EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000021410 (Gene tree)
Gene ID: 111226312
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 12121 bases
Position: chrBDQW01000017.1:5604907-5617027
Accession: 111226312
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000029726	ResIII	PF04851.15	8.7e-27	1	2
ENSSDUP00000029726	ResIII	PF04851.15	8.7e-27	2	2
ENSSDUP00000029726	DEAD	PF00270.29	4.3e-54	1	2
ENSSDUP00000029726	DEAD	PF00270.29	4.3e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000030239	-	6766	XM_022751389	ENSSDUP00000029726	2136 (aa)	XP_022607110	UPI000BBE1997

Gene Model

Click here to download ENSSDUG00000021410's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021410's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000021410	snrnp200	86	43.161	ENSSDUG00000010897	ascc3	88	42.865
ENSSDUG00000021410	snrnp200	64	31.509	ENSSDUG00000011424	hfm1	82	31.509

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021410	snrnp200	99	90.637	ENSG00000144028	SNRNP200	99	90.747	Homo_sapiens
ENSSDUG00000021410	snrnp200	100	99.251	ENSAPOG00000010223	snrnp200	100	99.251	Acanthochromis_polyacanthus
ENSSDUG00000021410	snrnp200	99	90.684	ENSAMEG00000008996	SNRNP200	99	90.794	Ailuropoda_melanoleuca
ENSSDUG00000021410	snrnp200	97	98.124	ENSACIG00000001764	snrnp200	98	98.124	Amphilophus_citrinellus
ENSSDUG00000021410	snrnp200	100	99.017	ENSAOCG00000024593	snrnp200	100	99.017	Amphiprion_ocellaris
ENSSDUG00000021410	snrnp200	97	98.232	ENSAPEG00000012554	snrnp200	100	98.232	Amphiprion_percula
ENSSDUG00000021410	snrnp200	100	99.017	ENSATEG00000022522	snrnp200	100	99.017	Anabas_testudineus
ENSSDUG00000021410	snrnp200	99	90.759	ENSAPLG00000004313	SNRNP200	99	90.823	Anas_platyrhynchos
ENSSDUG00000021410	snrnp200	99	89.930	ENSACAG00000000434	SNRNP200	100	89.930	Anolis_carolinensis
ENSSDUG00000021410	snrnp200	99	87.856	ENSANAG00000036625	SNRNP200	99	87.957	Aotus_nancymaae
ENSSDUG00000021410	snrnp200	100	97.800	ENSACLG00000011188	snrnp200	100	97.800	Astatotilapia_calliptera
ENSSDUG00000021410	snrnp200	99	95.205	ENSAMXG00000005684	snrnp200	99	95.205	Astyanax_mexicanus
ENSSDUG00000021410	snrnp200	99	90.449	ENSBTAG00000000848	SNRNP200	99	90.559	Bos_taurus
ENSSDUG00000021410	snrnp200	99	90.590	ENSCJAG00000007514	SNRNP200	99	90.700	Callithrix_jacchus
ENSSDUG00000021410	snrnp200	99	89.921	ENSCAFG00020019979	SNRNP200	99	91.798	Canis_lupus_dingo
ENSSDUG00000021410	snrnp200	99	90.403	ENSCHIG00000020611	SNRNP200	99	90.512	Capra_hircus
ENSSDUG00000021410	snrnp200	99	90.684	ENSTSYG00000010467	SNRNP200	99	90.794	Carlito_syrichta
ENSSDUG00000021410	snrnp200	99	90.174	ENSCAPG00000017234	SNRNP200	99	90.283	Cavia_aperea
ENSSDUG00000021410	snrnp200	99	90.496	ENSCPOG00000006776	SNRNP200	99	90.606	Cavia_porcellus
ENSSDUG00000021410	snrnp200	99	90.590	ENSCCAG00000033962	SNRNP200	99	90.700	Cebus_capucinus
ENSSDUG00000021410	snrnp200	99	90.637	ENSCATG00000015790	SNRNP200	99	90.747	Cercocebus_atys
ENSSDUG00000021410	snrnp200	99	90.543	ENSCLAG00000004116	SNRNP200	99	90.653	Chinchilla_lanigera
ENSSDUG00000021410	snrnp200	99	90.637	ENSCSAG00000017369	SNRNP200	99	90.747	Chlorocebus_sabaeus
ENSSDUG00000021410	snrnp200	73	93.701	ENSCHOG00000012981	-	58	93.701	Choloepus_hoffmanni
ENSSDUG00000021410	snrnp200	99	90.510	ENSCPBG00000022571	SNRNP200	99	92.500	Chrysemys_picta_bellii
ENSSDUG00000021410	snrnp200	99	75.782	ENSCING00000005082	-	99	76.019	Ciona_intestinalis
ENSSDUG00000021410	snrnp200	94	90.343	ENSCANG00000033932	SNRNP200	99	90.460	Colobus_angolensis_palliatus
ENSSDUG00000021410	snrnp200	99	90.637	ENSCGRG00001022610	Snrnp200	99	90.747	Cricetulus_griseus_chok1gshd
ENSSDUG00000021410	snrnp200	99	90.136	ENSCGRG00000016472	Snrnp200	99	90.244	Cricetulus_griseus_crigri
ENSSDUG00000021410	snrnp200	99	96.767	ENSCSEG00000016399	snrnp200	100	96.767	Cynoglossus_semilaevis
ENSSDUG00000021410	snrnp200	100	92.135	ENSCVAG00000017631	snrnp200	100	92.135	Cyprinodon_variegatus
ENSSDUG00000021410	snrnp200	100	94.616	ENSDARG00000077536	snrnp200	99	94.640	Danio_rerio
ENSSDUG00000021410	snrnp200	99	89.326	ENSDNOG00000011227	SNRNP200	99	89.432	Dasypus_novemcinctus
ENSSDUG00000021410	snrnp200	99	88.178	ENSDORG00000005861	Snrnp200	99	88.279	Dipodomys_ordii
ENSSDUG00000021410	snrnp200	100	73.929	FBgn0263599	l(3)72Ab	99	74.251	Drosophila_melanogaster
ENSSDUG00000021410	snrnp200	95	90.009	ENSETEG00000000162	SNRNP200	74	90.009	Echinops_telfairi
ENSSDUG00000021410	snrnp200	83	81.093	ENSEBUG00000016524	snrnp200	95	81.093	Eptatretus_burgeri
ENSSDUG00000021410	snrnp200	99	89.650	ENSEASG00005001884	SNRNP200	99	89.663	Equus_asinus_asinus
ENSSDUG00000021410	snrnp200	99	90.684	ENSECAG00000019675	SNRNP200	99	90.794	Equus_caballus
ENSSDUG00000021410	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSSDUG00000021410	snrnp200	100	96.678	ENSELUG00000018948	snrnp200	100	96.678	Esox_lucius
ENSSDUG00000021410	snrnp200	99	90.730	ENSFCAG00000010699	SNRNP200	99	90.841	Felis_catus
ENSSDUG00000021410	snrnp200	93	86.607	ENSFALG00000001368	-	94	86.607	Ficedula_albicollis
ENSSDUG00000021410	snrnp200	99	90.449	ENSFDAG00000004683	SNRNP200	99	90.559	Fukomys_damarensis
ENSSDUG00000021410	snrnp200	100	94.663	ENSFHEG00000003786	snrnp200	100	94.663	Fundulus_heteroclitus
ENSSDUG00000021410	snrnp200	100	95.327	ENSGMOG00000004881	snrnp200	99	95.214	Gadus_morhua
ENSSDUG00000021410	snrnp200	100	94.991	ENSGAFG00000010807	snrnp200	100	94.991	Gambusia_affinis
ENSSDUG00000021410	snrnp200	100	97.758	ENSGACG00000011474	snrnp200	99	97.758	Gasterosteus_aculeatus
ENSSDUG00000021410	snrnp200	95	92.771	ENSGAGG00000016069	SNRNP200	97	98.387	Gopherus_agassizii
ENSSDUG00000021410	snrnp200	99	90.637	ENSGGOG00000005174	SNRNP200	99	90.747	Gorilla_gorilla
ENSSDUG00000021410	snrnp200	97	95.139	ENSHBUG00000011322	snrnp200	99	95.139	Haplochromis_burtoni
ENSSDUG00000021410	snrnp200	99	90.496	ENSHGLG00000006654	SNRNP200	99	90.606	Heterocephalus_glaber_female
ENSSDUG00000021410	snrnp200	99	90.496	ENSHGLG00100018594	SNRNP200	99	90.606	Heterocephalus_glaber_male
ENSSDUG00000021410	snrnp200	99	90.730	ENSSTOG00000016351	SNRNP200	99	90.841	Ictidomys_tridecemlineatus
ENSSDUG00000021410	snrnp200	99	90.403	ENSJJAG00000023659	Snrnp200	99	90.512	Jaculus_jaculus
ENSSDUG00000021410	snrnp200	100	94.960	ENSKMAG00000003665	snrnp200	100	94.960	Kryptolebias_marmoratus
ENSSDUG00000021410	snrnp200	100	98.174	ENSLBEG00000021585	snrnp200	100	98.174	Labrus_bergylta
ENSSDUG00000021410	snrnp200	82	92.321	ENSLACG00000000226	SNRNP200	99	92.454	Latimeria_chalumnae
ENSSDUG00000021410	snrnp200	100	94.387	ENSLOCG00000015198	snrnp200	99	94.411	Lepisosteus_oculatus
ENSSDUG00000021410	snrnp200	99	90.543	ENSLAFG00000015626	SNRNP200	99	90.653	Loxodonta_africana
ENSSDUG00000021410	snrnp200	99	90.590	ENSMFAG00000040174	SNRNP200	99	91.860	Macaca_fascicularis
ENSSDUG00000021410	snrnp200	99	90.590	ENSMMUG00000023261	SNRNP200	99	90.700	Macaca_mulatta
ENSSDUG00000021410	snrnp200	99	90.543	ENSMNEG00000032398	SNRNP200	99	90.653	Macaca_nemestrina
ENSSDUG00000021410	snrnp200	99	90.637	ENSMLEG00000019083	SNRNP200	99	91.860	Mandrillus_leucophaeus
ENSSDUG00000021410	snrnp200	100	97.894	ENSMAMG00000007851	snrnp200	100	97.894	Mastacembelus_armatus
ENSSDUG00000021410	snrnp200	97	95.139	ENSMZEG00005010787	snrnp200	99	95.139	Maylandia_zebra
ENSSDUG00000021410	snrnp200	97	90.373	ENSMGAG00000001831	SNRNP200	99	90.492	Meleagris_gallopavo
ENSSDUG00000021410	snrnp200	99	90.684	ENSMAUG00000011825	Snrnp200	99	90.794	Mesocricetus_auratus
ENSSDUG00000021410	snrnp200	99	90.684	ENSMICG00000004710	SNRNP200	99	90.794	Microcebus_murinus
ENSSDUG00000021410	snrnp200	99	88.811	ENSMOCG00000011814	Snrnp200	99	88.915	Microtus_ochrogaster
ENSSDUG00000021410	snrnp200	100	96.301	ENSMMOG00000014167	snrnp200	100	96.301	Mola_mola
ENSSDUG00000021410	snrnp200	99	90.637	ENSMODG00000008475	SNRNP200	99	90.700	Monodelphis_domestica
ENSSDUG00000021410	snrnp200	100	98.221	ENSMALG00000001973	snrnp200	100	98.221	Monopterus_albus
ENSSDUG00000021410	snrnp200	99	90.543	MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.653	Mus_caroli
ENSSDUG00000021410	snrnp200	99	90.590	ENSMUSG00000003660	Snrnp200	99	90.700	Mus_musculus
ENSSDUG00000021410	snrnp200	99	90.590	MGP_PahariEiJ_G0025695	Snrnp200	99	90.700	Mus_pahari
ENSSDUG00000021410	snrnp200	99	90.590	MGP_SPRETEiJ_G0025170	Snrnp200	99	93.239	Mus_spretus
ENSSDUG00000021410	snrnp200	99	90.730	ENSMPUG00000008949	SNRNP200	99	90.841	Mustela_putorius_furo
ENSSDUG00000021410	snrnp200	99	90.369	ENSMLUG00000010493	SNRNP200	99	90.478	Myotis_lucifugus
ENSSDUG00000021410	snrnp200	99	87.500	ENSMLUG00000027511	-	99	87.600	Myotis_lucifugus
ENSSDUG00000021410	snrnp200	99	90.637	ENSNGAG00000021993	Snrnp200	99	90.747	Nannospalax_galili
ENSSDUG00000021410	snrnp200	90	97.737	ENSNBRG00000017960	snrnp200	98	97.737	Neolamprologus_brichardi
ENSSDUG00000021410	snrnp200	99	86.378	ENSNLEG00000000025	SNRNP200	99	86.567	Nomascus_leucogenys
ENSSDUG00000021410	snrnp200	99	93.814	ENSMEUG00000010532	SNRNP200	78	92.857	Notamacropus_eugenii
ENSSDUG00000021410	snrnp200	96	89.494	ENSOPRG00000015464	SNRNP200	99	87.412	Ochotona_princeps
ENSSDUG00000021410	snrnp200	99	90.543	ENSODEG00000008366	SNRNP200	99	90.653	Octodon_degus
ENSSDUG00000021410	snrnp200	100	97.800	ENSONIG00000010714	snrnp200	100	97.800	Oreochromis_niloticus
ENSSDUG00000021410	snrnp200	99	90.590	ENSOCUG00000009864	SNRNP200	99	90.700	Oryctolagus_cuniculus
ENSSDUG00000021410	snrnp200	99	96.532	ENSORLG00000012286	snrnp200	100	96.587	Oryzias_latipes
ENSSDUG00000021410	snrnp200	99	96.626	ENSORLG00020004648	snrnp200	100	96.626	Oryzias_latipes_hni
ENSSDUG00000021410	snrnp200	99	96.673	ENSORLG00015019114	snrnp200	100	96.673	Oryzias_latipes_hsok
ENSSDUG00000021410	snrnp200	100	97.004	ENSOMEG00000011834	snrnp200	100	97.004	Oryzias_melastigma
ENSSDUG00000021410	snrnp200	99	90.684	ENSOGAG00000006879	SNRNP200	99	90.794	Otolemur_garnettii
ENSSDUG00000021410	snrnp200	99	89.705	ENSOARG00000013949	SNRNP200	99	89.812	Ovis_aries
ENSSDUG00000021410	snrnp200	99	90.637	ENSPPAG00000041559	SNRNP200	99	90.747	Pan_paniscus
ENSSDUG00000021410	snrnp200	99	90.730	ENSPPRG00000004435	SNRNP200	99	90.841	Panthera_pardus
ENSSDUG00000021410	snrnp200	99	90.309	ENSPTIG00000006380	SNRNP200	99	90.418	Panthera_tigris_altaica
ENSSDUG00000021410	snrnp200	99	90.637	ENSPTRG00000012230	SNRNP200	99	90.747	Pan_troglodytes
ENSSDUG00000021410	snrnp200	99	90.590	ENSPANG00000006017	SNRNP200	99	90.700	Papio_anubis
ENSSDUG00000021410	snrnp200	100	95.321	ENSPKIG00000014762	snrnp200	99	95.403	Paramormyrops_kingsleyae
ENSSDUG00000021410	snrnp200	99	89.705	ENSPSIG00000008580	SNRNP200	99	89.765	Pelodiscus_sinensis
ENSSDUG00000021410	snrnp200	99	90.543	ENSPCIG00000023050	SNRNP200	99	90.606	Phascolarctos_cinereus
ENSSDUG00000021410	snrnp200	100	97.239	ENSPFOG00000015110	snrnp200	100	97.239	Poecilia_formosa
ENSSDUG00000021410	snrnp200	97	97.415	ENSPLAG00000006711	snrnp200	99	97.415	Poecilia_latipinna
ENSSDUG00000021410	snrnp200	97	97.360	ENSPMEG00000021166	snrnp200	99	97.360	Poecilia_mexicana
ENSSDUG00000021410	snrnp200	100	97.191	ENSPREG00000008875	snrnp200	100	97.191	Poecilia_reticulata
ENSSDUG00000021410	snrnp200	99	90.637	ENSPPYG00000012068	SNRNP200	99	90.747	Pongo_abelii
ENSSDUG00000021410	snrnp200	97	94.872	ENSPCAG00000008536	SNRNP200	85	97.872	Procavia_capensis
ENSSDUG00000021410	snrnp200	99	90.637	ENSPCOG00000024608	SNRNP200	99	90.747	Propithecus_coquereli
ENSSDUG00000021410	snrnp200	96	90.993	ENSPVAG00000005860	SNRNP200	92	91.237	Pteropus_vampyrus
ENSSDUG00000021410	snrnp200	100	92.997	ENSPNYG00000017476	snrnp200	100	92.997	Pundamilia_nyererei
ENSSDUG00000021410	snrnp200	100	90.828	ENSPNAG00000010998	snrnp200	99	90.883	Pygocentrus_nattereri
ENSSDUG00000021410	snrnp200	99	90.684	ENSRNOG00000012157	Snrnp200	99	90.794	Rattus_norvegicus
ENSSDUG00000021410	snrnp200	99	90.637	ENSRBIG00000044690	-	99	90.747	Rhinopithecus_bieti
ENSSDUG00000021410	snrnp200	99	90.637	ENSRROG00000037952	-	99	90.747	Rhinopithecus_roxellana
ENSSDUG00000021410	snrnp200	99	90.590	ENSSBOG00000035471	SNRNP200	99	90.700	Saimiri_boliviensis_boliviensis
ENSSDUG00000021410	snrnp200	97	90.373	ENSSHAG00000000758	SNRNP200	99	90.444	Sarcophilus_harrisii
ENSSDUG00000021410	snrnp200	99	95.583	ENSSFOG00015018826	snrnp200	99	95.583	Scleropages_formosus
ENSSDUG00000021410	snrnp200	100	98.549	ENSSMAG00000005463	snrnp200	100	98.549	Scophthalmus_maximus
ENSSDUG00000021410	snrnp200	100	99.625	ENSSLDG00000010884	snrnp200	100	99.625	Seriola_lalandi_dorsalis
ENSSDUG00000021410	snrnp200	95	88.740	ENSSARG00000010728	SNRNP200	96	88.710	Sorex_araneus
ENSSDUG00000021410	snrnp200	99	90.918	ENSSPUG00000003726	-	99	90.982	Sphenodon_punctatus
ENSSDUG00000021410	snrnp200	100	99.391	ENSSPAG00000001842	snrnp200	100	99.391	Stegastes_partitus
ENSSDUG00000021410	snrnp200	99	90.730	ENSSSCG00000008127	SNRNP200	99	90.841	Sus_scrofa
ENSSDUG00000021410	snrnp200	99	82.331	ENSTGUG00000014475	-	100	82.331	Taeniopygia_guttata
ENSSDUG00000021410	snrnp200	100	97.238	ENSTRUG00000001307	snrnp200	100	97.238	Takifugu_rubripes
ENSSDUG00000021410	snrnp200	99	85.040	ENSTNIG00000004320	snrnp200	100	85.040	Tetraodon_nigroviridis
ENSSDUG00000021410	snrnp200	82	93.427	ENSTBEG00000003329	-	67	93.427	Tupaia_belangeri
ENSSDUG00000021410	snrnp200	99	90.496	ENSTTRG00000004983	SNRNP200	99	90.606	Tursiops_truncatus
ENSSDUG00000021410	snrnp200	75	83.721	ENSUAMG00000008395	-	95	83.430	Ursus_americanus
ENSSDUG00000021410	snrnp200	99	90.730	ENSUMAG00000012385	SNRNP200	99	90.841	Ursus_maritimus
ENSSDUG00000021410	snrnp200	87	93.568	ENSVPAG00000006434	SNRNP200	66	93.568	Vicugna_pacos
ENSSDUG00000021410	snrnp200	99	90.518	ENSVVUG00000026247	SNRNP200	99	90.628	Vulpes_vulpes
ENSSDUG00000021410	snrnp200	99	90.365	ENSXETG00000001243	snrnp200	99	90.427	Xenopus_tropicalis
ENSSDUG00000021410	snrnp200	97	97.535	ENSXMAG00000002058	snrnp200	98	97.535	Xiphophorus_maculatus