EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000021491 (Gene tree)
Gene ID: 111225241
Gene Symbol: cnot1
Alias: cdc39-like|im:7141761|kiaa1007l|wu:fc58h04|zgc:152902
Full Name: CCR4-NOT transcription complex subunit 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 20978 bases
Position: chrBDQW01000147.1:1431505-1452482
Accession: 111225241
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000029848	Not1	PF04054.15	3.7e-153	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000030360	-	6936	XM_022749989	ENSSDUP00000029848	2311 (aa)	XP_022605710	-

Gene Model

Click here to download ENSSDUG00000021491's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021491's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021491	cnot1	100	96.914	ENSG00000125107	CNOT1	100	100.000	Homo_sapiens
ENSSDUG00000021491	cnot1	100	98.356	ENSAPOG00000005042	cnot1	100	98.356	Acanthochromis_polyacanthus
ENSSDUG00000021491	cnot1	100	96.914	ENSAMEG00000017298	CNOT1	97	96.914	Ailuropoda_melanoleuca
ENSSDUG00000021491	cnot1	90	98.036	ENSACIG00000016003	cnot1	97	98.036	Amphilophus_citrinellus
ENSSDUG00000021491	cnot1	100	93.811	ENSAPEG00000022342	cnot1	100	93.811	Amphiprion_percula
ENSSDUG00000021491	cnot1	100	98.660	ENSATEG00000012892	cnot1	100	98.660	Anabas_testudineus
ENSSDUG00000021491	cnot1	100	95.938	ENSAPLG00000007162	CNOT1	97	96.919	Anas_platyrhynchos
ENSSDUG00000021491	cnot1	90	95.732	ENSACAG00000001602	CNOT1	95	95.732	Anolis_carolinensis
ENSSDUG00000021491	cnot1	100	89.034	ENSANAG00000038198	CNOT1	97	89.339	Aotus_nancymaae
ENSSDUG00000021491	cnot1	100	96.677	ENSACLG00000014234	cnot1	100	96.677	Astatotilapia_calliptera
ENSSDUG00000021491	cnot1	100	92.385	ENSAMXG00000013170	cnot1	100	92.427	Astyanax_mexicanus
ENSSDUG00000021491	cnot1	100	96.914	ENSBTAG00000020782	CNOT1	97	96.914	Bos_taurus
ENSSDUG00000021491	cnot1	74	44.202	WBGene00002845	let-711	92	54.008	Caenorhabditis_elegans
ENSSDUG00000021491	cnot1	100	96.914	ENSCJAG00000011318	CNOT1	97	96.914	Callithrix_jacchus
ENSSDUG00000021491	cnot1	100	95.961	ENSCAFG00000008426	CNOT1	97	95.961	Canis_familiaris
ENSSDUG00000021491	cnot1	100	94.685	ENSCAFG00020010156	CNOT1	97	94.685	Canis_lupus_dingo
ENSSDUG00000021491	cnot1	100	96.914	ENSCHIG00000010452	CNOT1	97	96.914	Capra_hircus
ENSSDUG00000021491	cnot1	100	96.914	ENSTSYG00000006888	CNOT1	97	96.914	Carlito_syrichta
ENSSDUG00000021491	cnot1	100	97.055	ENSCPOG00000013026	CNOT1	97	97.055	Cavia_porcellus
ENSSDUG00000021491	cnot1	100	96.914	ENSCCAG00000026333	CNOT1	97	96.914	Cebus_capucinus
ENSSDUG00000021491	cnot1	100	96.914	ENSCATG00000032625	CNOT1	97	96.914	Cercocebus_atys
ENSSDUG00000021491	cnot1	100	97.055	ENSCLAG00000006289	CNOT1	97	97.055	Chinchilla_lanigera
ENSSDUG00000021491	cnot1	100	96.914	ENSCSAG00000004731	CNOT1	97	96.914	Chlorocebus_sabaeus
ENSSDUG00000021491	cnot1	79	97.727	ENSCHOG00000009712	CNOT1	80	97.173	Choloepus_hoffmanni
ENSSDUG00000021491	cnot1	98	96.774	ENSCPBG00000026222	CNOT1	96	96.774	Chrysemys_picta_bellii
ENSSDUG00000021491	cnot1	100	57.024	ENSCING00000009149	-	100	56.953	Ciona_intestinalis
ENSSDUG00000021491	cnot1	89	77.159	ENSCSAVG00000002414	-	97	77.159	Ciona_savignyi
ENSSDUG00000021491	cnot1	100	95.972	ENSCANG00000040534	CNOT1	97	95.972	Colobus_angolensis_palliatus
ENSSDUG00000021491	cnot1	100	96.774	ENSCGRG00001016365	Cnot1	97	96.774	Cricetulus_griseus_chok1gshd
ENSSDUG00000021491	cnot1	100	96.774	ENSCGRG00000001714	Cnot1	97	96.774	Cricetulus_griseus_crigri
ENSSDUG00000021491	cnot1	100	94.782	ENSCVAG00000018930	cnot1	100	94.351	Cyprinodon_variegatus
ENSSDUG00000021491	cnot1	100	91.233	ENSDARG00000004174	cnot1	100	90.730	Danio_rerio
ENSSDUG00000021491	cnot1	100	94.118	ENSDNOG00000013250	CNOT1	97	94.118	Dasypus_novemcinctus
ENSSDUG00000021491	cnot1	99	45.480	FBgn0085436	Not1	99	47.180	Drosophila_melanogaster
ENSSDUG00000021491	cnot1	86	94.729	ENSETEG00000012806	CNOT1	84	94.729	Echinops_telfairi
ENSSDUG00000021491	cnot1	83	76.190	ENSEBUG00000011534	cnot1	95	76.190	Eptatretus_burgeri
ENSSDUG00000021491	cnot1	100	96.914	ENSEASG00005005819	CNOT1	97	96.914	Equus_asinus_asinus
ENSSDUG00000021491	cnot1	100	96.914	ENSECAG00000009889	CNOT1	97	96.914	Equus_caballus
ENSSDUG00000021491	cnot1	87	98.667	ENSEEUG00000006015	CNOT1	85	98.667	Erinaceus_europaeus
ENSSDUG00000021491	cnot1	100	96.730	ENSELUG00000014085	cnot1	97	96.730	Esox_lucius
ENSSDUG00000021491	cnot1	100	95.972	ENSFCAG00000025155	CNOT1	97	96.914	Felis_catus
ENSSDUG00000021491	cnot1	100	96.914	ENSFALG00000007285	CNOT1	97	96.914	Ficedula_albicollis
ENSSDUG00000021491	cnot1	100	97.055	ENSFDAG00000013399	CNOT1	97	97.055	Fukomys_damarensis
ENSSDUG00000021491	cnot1	100	92.695	ENSFHEG00000020574	cnot1	100	92.653	Fundulus_heteroclitus
ENSSDUG00000021491	cnot1	90	99.385	ENSGMOG00000012864	cnot1	99	99.385	Gadus_morhua
ENSSDUG00000021491	cnot1	100	96.914	ENSGALG00000002301	CNOT1	97	96.914	Gallus_gallus
ENSSDUG00000021491	cnot1	100	98.878	ENSGAFG00000015005	cnot1	97	98.878	Gambusia_affinis
ENSSDUG00000021491	cnot1	90	93.930	ENSGACG00000002606	cnot1	99	93.930	Gasterosteus_aculeatus
ENSSDUG00000021491	cnot1	100	96.774	ENSGAGG00000022646	CNOT1	97	96.774	Gopherus_agassizii
ENSSDUG00000021491	cnot1	100	96.914	ENSGGOG00000009547	CNOT1	97	96.914	Gorilla_gorilla
ENSSDUG00000021491	cnot1	100	96.972	ENSHBUG00000001729	cnot1	100	96.972	Haplochromis_burtoni
ENSSDUG00000021491	cnot1	100	97.055	ENSHGLG00000014322	CNOT1	97	97.055	Heterocephalus_glaber_female
ENSSDUG00000021491	cnot1	100	93.049	ENSHCOG00000006501	cnot1	100	93.049	Hippocampus_comes
ENSSDUG00000021491	cnot1	100	90.306	ENSIPUG00000011915	cnot1	100	90.264	Ictalurus_punctatus
ENSSDUG00000021491	cnot1	100	97.055	ENSSTOG00000005490	CNOT1	97	97.055	Ictidomys_tridecemlineatus
ENSSDUG00000021491	cnot1	100	96.353	ENSJJAG00000000633	Cnot1	97	96.353	Jaculus_jaculus
ENSSDUG00000021491	cnot1	100	93.538	ENSKMAG00000006149	cnot1	100	92.950	Kryptolebias_marmoratus
ENSSDUG00000021491	cnot1	91	98.603	ENSLBEG00000004740	cnot1	94	98.603	Labrus_bergylta
ENSSDUG00000021491	cnot1	100	96.914	ENSLACG00000010869	CNOT1	99	96.914	Latimeria_chalumnae
ENSSDUG00000021491	cnot1	100	99.299	ENSLOCG00000006324	cnot1	97	99.299	Lepisosteus_oculatus
ENSSDUG00000021491	cnot1	100	96.774	ENSLAFG00000000098	CNOT1	97	96.774	Loxodonta_africana
ENSSDUG00000021491	cnot1	100	96.914	ENSMFAG00000035888	CNOT1	97	96.914	Macaca_fascicularis
ENSSDUG00000021491	cnot1	100	96.914	ENSMMUG00000014625	CNOT1	97	96.914	Macaca_mulatta
ENSSDUG00000021491	cnot1	100	95.972	ENSMNEG00000031820	CNOT1	97	96.914	Macaca_nemestrina
ENSSDUG00000021491	cnot1	100	92.361	ENSMLEG00000040933	CNOT1	97	92.361	Mandrillus_leucophaeus
ENSSDUG00000021491	cnot1	100	92.502	ENSMAMG00000016524	cnot1	100	92.502	Mastacembelus_armatus
ENSSDUG00000021491	cnot1	100	94.864	ENSMZEG00005016210	cnot1	100	94.864	Maylandia_zebra
ENSSDUG00000021491	cnot1	100	96.914	ENSMGAG00000001908	CNOT1	97	96.914	Meleagris_gallopavo
ENSSDUG00000021491	cnot1	100	96.914	ENSMICG00000007071	CNOT1	97	96.914	Microcebus_murinus
ENSSDUG00000021491	cnot1	100	96.774	ENSMOCG00000017969	Cnot1	97	96.774	Microtus_ochrogaster
ENSSDUG00000021491	cnot1	100	97.318	ENSMMOG00000019134	cnot1	100	97.318	Mola_mola
ENSSDUG00000021491	cnot1	100	95.938	ENSMODG00000014199	CNOT1	97	96.919	Monodelphis_domestica
ENSSDUG00000021491	cnot1	100	92.800	ENSMALG00000008645	cnot1	100	92.800	Monopterus_albus
ENSSDUG00000021491	cnot1	98	96.190	MGP_CAROLIEiJ_G0031430	Cnot1	92	96.190	Mus_caroli
ENSSDUG00000021491	cnot1	100	96.774	ENSMUSG00000036550	Cnot1	97	96.774	Mus_musculus
ENSSDUG00000021491	cnot1	100	96.774	MGP_PahariEiJ_G0023028	Cnot1	97	96.774	Mus_pahari
ENSSDUG00000021491	cnot1	100	96.774	MGP_SPRETEiJ_G0032549	Cnot1	97	96.774	Mus_spretus
ENSSDUG00000021491	cnot1	100	96.914	ENSMPUG00000004830	CNOT1	97	96.914	Mustela_putorius_furo
ENSSDUG00000021491	cnot1	100	96.774	ENSMLUG00000003728	CNOT1	97	96.774	Myotis_lucifugus
ENSSDUG00000021491	cnot1	100	96.914	ENSNGAG00000018628	Cnot1	97	96.914	Nannospalax_galili
ENSSDUG00000021491	cnot1	97	96.054	ENSNBRG00000019358	cnot1	100	96.054	Neolamprologus_brichardi
ENSSDUG00000021491	cnot1	100	96.914	ENSNLEG00000003566	CNOT1	97	96.914	Nomascus_leucogenys
ENSSDUG00000021491	cnot1	86	91.723	ENSMEUG00000006145	CNOT1	84	91.759	Notamacropus_eugenii
ENSSDUG00000021491	cnot1	85	97.333	ENSOPRG00000005604	CNOT1	83	97.333	Ochotona_princeps
ENSSDUG00000021491	cnot1	100	97.055	ENSODEG00000016337	CNOT1	97	97.055	Octodon_degus
ENSSDUG00000021491	cnot1	100	93.456	ENSONIG00000007358	cnot1	100	93.289	Oreochromis_niloticus
ENSSDUG00000021491	cnot1	90	96.107	ENSOANG00000012109	CNOT1	97	96.634	Ornithorhynchus_anatinus
ENSSDUG00000021491	cnot1	100	96.914	ENSOCUG00000006911	CNOT1	97	96.914	Oryctolagus_cuniculus
ENSSDUG00000021491	cnot1	100	92.776	ENSORLG00000013734	cnot1	100	92.986	Oryzias_latipes
ENSSDUG00000021491	cnot1	100	91.039	ENSORLG00020017012	cnot1	100	91.039	Oryzias_latipes_hni
ENSSDUG00000021491	cnot1	100	90.913	ENSORLG00015007091	cnot1	100	90.913	Oryzias_latipes_hsok
ENSSDUG00000021491	cnot1	100	91.226	ENSOMEG00000015124	cnot1	100	90.806	Oryzias_melastigma
ENSSDUG00000021491	cnot1	100	96.914	ENSOGAG00000000543	CNOT1	97	96.914	Otolemur_garnettii
ENSSDUG00000021491	cnot1	100	96.914	ENSOARG00000001567	CNOT1	97	96.914	Ovis_aries
ENSSDUG00000021491	cnot1	100	96.914	ENSPPAG00000022013	CNOT1	97	96.914	Pan_paniscus
ENSSDUG00000021491	cnot1	100	96.914	ENSPPRG00000004867	CNOT1	97	96.914	Panthera_pardus
ENSSDUG00000021491	cnot1	100	96.914	ENSPTIG00000012589	CNOT1	97	96.914	Panthera_tigris_altaica
ENSSDUG00000021491	cnot1	100	95.972	ENSPTRG00000008183	CNOT1	97	95.972	Pan_troglodytes
ENSSDUG00000021491	cnot1	100	86.924	ENSPANG00000020901	CNOT1	100	87.117	Papio_anubis
ENSSDUG00000021491	cnot1	99	89.119	ENSPKIG00000002914	CNOT1	99	89.119	Paramormyrops_kingsleyae
ENSSDUG00000021491	cnot1	100	98.317	ENSPKIG00000023538	CNOT1	97	98.317	Paramormyrops_kingsleyae
ENSSDUG00000021491	cnot1	100	96.914	ENSPSIG00000005499	CNOT1	97	96.914	Pelodiscus_sinensis
ENSSDUG00000021491	cnot1	100	74.392	ENSPMAG00000009381	cnot1	100	74.225	Petromyzon_marinus
ENSSDUG00000021491	cnot1	100	97.055	ENSPCIG00000007343	CNOT1	97	97.055	Phascolarctos_cinereus
ENSSDUG00000021491	cnot1	99	92.086	ENSPFOG00000003497	cnot1	100	92.044	Poecilia_formosa
ENSSDUG00000021491	cnot1	95	98.004	ENSPLAG00000014018	cnot1	100	98.004	Poecilia_latipinna
ENSSDUG00000021491	cnot1	95	98.004	ENSPMEG00000005868	cnot1	100	98.004	Poecilia_mexicana
ENSSDUG00000021491	cnot1	95	98.004	ENSPREG00000018793	cnot1	100	98.004	Poecilia_reticulata
ENSSDUG00000021491	cnot1	100	96.914	ENSPPYG00000007410	CNOT1	97	96.914	Pongo_abelii
ENSSDUG00000021491	cnot1	88	93.662	ENSPCAG00000003241	CNOT1	86	93.662	Procavia_capensis
ENSSDUG00000021491	cnot1	100	95.972	ENSPCOG00000027139	CNOT1	97	95.972	Propithecus_coquereli
ENSSDUG00000021491	cnot1	100	89.621	ENSPVAG00000004243	CNOT1	97	89.621	Pteropus_vampyrus
ENSSDUG00000021491	cnot1	100	96.929	ENSPNYG00000012919	cnot1	100	96.929	Pundamilia_nyererei
ENSSDUG00000021491	cnot1	100	91.035	ENSPNAG00000000246	cnot1	100	91.035	Pygocentrus_nattereri
ENSSDUG00000021491	cnot1	100	96.634	ENSRNOG00000012271	Cnot1	97	96.634	Rattus_norvegicus
ENSSDUG00000021491	cnot1	100	95.972	ENSRBIG00000044598	CNOT1	97	95.972	Rhinopithecus_bieti
ENSSDUG00000021491	cnot1	100	96.914	ENSRROG00000000906	CNOT1	97	96.914	Rhinopithecus_roxellana
ENSSDUG00000021491	cnot1	56	34.074	YCR093W	CDC39	60	34.074	Saccharomyces_cerevisiae
ENSSDUG00000021491	cnot1	100	92.149	ENSSBOG00000029155	CNOT1	97	92.149	Saimiri_boliviensis_boliviensis
ENSSDUG00000021491	cnot1	100	97.055	ENSSHAG00000012187	CNOT1	97	97.055	Sarcophilus_harrisii
ENSSDUG00000021491	cnot1	100	93.039	ENSSFOG00015017614	cnot1	97	92.915	Scleropages_formosus
ENSSDUG00000021491	cnot1	100	97.841	ENSSMAG00000013844	cnot1	100	97.841	Scophthalmus_maximus
ENSSDUG00000021491	cnot1	100	99.611	ENSSLDG00000014816	cnot1	100	99.611	Seriola_lalandi_dorsalis
ENSSDUG00000021491	cnot1	86	97.600	ENSSARG00000000762	CNOT1	88	97.600	Sorex_araneus
ENSSDUG00000021491	cnot1	100	93.687	ENSSPAG00000018802	cnot1	100	93.687	Stegastes_partitus
ENSSDUG00000021491	cnot1	100	96.774	ENSSSCG00000002799	CNOT1	97	96.774	Sus_scrofa
ENSSDUG00000021491	cnot1	100	96.914	ENSTGUG00000005919	CNOT1	97	96.914	Taeniopygia_guttata
ENSSDUG00000021491	cnot1	100	99.018	ENSTNIG00000018706	cnot1	97	99.018	Tetraodon_nigroviridis
ENSSDUG00000021491	cnot1	80	97.887	ENSTBEG00000000720	CNOT1	77	97.887	Tupaia_belangeri
ENSSDUG00000021491	cnot1	95	96.914	ENSTTRG00000008460	CNOT1	92	96.914	Tursiops_truncatus
ENSSDUG00000021491	cnot1	100	96.914	ENSUAMG00000009251	CNOT1	97	96.914	Ursus_americanus
ENSSDUG00000021491	cnot1	100	96.914	ENSUMAG00000021291	CNOT1	97	96.914	Ursus_maritimus
ENSSDUG00000021491	cnot1	97	93.548	ENSVPAG00000008846	CNOT1	94	93.548	Vicugna_pacos
ENSSDUG00000021491	cnot1	100	94.685	ENSVVUG00000024037	CNOT1	97	94.685	Vulpes_vulpes
ENSSDUG00000021491	cnot1	100	89.216	ENSXETG00000015900	cnot1	97	89.216	Xenopus_tropicalis
ENSSDUG00000021491	cnot1	100	91.337	ENSXCOG00000013552	cnot1	100	91.253	Xiphophorus_couchianus
ENSSDUG00000021491	cnot1	100	91.379	ENSXMAG00000006031	cnot1	100	91.295	Xiphophorus_maculatus