EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000021864 (Gene tree)
Gene ID: 111238737
Gene Symbol: -
Alias: -
Full Name: probable ribonuclease ZC3H12C
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 16191 bases
Position: chrBDQW01001556.1:541861-558051
Accession: 111238737
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000030346	RNase_Zc3h12a	PF11977.8	1.5e-65	1	1
ENSSDUP00000030355	RNase_Zc3h12a	PF11977.8	1.5e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000030872	-	6719	-	ENSSDUP00000030346	974 (aa)	-	UPI000BBEFF1A
ENSSDUT00000030881	-	6594	XM_022768402	ENSSDUP00000030355	974 (aa)	XP_022624123	UPI000BBEFF1A

Gene Model

Click here to download ENSSDUG00000021864's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021864's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000021864	-	85	44.807	ENSSDUG00000014078	zc3h12b	86	69.565
ENSSDUG00000021864	-	84	49.483	ENSSDUG00000013237	-	90	64.901

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021864	-	83	49.243	ENSAPOG00000001632	-	87	70.190	Acanthochromis_polyacanthus
ENSSDUG00000021864	-	79	88.342	ENSAPOG00000015355	-	83	87.435	Acanthochromis_polyacanthus
ENSSDUG00000021864	-	100	72.643	ENSACIG00000001362	-	97	73.873	Amphilophus_citrinellus
ENSSDUG00000021864	-	99	88.284	ENSAOCG00000003866	-	98	90.370	Amphiprion_ocellaris
ENSSDUG00000021864	-	100	81.045	ENSAPEG00000005727	-	99	88.848	Amphiprion_percula
ENSSDUG00000021864	-	72	82.361	ENSAPEG00000018582	-	99	88.136	Amphiprion_percula
ENSSDUG00000021864	-	100	88.422	ENSATEG00000004134	-	100	88.730	Anabas_testudineus
ENSSDUG00000021864	-	72	49.738	ENSATEG00000002260	-	91	74.809	Anabas_testudineus
ENSSDUG00000021864	-	100	85.553	ENSACLG00000027924	-	100	85.758	Astatotilapia_calliptera
ENSSDUG00000021864	-	56	52.915	ENSCPBG00000018492	ZC3H12A	54	66.447	Chrysemys_picta_bellii
ENSSDUG00000021864	-	86	81.759	ENSCSEG00000010073	-	96	86.667	Cynoglossus_semilaevis
ENSSDUG00000021864	-	83	47.529	ENSCSEG00000008542	-	99	43.285	Cynoglossus_semilaevis
ENSSDUG00000021864	-	100	76.410	ENSCVAG00000002328	-	100	76.000	Cyprinodon_variegatus
ENSSDUG00000021864	-	75	65.696	ENSELUG00000005470	-	100	48.242	Esox_lucius
ENSSDUG00000021864	-	84	56.870	ENSELUG00000009319	-	97	54.976	Esox_lucius
ENSSDUG00000021864	-	91	87.500	ENSFHEG00000021225	-	100	87.500	Fundulus_heteroclitus
ENSSDUG00000021864	-	72	47.488	ENSGMOG00000017975	-	100	61.818	Gadus_morhua
ENSSDUG00000021864	-	100	76.181	ENSGAFG00000005290	-	100	75.975	Gambusia_affinis
ENSSDUG00000021864	-	65	61.224	ENSGACG00000001339	-	99	61.224	Gasterosteus_aculeatus
ENSSDUG00000021864	-	72	73.257	ENSGACG00000014201	-	100	83.333	Gasterosteus_aculeatus
ENSSDUG00000021864	-	100	85.348	ENSHBUG00000006831	-	100	85.553	Haplochromis_burtoni
ENSSDUG00000021864	-	100	64.585	ENSHCOG00000008878	-	100	65.768	Hippocampus_comes
ENSSDUG00000021864	-	100	77.073	ENSKMAG00000011694	-	100	78.096	Kryptolebias_marmoratus
ENSSDUG00000021864	-	97	82.421	ENSLBEG00000012554	-	99	87.392	Labrus_bergylta
ENSSDUG00000021864	-	100	82.895	ENSLBEG00000003547	-	100	83.300	Labrus_bergylta
ENSSDUG00000021864	-	83	49.104	ENSMAMG00000020372	-	99	44.673	Mastacembelus_armatus
ENSSDUG00000021864	-	99	81.828	ENSMAMG00000021794	-	98	91.852	Mastacembelus_armatus
ENSSDUG00000021864	-	100	85.451	ENSMZEG00005007718	-	100	85.656	Maylandia_zebra
ENSSDUG00000021864	-	96	78.312	ENSMMOG00000005728	-	99	86.027	Mola_mola
ENSSDUG00000021864	-	86	47.636	ENSMMOG00000019526	-	93	44.290	Mola_mola
ENSSDUG00000021864	-	100	84.939	ENSMALG00000010501	-	100	85.143	Monopterus_albus
ENSSDUG00000021864	-	100	85.041	ENSNBRG00000006978	-	100	85.451	Neolamprologus_brichardi
ENSSDUG00000021864	-	100	86.066	ENSONIG00000012268	-	99	88.333	Oreochromis_niloticus
ENSSDUG00000021864	-	86	78.452	ENSORLG00000029243	-	99	78.199	Oryzias_latipes
ENSSDUG00000021864	-	100	74.847	ENSORLG00020017005	-	100	75.256	Oryzias_latipes_hni
ENSSDUG00000021864	-	100	74.438	ENSORLG00015015211	-	100	74.338	Oryzias_latipes_hsok
ENSSDUG00000021864	-	100	75.873	ENSOMEG00000006666	-	100	76.797	Oryzias_melastigma
ENSSDUG00000021864	-	66	79.299	ENSPMGG00000009790	-	98	78.981	Periophthalmus_magnuspinnatus
ENSSDUG00000021864	-	56	59.073	ENSPMGG00000020126	-	50	58.947	Periophthalmus_magnuspinnatus
ENSSDUG00000021864	-	100	77.254	ENSPLAG00000009867	-	100	76.844	Poecilia_latipinna
ENSSDUG00000021864	-	100	77.949	ENSPMEG00000006624	-	100	77.152	Poecilia_mexicana
ENSSDUG00000021864	-	86	66.667	ENSPMEG00000011676	-	99	41.399	Poecilia_mexicana
ENSSDUG00000021864	-	83	47.236	ENSPREG00000001607	-	73	79.386	Poecilia_reticulata
ENSSDUG00000021864	-	100	77.515	ENSPREG00000010838	-	100	76.899	Poecilia_reticulata
ENSSDUG00000021864	-	100	87.807	ENSSMAG00000007545	-	100	87.615	Scophthalmus_maximus
ENSSDUG00000021864	-	100	98.460	ENSSLDG00000012268	-	100	98.460	Seriola_lalandi_dorsalis
ENSSDUG00000021864	-	83	49.590	ENSSLDG00000004886	-	99	46.244	Seriola_lalandi_dorsalis
ENSSDUG00000021864	-	100	89.959	ENSSPAG00000009485	-	100	89.344	Stegastes_partitus
ENSSDUG00000021864	-	99	45.544	ENSSPAG00000001850	-	99	46.004	Stegastes_partitus
ENSSDUG00000021864	-	99	78.395	ENSTRUG00000022519	-	99	79.115	Takifugu_rubripes
ENSSDUG00000021864	-	62	77.355	ENSTNIG00000014519	-	98	86.667	Tetraodon_nigroviridis
ENSSDUG00000021864	-	83	47.066	ENSXMAG00000014715	-	83	80.870	Xiphophorus_maculatus
ENSSDUG00000021864	-	100	76.797	ENSXMAG00000027171	-	100	76.386	Xiphophorus_maculatus