinensis
ENSSDUG00000021302	pdcd11	99	46.505	ENSANAG00000034576	PDCD11	97	47.346	Aotus_nancymaae
ENSSDUG00000021302	pdcd11	91	83.432	ENSACLG00000018236	pdcd11	97	83.432	Astatotilapia_calliptera
ENSSDUG00000021302	pdcd11	99	53.356	ENSAMXG00000005458	pdcd11	94	52.461	Astyanax_mexicanus
ENSSDUG00000021302	pdcd11	99	46.991	ENSBTAG00000009715	PDCD11	96	46.132	Bos_taurus
ENSSDUG00000021302	pdcd11	99	46.515	ENSCJAG00000018257	PDCD11	100	47.633	Callithrix_jacchus
ENSSDUG00000021302	pdcd11	99	47.633	ENSCAFG00000010411	PDCD11	97	47.202	Canis_familiaris
ENSSDUG00000021302	pdcd11	99	49.403	ENSCAFG00020010369	PDCD11	97	49.104	Canis_lupus_dingo
ENSSDUG00000021302	pdcd11	99	46.055	ENSCHIG00000025218	PDCD11	96	45.624	Capra_hircus
ENSSDUG00000021302	pdcd11	97	47.685	ENSTSYG00000033423	PDCD11	93	47.994	Carlito_syrichta
ENSSDUG00000021302	pdcd11	97	47.465	ENSCAPG00000005386	PDCD11	96	46.718	Cavia_aperea
ENSSDUG00000021302	pdcd11	99	49.545	ENSCPOG00000010957	PDCD11	96	48.640	Cavia_porcellus
ENSSDUG00000021302	pdcd11	99	46.714	ENSCCAG00000018950	PDCD11	97	47.399	Cebus_capucinus
ENSSDUG00000021302	pdcd11	99	48.132	ENSCATG00000044331	PDCD11	100	47.982	Cercocebus_atys
ENSSDUG00000021302	pdcd11	99	48.851	ENSCLAG00000001029	PDCD11	95	48.233	Chinchilla_lanigera
ENSSDUG00000021302	pdcd11	99	48.132	ENSCSAG00000005346	PDCD11	100	47.982	Chlorocebus_sabaeus
ENSSDUG00000021302	pdcd11	61	69.767	ENSCHOG00000004796	PDCD11	63	69.767	Choloepus_hoffmanni
ENSSDUG00000021302	pdcd11	92	64.012	ENSCPBG00000024487	PDCD11	96	63.450	Chrysemys_picta_bellii
ENSSDUG00000021302	pdcd11	95	31.544	ENSCING00000002715	-	76	34.911	Ciona_intestinalis
ENSSDUG00000021302	pdcd11	99	47.683	ENSCANG00000043300	PDCD11	100	48.132	Colobus_angolensis_palliatus
ENSSDUG00000021302	pdcd11	99	49.846	ENSCGRG00001006458	Pdcd11	98	48.402	Cricetulus_griseus_chok1gshd
ENSSDUG00000021302	pdcd11	99	49.615	ENSCGRG00000003583	Pdcd11	98	48.250	Cricetulus_griseus_crigri
ENSSDUG00000021302	pdcd11	99	72.429	ENSCSEG00000010739	pdcd11	98	67.678	Cynoglossus_semilaevis
ENSSDUG00000021302	pdcd11	99	61.261	ENSCVAG00000018903	pdcd11	99	59.718	Cyprinodon_variegatus
ENSSDUG00000021302	pdcd11	99	56.542	ENSDARG00000052480	pdcd11	94	57.075	Danio_rerio
ENSSDUG00000021302	pdcd11	99	48.516	ENSDNOG00000013838	PDCD11	72	38.166	Dasypus_novemcinctus
ENSSDUG00000021302	pdcd11	99	49.436	ENSDORG00000010420	Pdcd11	97	50.324	Dipodomys_ordii
ENSSDUG00000021302	pdcd11	58	31.336	FBgn0039182	CG5728	69	35.207	Drosophila_melanogaster
ENSSDUG00000021302	pdcd11	87	53.571	ENSETEG00000000813	PDCD11	84	53.571	Echinops_telfairi
ENSSDUG00000021302	pdcd11	54	49.502	ENSEBUG00000002358	-	73	49.502	Eptatretus_burgeri
ENSSDUG00000021302	pdcd11	97	49.028	ENSEASG00005015159	PDCD11	95	49.329	Equus_asinus_asinus
ENSSDUG00000021302	pdcd11	99	49.477	ENSECAG00000020507	PDCD11	95	49.627	Equus_caballus
ENSSDUG00000021302	pdcd11	87	53.571	ENSEEUG00000009245	PDCD11	84	53.571	Erinaceus_europaeus
ENSSDUG00000021302	pdcd11	99	61.493	ENSELUG00000004211	pdcd11	97	60.699	Esox_lucius
ENSSDUG00000021302	pdcd11	99	47.346	ENSFCAG00000002384	PDCD11	97	47.489	Felis_catus
ENSSDUG00000021302	pdcd11	99	48.132	ENSFALG00000008775	PDCD11	96	48.132	Ficedula_albicollis
ENSSDUG00000021302	pdcd11	99	49.020	ENSFDAG00000009532	PDCD11	95	47.669	Fukomys_damarensis
ENSSDUG00000021302	pdcd11	87	91.216	ENSFHEG00000022997	pdcd11	89	91.216	Fundulus_heteroclitus
ENSSDUG00000021302	pdcd11	98	57.017	ENSGMOG00000004186	pdcd11	92	55.912	Gadus_morhua
ENSSDUG00000021302	pdcd11	99	42.060	ENSGALG00000008265	PDCD11	93	40.663	Gallus_gallus
ENSSDUG00000021302	pdcd11	99	65.525	ENSGAFG00000012806	pdcd11	98	63.470	Gambusia_affinis
ENSSDUG00000021302	pdcd11	99	73.292	ENSGACG00000018233	pdcd11	95	86.631	Gasterosteus_aculeatus
ENSSDUG00000021302	pdcd11	97	46.588	ENSGAGG00000024314	PDCD11	96	47.754	Gopherus_agassizii
ENSSDUG00000021302	pdcd11	99	48.196	ENSGGOG00000011621	PDCD11	97	47.475	Gorilla_gorilla
ENSSDUG00000021302	pdcd11	99	74.046	ENSHBUG00000020226	pdcd11	97	71.654	Haplochromis_burtoni
ENSSDUG00000021302	pdcd11	99	47.892	ENSHGLG00000001462	PDCD11	96	46.988	Heterocephalus_glaber_female
ENSSDUG00000021302	pdcd11	99	46.386	ENSHGLG00100018779	PDCD11	96	45.482	Heterocephalus_glaber_male
ENSSDUG00000021302	pdcd11	99	72.964	ENSHCOG00000016006	pdcd11	95	72.831	Hippocampus_comes
ENSSDUG00000021302	pdcd11	99	53.696	ENSIPUG00000015102	pdcd11	99	53.696	Ictalurus_punctatus
ENSSDUG00000021302	pdcd11	99	49.770	ENSSTOG00000014553	PDCD11	95	49.002	Ictidomys_tridecemlineatus
ENSSDUG00000021302	pdcd11	99	50.153	ENSJJAG00000015523	Pdcd11	95	49.846	Jaculus_jaculus
ENSSDUG00000021302	pdcd11	99	71.681	ENSKMAG00000021182	pdcd11	99	71.239	Kryptolebias_marmoratus
ENSSDUG00000021302	pdcd11	94	74.576	ENSLBEG00000009990	-	93	74.576	Labrus_bergylta
ENSSDUG00000021302	pdcd11	99	56.536	ENSLOCG00000011818	pdcd11	95	56.046	Lepisosteus_oculatus
ENSSDUG00000021302	pdcd11	99	48.126	ENSLAFG00000008398	PDCD11	96	47.526	Loxodonta_africana
ENSSDUG00000021302	pdcd11	99	48.132	ENSMFAG00000044058	PDCD11	100	47.982	Macaca_fascicularis
ENSSDUG00000021302	pdcd11	99	46.753	ENSMMUG00000007058	PDCD11	100	46.609	Macaca_mulatta
ENSSDUG00000021302	pdcd11	99	47.904	ENSMNEG00000040726	PDCD11	96	47.754	Macaca_nemestrina
ENSSDUG00000021302	pdcd11	99	47.754	ENSMLEG00000040978	PDCD11	97	47.741	Mandrillus_leucophaeus
ENSSDUG00000021302	pdcd11	99	78.431	ENSMAMG00000009572	pdcd11	98	73.324	Mastacembelus_armatus
ENSSDUG00000021302	pdcd11	99	74.046	ENSMZEG00005008949	pdcd11	97	71.811	Maylandia_zebra
ENSSDUG00000021302	pdcd11	99	45.532	ENSMGAG00000010482	PDCD11	96	46.525	Meleagris_gallopavo
ENSSDUG00000021302	pdcd11	100	42.398	ENSMAUG00000014924	Pdcd11	95	48.558	Mesocricetus_auratus
ENSSDUG00000021302	pdcd11	99	49.619	ENSMICG00000012421	PDCD11	96	48.936	Microcebus_murinus
ENSSDUG00000021302	pdcd11	99	48.666	ENSMOCG00000021792	Pdcd11	95	48.670	Microtus_ochrogaster
ENSSDUG00000021302	pdcd11	98	76.625	ENSMMOG00000007572	pdcd11	97	76.625	Mola_mola
ENSSDUG00000021302	pdcd11	95	48.116	ENSMODG00000011077	PDCD11	91	49.141	Monodelphis_domestica
ENSSDUG00000021302	pdcd11	99	80.877	ENSMALG00000003859	pdcd11	99	80.877	Monopterus_albus
ENSSDUG00000021302	pdcd11	99	48.758	MGP_CAROLIEiJ_G0023050	Pdcd11	95	48.899	Mus_caroli
ENSSDUG00000021302	pdcd11	99	48.438	ENSMUSG00000025047	Pdcd11	95	48.594	Mus_musculus
ENSSDUG00000021302	pdcd11	99	48.228	MGP_PahariEiJ_G0014540	Pdcd11	95	47.377	Mus_pahari
ENSSDUG00000021302	pdcd11	99	48.594	MGP_SPRETEiJ_G0023971	Pdcd11	95	48.750	Mus_spretus
ENSSDUG00000021302	pdcd11	99	47.050	ENSMPUG00000016829	PDCD11	99	48.494	Mustela_putorius_furo
ENSSDUG00000021302	pdcd11	99	48.855	ENSMLUG00000004997	PDCD11	96	46.571	Myotis_lucifugus
ENSSDUG00000021302	pdcd11	99	48.588	ENSNGAG00000018143	Pdcd11	95	48.204	Nannospalax_galili
ENSSDUG00000021302	pdcd11	82	83.226	ENSNBRG00000021596	pdcd11	91	78.107	Neolamprologus_brichardi
ENSSDUG00000021302	pdcd11	99	48.507	ENSNLEG00000026700	PDCD11	100	47.683	Nomascus_leucogenys
ENSSDUG00000021302	pdcd11	57	67.105	ENSMEUG00000013719	-	52	67.105	Notamacropus_eugenii
ENSSDUG00000021302	pdcd11	96	47.475	ENSOPRG00000010593	PDCD11	93	46.848	Ochotona_princeps
ENSSDUG00000021302	pdcd11	99	46.847	ENSODEG00000008079	PDCD11	95	47.226	Octodon_degus
ENSSDUG00000021302	pdcd11	99	74.809	ENSONIG00000018835	pdcd11	97	71.811	Oreochromis_niloticus
ENSSDUG00000021302	pdcd11	99	50.325	ENSOANG00000001636	-	96	48.333	Ornithorhynchus_anatinus
ENSSDUG00000021302	pdcd11	99	47.126	ENSOCUG00000006312	PDCD11	97	47.293	Oryctolagus_cuniculus
ENSSDUG00000021302	pdcd11	95	71.412	ENSORLG00000012995	pdcd11	96	71.412	Oryzias_latipes
ENSSDUG00000021302	pdcd11	99	70.820	ENSORLG00020003642	pdcd11	98	65.893	Oryzias_latipes_hni
ENSSDUG00000021302	pdcd11	99	70.820	ENSORLG00015001618	pdcd11	98	65.843	Oryzias_latipes_hsok
ENSSDUG00000021302	pdcd11	85	69.414	ENSOMEG00000010947	-	98	69.414	Oryzias_melastigma
ENSSDUG00000021302	pdcd11	66	68.429	ENSOMEG00000010904	pdcd11	95	67.941	Oryzias_melastigma
ENSSDUG00000021302	pdcd11	99	47.025	ENSOGAG00000008683	PDCD11	97	46.812	Otolemur_garnettii
ENSSDUG00000021302	pdcd11	99	45.768	ENSOARG00000003719	PDCD11	96	45.337	Ovis_aries
ENSSDUG00000021302	pdcd11	99	47.399	ENSPPAG00000024593	PDCD11	100	47.042	Pan_paniscus
ENSSDUG00000021302	pdcd11	99	47.118	ENSPPRG00000015133	PDCD11	96	47.406	Panthera_pardus
ENSSDUG00000021302	pdcd11	99	47.059	ENSPTIG00000011433	PDCD11	97	47.346	Panthera_tigris_altaica
ENSSDUG00000021302	pdcd11	99	47.262	ENSPTRG00000002911	PDCD11	100	46.898	Pan_troglodytes
ENSSDUG00000021302	pdcd11	99	47.839	ENSPANG00000020959	PDCD11	96	47.833	Papio_anubis
ENSSDUG00000021302	pdcd11	99	54.426	ENSPKIG00000000973	pdcd11	99	47.625	Paramormyrops_kingsleyae
ENSSDUG00000021302	pdcd11	99	44.951	ENSPSIG00000005102	PDCD11	95	41.577	Pelodiscus_sinensis
ENSSDUG00000021302	pdcd11	97	66.235	ENSPMGG00000007289	pdcd11	99	71.298	Periophthalmus_magnuspinnatus
ENSSDUG00000021302	pdcd11	99	47.958	ENSPEMG00000010315	Pdcd11	95	47.576	Peromyscus_maniculatus_bairdii
ENSSDUG00000021302	pdcd11	99	44.530	ENSPMAG00000003098	pdcd11	94	44.977	Petromyzon_marinus
ENSSDUG00000021302	pdcd11	99	45.827	ENSPCIG00000001118	PDCD11	91	60.106	Phascolarctos_cinereus
ENSSDUG00000021302	pdcd11	99	68.459	ENSPFOG00000006012	pdcd11	98	68.175	Poecilia_formosa
ENSSDUG00000021302	pdcd11	99	71.522	ENSPLAG00000014494	pdcd11	98	69.888	Poecilia_latipinna
ENSSDUG00000021302	pdcd11	99	70.696	ENSPMEG00000018177	pdcd11	99	77.186	Poecilia_mexicana
ENSSDUG00000021302	pdcd11	99	68.750	ENSPREG00000000475	pdcd11	98	68.467	Poecilia_reticulata
ENSSDUG00000021302	pdcd11	99	47.754	ENSPPYG00000002621	PDCD11	100	47.534	Pongo_abelii
ENSSDUG00000021302	pdcd11	63	53.800	ENSPCAG00000011663	PDCD11	60	52.918	Procavia_capensis
ENSSDUG00000021302	pdcd11	99	38.675	ENSPCOG00000023327	PDCD11	91	48.068	Propithecus_coquereli
ENSSDUG00000021302	pdcd11	99	46.991	ENSPVAG00000004176	PDCD11	95	46.628	Pteropus_vampyrus
ENSSDUG00000021302	pdcd11	99	74.046	ENSPNYG00000003979	pdcd11	97	71.811	Pundamilia_nyererei
ENSSDUG00000021302	pdcd11	94	57.280	ENSPNAG00000017225	pdcd11	97	54.155	Pygocentrus_nattereri
ENSSDUG00000021302	pdcd11	99	49.394	ENSRNOG00000020304	Pdcd11	95	49.088	Rattus_norvegicus
ENSSDUG00000021302	pdcd11	99	47.534	ENSRBIG00000011889	PDCD11	100	47.982	Rhinopithecus_bieti
ENSSDUG00000021302	pdcd11	99	47.683	ENSRROG00000030483	PDCD11	96	48.132	Rhinopithecus_roxellana
ENSSDUG00000021302	pdcd11	61	46.454	YMR229C	-	56	42.690	Saccharomyces_cerevisiae
ENSSDUG00000021302	pdcd11	99	46.648	ENSSBOG00000030308	PDCD11	100	47.633	Saimiri_boliviensis_boliviensis
ENSSDUG00000021302	pdcd11	99	46.465	ENSSHAG00000018258	PDCD11	95	45.821	Sarcophilus_harrisii
ENSSDUG00000021302	pdcd11	99	60.263	ENSSFOG00015003881	pdcd11	94	59.638	Scleropages_formosus
ENSSDUG00000021302	pdcd11	99	77.233	ENSSMAG00000006612	pdcd11	99	74.468	Scophthalmus_maximus
ENSSDUG00000021302	pdcd11	98	91.199	ENSSLDG00000010228	pdcd11	99	91.199	Seriola_lalandi_dorsalis
ENSSDUG00000021302	pdcd11	99	42.809	ENSSARG00000002540	PDCD11	59	59.259	Sorex_araneus
ENSSDUG00000021302	pdcd11	99	73.747	ENSSPAG00000017558	pdcd11	98	70.728	Stegastes_partitus
ENSSDUG00000021302	pdcd11	99	46.121	ENSSSCG00000010599	PDCD11	96	45.833	Sus_scrofa
ENSSDUG00000021302	pdcd11	99	70.601	ENSTRUG00000014291	pdcd11	98	62.179	Takifugu_rubripes
ENSSDUG00000021302	pdcd11	99	70.710	ENSTNIG00000012085	pdcd11	98	66.000	Tetraodon_nigroviridis
ENSSDUG00000021302	pdcd11	99	46.037	ENSTBEG00000001893	PDCD11	90	61.538	Tupaia_belangeri
ENSSDUG00000021302	pdcd11	94	45.776	ENSTTRG00000003356	PDCD11	89	45.763	Tursiops_truncatus
ENSSDUG00000021302	pdcd11	99	48.580	ENSUAMG00000018015	PDCD11	97	48.806	Ursus_americanus
ENSSDUG00000021302	pdcd11	96	50.927	ENSUMAG00000023567	PDCD11	93	50.519	Ursus_maritimus
ENSSDUG00000021302	pdcd11	80	48.357	ENSVPAG00000007405	PDCD11	67	54.348	Vicugna_pacos
ENSSDUG00000021302	pdcd11	99	48.350	ENSVVUG00000004457	PDCD11	97	48.637	Vulpes_vulpes
ENSSDUG00000021302	pdcd11	99	47.923	ENSXETG00000009482	pdcd11	95	47.463	Xenopus_tropicalis
ENSSDUG00000021302	pdcd11	99	68.147	ENSXCOG00000012420	pdcd11	97	60.432	Xiphophorus_couchianus
ENSSDUG00000021302	pdcd11	99	69.071	ENSXMAG00000004638	pdcd11	98	67.737	Xiphophorus_maculatus