EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000021823 (Gene tree)
Gene ID: 111230050
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 3782 bases
Position: chrBDQW01000017.1:5858587-5862368
Accession: 111230050
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000030286	LSM	PF01423.22	4.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000030810	-	2222	XM_022756606	ENSSDUP00000030286	133 (aa)	XP_022612327	UPI000BBE311C

Gene Model

Click here to download ENSSDUG00000021823's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021823's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000021823	lsm1	53	33.803	ENSSDUG00000014702	lsm8	74	33.803

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021823	lsm1	100	84.211	ENSG00000175324	LSM1	100	84.211	Homo_sapiens
ENSSDUG00000021823	lsm1	100	96.992	ENSAPOG00000010833	lsm1	100	96.992	Acanthochromis_polyacanthus
ENSSDUG00000021823	lsm1	100	84.211	ENSAMEG00000011141	LSM1	100	84.211	Ailuropoda_melanoleuca
ENSSDUG00000021823	lsm1	58	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSSDUG00000021823	lsm1	100	96.992	ENSAOCG00000017997	-	100	96.992	Amphiprion_ocellaris
ENSSDUG00000021823	lsm1	100	96.992	ENSAOCG00000017096	lsm1	100	96.992	Amphiprion_ocellaris
ENSSDUG00000021823	lsm1	100	96.992	ENSAPEG00000011669	lsm1	100	96.992	Amphiprion_percula
ENSSDUG00000021823	lsm1	100	98.496	ENSATEG00000022266	lsm1	100	98.496	Anabas_testudineus
ENSSDUG00000021823	lsm1	100	84.211	ENSANAG00000027785	LSM1	100	84.211	Aotus_nancymaae
ENSSDUG00000021823	lsm1	100	97.744	ENSACLG00000011400	lsm1	100	97.744	Astatotilapia_calliptera
ENSSDUG00000021823	lsm1	100	81.955	ENSAMXG00000005441	lsm1	100	81.955	Astyanax_mexicanus
ENSSDUG00000021823	lsm1	100	83.459	ENSBTAG00000001612	LSM1	100	83.459	Bos_taurus
ENSSDUG00000021823	lsm1	87	50.000	WBGene00003076	lsm-1	90	50.000	Caenorhabditis_elegans
ENSSDUG00000021823	lsm1	100	83.459	ENSCJAG00000048015	LSM1	100	83.459	Callithrix_jacchus
ENSSDUG00000021823	lsm1	100	84.211	ENSCAFG00000006113	LSM1	100	84.211	Canis_familiaris
ENSSDUG00000021823	lsm1	100	84.211	ENSCAFG00020001822	LSM1	100	84.211	Canis_lupus_dingo
ENSSDUG00000021823	lsm1	100	84.211	ENSCHIG00000013194	LSM1	100	84.211	Capra_hircus
ENSSDUG00000021823	lsm1	100	84.211	ENSTSYG00000010394	LSM1	100	84.211	Carlito_syrichta
ENSSDUG00000021823	lsm1	100	84.211	ENSCPOG00000032671	LSM1	100	84.211	Cavia_porcellus
ENSSDUG00000021823	lsm1	100	84.211	ENSCCAG00000037171	LSM1	100	84.211	Cebus_capucinus
ENSSDUG00000021823	lsm1	100	84.211	ENSCATG00000020377	LSM1	100	84.211	Cercocebus_atys
ENSSDUG00000021823	lsm1	100	82.707	ENSCLAG00000001137	LSM1	100	82.707	Chinchilla_lanigera
ENSSDUG00000021823	lsm1	100	84.211	ENSCSAG00000015485	LSM1	100	84.211	Chlorocebus_sabaeus
ENSSDUG00000021823	lsm1	100	84.962	ENSCHOG00000006030	LSM1	100	84.962	Choloepus_hoffmanni
ENSSDUG00000021823	lsm1	95	79.528	ENSCPBG00000006569	LSM1	86	79.528	Chrysemys_picta_bellii
ENSSDUG00000021823	lsm1	98	62.879	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSSDUG00000021823	lsm1	100	84.211	ENSCANG00000019173	LSM1	100	84.211	Colobus_angolensis_palliatus
ENSSDUG00000021823	lsm1	100	83.459	ENSCGRG00001024560	-	100	83.459	Cricetulus_griseus_chok1gshd
ENSSDUG00000021823	lsm1	80	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSSDUG00000021823	lsm1	80	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSSDUG00000021823	lsm1	100	83.459	ENSCGRG00000006554	-	100	83.459	Cricetulus_griseus_crigri
ENSSDUG00000021823	lsm1	100	96.992	ENSCSEG00000008319	lsm1	92	96.992	Cynoglossus_semilaevis
ENSSDUG00000021823	lsm1	100	99.248	ENSCSEG00000010570	lsm1	92	99.248	Cynoglossus_semilaevis
ENSSDUG00000021823	lsm1	100	96.992	ENSCVAG00000003871	lsm1	100	96.992	Cyprinodon_variegatus
ENSSDUG00000021823	lsm1	100	81.203	ENSDARG00000043177	lsm1	100	81.203	Danio_rerio
ENSSDUG00000021823	lsm1	100	78.947	ENSDNOG00000030989	-	100	78.947	Dasypus_novemcinctus
ENSSDUG00000021823	lsm1	100	84.211	ENSDNOG00000046387	-	100	84.211	Dasypus_novemcinctus
ENSSDUG00000021823	lsm1	100	83.459	ENSDNOG00000032911	-	100	83.459	Dasypus_novemcinctus
ENSSDUG00000021823	lsm1	89	66.387	ENSDNOG00000046620	-	100	66.387	Dasypus_novemcinctus
ENSSDUG00000021823	lsm1	100	84.211	ENSDORG00000028172	Lsm1	100	84.211	Dipodomys_ordii
ENSSDUG00000021823	lsm1	93	59.677	FBgn0261067	LSm1	91	59.677	Drosophila_melanogaster
ENSSDUG00000021823	lsm1	100	83.459	ENSEASG00005016677	LSM1	100	83.459	Equus_asinus_asinus
ENSSDUG00000021823	lsm1	100	83.459	ENSECAG00000010461	LSM1	100	83.459	Equus_caballus
ENSSDUG00000021823	lsm1	72	77.083	ENSEEUG00000015181	LSM1	97	77.083	Erinaceus_europaeus
ENSSDUG00000021823	lsm1	100	76.692	ENSELUG00000023374	lsm1	100	76.692	Esox_lucius
ENSSDUG00000021823	lsm1	100	93.233	ENSELUG00000002322	lsm1	100	93.233	Esox_lucius
ENSSDUG00000021823	lsm1	100	84.211	ENSFCAG00000039335	LSM1	100	84.211	Felis_catus
ENSSDUG00000021823	lsm1	89	84.746	ENSFALG00000006723	LSM1	100	84.746	Ficedula_albicollis
ENSSDUG00000021823	lsm1	100	84.211	ENSFDAG00000007658	LSM1	100	84.211	Fukomys_damarensis
ENSSDUG00000021823	lsm1	100	96.992	ENSFHEG00000009556	lsm1	100	96.992	Fundulus_heteroclitus
ENSSDUG00000021823	lsm1	100	95.489	ENSGMOG00000016651	lsm1	98	95.489	Gadus_morhua
ENSSDUG00000021823	lsm1	100	84.211	ENSGALG00000003245	LSM1	100	84.211	Gallus_gallus
ENSSDUG00000021823	lsm1	100	96.992	ENSGAFG00000011355	lsm1	100	96.992	Gambusia_affinis
ENSSDUG00000021823	lsm1	100	96.241	ENSGACG00000011763	lsm1	98	96.241	Gasterosteus_aculeatus
ENSSDUG00000021823	lsm1	100	85.714	ENSGAGG00000024065	LSM1	100	85.714	Gopherus_agassizii
ENSSDUG00000021823	lsm1	100	84.211	ENSGGOG00000022658	LSM1	100	84.211	Gorilla_gorilla
ENSSDUG00000021823	lsm1	100	97.744	ENSHBUG00000010897	lsm1	100	97.744	Haplochromis_burtoni
ENSSDUG00000021823	lsm1	100	69.173	ENSHGLG00000017574	-	100	69.173	Heterocephalus_glaber_female
ENSSDUG00000021823	lsm1	100	84.211	ENSHGLG00000005711	LSM1	100	84.211	Heterocephalus_glaber_female
ENSSDUG00000021823	lsm1	100	84.211	ENSHGLG00100017660	LSM1	100	84.211	Heterocephalus_glaber_male
ENSSDUG00000021823	lsm1	100	69.173	ENSHGLG00100012152	-	100	69.173	Heterocephalus_glaber_male
ENSSDUG00000021823	lsm1	100	96.241	ENSHCOG00000017233	lsm1	100	96.241	Hippocampus_comes
ENSSDUG00000021823	lsm1	100	81.203	ENSIPUG00000002312	LSM1	100	81.203	Ictalurus_punctatus
ENSSDUG00000021823	lsm1	58	92.208	ENSSTOG00000026870	LSM1	94	92.208	Ictidomys_tridecemlineatus
ENSSDUG00000021823	lsm1	100	83.459	ENSJJAG00000014605	-	100	83.459	Jaculus_jaculus
ENSSDUG00000021823	lsm1	100	98.496	ENSKMAG00000003016	lsm1	100	98.496	Kryptolebias_marmoratus
ENSSDUG00000021823	lsm1	100	97.744	ENSLBEG00000022352	lsm1	100	97.744	Labrus_bergylta
ENSSDUG00000021823	lsm1	90	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSSDUG00000021823	lsm1	100	86.466	ENSLOCG00000015149	lsm1	100	86.466	Lepisosteus_oculatus
ENSSDUG00000021823	lsm1	100	84.211	ENSLAFG00000003534	LSM1	100	84.211	Loxodonta_africana
ENSSDUG00000021823	lsm1	100	84.211	ENSMFAG00000032661	LSM1	100	84.211	Macaca_fascicularis
ENSSDUG00000021823	lsm1	100	84.211	ENSMLEG00000034535	LSM1	100	84.211	Mandrillus_leucophaeus
ENSSDUG00000021823	lsm1	100	97.744	ENSMAMG00000007464	lsm1	100	97.744	Mastacembelus_armatus
ENSSDUG00000021823	lsm1	100	97.744	ENSMZEG00005010321	lsm1	100	97.744	Maylandia_zebra
ENSSDUG00000021823	lsm1	100	84.211	ENSMGAG00000002125	LSM1	100	84.211	Meleagris_gallopavo
ENSSDUG00000021823	lsm1	100	83.459	ENSMICG00000030726	LSM1	100	83.459	Microcebus_murinus
ENSSDUG00000021823	lsm1	100	83.459	ENSMOCG00000022817	Lsm1	100	83.459	Microtus_ochrogaster
ENSSDUG00000021823	lsm1	100	96.992	ENSMMOG00000015466	lsm1	100	96.992	Mola_mola
ENSSDUG00000021823	lsm1	100	84.962	ENSMODG00000010732	-	100	84.962	Monodelphis_domestica
ENSSDUG00000021823	lsm1	58	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSSDUG00000021823	lsm1	100	84.211	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	Mus_caroli
ENSSDUG00000021823	lsm1	100	84.211	ENSMUSG00000037296	Lsm1	100	84.211	Mus_musculus
ENSSDUG00000021823	lsm1	100	84.211	MGP_PahariEiJ_G0021400	Lsm1	100	84.211	Mus_pahari
ENSSDUG00000021823	lsm1	100	84.211	MGP_SPRETEiJ_G0032049	Lsm1	100	84.211	Mus_spretus
ENSSDUG00000021823	lsm1	100	84.962	ENSMPUG00000009883	LSM1	100	84.962	Mustela_putorius_furo
ENSSDUG00000021823	lsm1	100	84.211	ENSMLUG00000003734	LSM1	100	84.211	Myotis_lucifugus
ENSSDUG00000021823	lsm1	100	83.459	ENSNGAG00000003753	Lsm1	100	83.459	Nannospalax_galili
ENSSDUG00000021823	lsm1	58	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSSDUG00000021823	lsm1	100	84.211	ENSNLEG00000029390	LSM1	100	84.211	Nomascus_leucogenys
ENSSDUG00000021823	lsm1	100	84.962	ENSMEUG00000014077	LSM1	100	84.962	Notamacropus_eugenii
ENSSDUG00000021823	lsm1	88	80.342	ENSOPRG00000000333	LSM1	100	80.342	Ochotona_princeps
ENSSDUG00000021823	lsm1	100	84.211	ENSODEG00000004834	LSM1	100	84.211	Octodon_degus
ENSSDUG00000021823	lsm1	100	97.744	ENSONIG00000010782	lsm1	100	97.744	Oreochromis_niloticus
ENSSDUG00000021823	lsm1	100	84.211	ENSOANG00000003256	LSM1	100	84.211	Ornithorhynchus_anatinus
ENSSDUG00000021823	lsm1	100	84.211	ENSOCUG00000015399	LSM1	100	84.211	Oryctolagus_cuniculus
ENSSDUG00000021823	lsm1	100	96.992	ENSORLG00000030288	lsm1	100	96.992	Oryzias_latipes
ENSSDUG00000021823	lsm1	100	95.489	ENSORLG00020006213	-	86	95.489	Oryzias_latipes_hni
ENSSDUG00000021823	lsm1	100	96.992	ENSORLG00020003941	lsm1	100	96.992	Oryzias_latipes_hni
ENSSDUG00000021823	lsm1	100	96.992	ENSORLG00015018350	lsm1	100	96.992	Oryzias_latipes_hsok
ENSSDUG00000021823	lsm1	100	98.496	ENSOMEG00000012454	lsm1	100	98.496	Oryzias_melastigma
ENSSDUG00000021823	lsm1	100	84.211	ENSOGAG00000015161	LSM1	100	84.211	Otolemur_garnettii
ENSSDUG00000021823	lsm1	100	84.211	ENSOARG00000001317	LSM1	100	84.211	Ovis_aries
ENSSDUG00000021823	lsm1	100	84.211	ENSPPAG00000032279	LSM1	100	84.211	Pan_paniscus
ENSSDUG00000021823	lsm1	100	84.211	ENSPPRG00000014172	-	100	84.211	Panthera_pardus
ENSSDUG00000021823	lsm1	100	84.211	ENSPTIG00000010289	LSM1	100	84.211	Panthera_tigris_altaica
ENSSDUG00000021823	lsm1	100	84.211	ENSPTRG00000020169	LSM1	100	84.211	Pan_troglodytes
ENSSDUG00000021823	lsm1	100	84.211	ENSPANG00000008814	LSM1	100	84.211	Papio_anubis
ENSSDUG00000021823	lsm1	100	86.466	ENSPKIG00000001839	lsm1	100	86.466	Paramormyrops_kingsleyae
ENSSDUG00000021823	lsm1	100	78.947	ENSPKIG00000019409	LSM1	99	78.947	Paramormyrops_kingsleyae
ENSSDUG00000021823	lsm1	98	80.000	ENSPSIG00000012563	LSM1	99	80.000	Pelodiscus_sinensis
ENSSDUG00000021823	lsm1	58	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSSDUG00000021823	lsm1	85	72.566	ENSPMAG00000002671	lsm1	100	72.566	Petromyzon_marinus
ENSSDUG00000021823	lsm1	100	84.962	ENSPCIG00000008880	LSM1	100	84.962	Phascolarctos_cinereus
ENSSDUG00000021823	lsm1	100	96.992	ENSPFOG00000016029	lsm1	100	96.992	Poecilia_formosa
ENSSDUG00000021823	lsm1	100	96.992	ENSPLAG00000007879	lsm1	100	96.992	Poecilia_latipinna
ENSSDUG00000021823	lsm1	100	96.992	ENSPMEG00000023550	lsm1	100	96.992	Poecilia_mexicana
ENSSDUG00000021823	lsm1	100	96.992	ENSPREG00000009574	lsm1	100	96.992	Poecilia_reticulata
ENSSDUG00000021823	lsm1	100	84.211	ENSPPYG00000018521	LSM1	100	84.211	Pongo_abelii
ENSSDUG00000021823	lsm1	100	84.211	ENSPCOG00000020901	-	100	84.211	Propithecus_coquereli
ENSSDUG00000021823	lsm1	100	84.211	ENSPVAG00000006016	LSM1	100	84.211	Pteropus_vampyrus
ENSSDUG00000021823	lsm1	100	97.744	ENSPNYG00000018067	lsm1	100	97.744	Pundamilia_nyererei
ENSSDUG00000021823	lsm1	100	81.203	ENSPNAG00000013707	lsm1	100	81.203	Pygocentrus_nattereri
ENSSDUG00000021823	lsm1	100	82.707	ENSRNOG00000015375	Lsm1	100	82.707	Rattus_norvegicus
ENSSDUG00000021823	lsm1	100	84.211	ENSRBIG00000027449	LSM1	100	84.211	Rhinopithecus_bieti
ENSSDUG00000021823	lsm1	100	84.211	ENSRROG00000036074	LSM1	100	84.211	Rhinopithecus_roxellana
ENSSDUG00000021823	lsm1	80	41.593	YJL124C	LSM1	66	41.593	Saccharomyces_cerevisiae
ENSSDUG00000021823	lsm1	100	84.962	ENSSHAG00000017260	LSM1	100	84.962	Sarcophilus_harrisii
ENSSDUG00000021823	lsm1	100	86.466	ENSSFOG00015019528	lsm1	100	86.466	Scleropages_formosus
ENSSDUG00000021823	lsm1	100	98.496	ENSSMAG00000004930	lsm1	100	98.496	Scophthalmus_maximus
ENSSDUG00000021823	lsm1	100	100.000	ENSSLDG00000012154	lsm1	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000021823	lsm1	100	85.714	ENSSPUG00000014878	LSM1	100	85.714	Sphenodon_punctatus
ENSSDUG00000021823	lsm1	100	97.744	ENSSPAG00000020548	lsm1	100	97.744	Stegastes_partitus
ENSSDUG00000021823	lsm1	100	84.211	ENSSSCG00000039058	LSM1	100	84.211	Sus_scrofa
ENSSDUG00000021823	lsm1	100	86.466	ENSTGUG00000004793	LSM1	100	86.466	Taeniopygia_guttata
ENSSDUG00000021823	lsm1	100	93.985	ENSTRUG00000025239	lsm1	100	93.985	Takifugu_rubripes
ENSSDUG00000021823	lsm1	100	91.729	ENSTNIG00000004055	lsm1	100	91.729	Tetraodon_nigroviridis
ENSSDUG00000021823	lsm1	88	82.051	ENSTBEG00000015884	LSM1	100	82.051	Tupaia_belangeri
ENSSDUG00000021823	lsm1	100	84.211	ENSTTRG00000004482	LSM1	100	84.211	Tursiops_truncatus
ENSSDUG00000021823	lsm1	100	84.211	ENSUAMG00000004103	LSM1	100	84.211	Ursus_americanus
ENSSDUG00000021823	lsm1	100	84.211	ENSUMAG00000009132	LSM1	100	84.211	Ursus_maritimus
ENSSDUG00000021823	lsm1	58	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSSDUG00000021823	lsm1	67	58.065	ENSVVUG00000014880	-	99	58.065	Vulpes_vulpes
ENSSDUG00000021823	lsm1	100	84.211	ENSVVUG00000020191	LSM1	100	84.211	Vulpes_vulpes
ENSSDUG00000021823	lsm1	100	80.292	ENSXETG00000009004	lsm1	100	80.292	Xenopus_tropicalis
ENSSDUG00000021823	lsm1	100	96.992	ENSXCOG00000015631	lsm1	100	96.992	Xiphophorus_couchianus
ENSSDUG00000021823	lsm1	100	96.992	ENSXMAG00000026637	lsm1	100	96.992	Xiphophorus_maculatus