EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000021883 (Gene tree)
Gene ID: -
Gene Symbol: slirp
Alias: sb:cb657|si:ch73-276n11.1
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3035 bases
Position: chrBDQW01000149.1:24775841-24778875
Accession: 111226167
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000030374	RRM_1	PF00076.22	1.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000030900	-	1067	XM_022751272	ENSSDUP00000030374	152 (aa)	XP_022606993	-

Gene Model

Click here to download ENSSDUG00000021883's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021883's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000021883	slirp	56	34.568	ENSSDUG00000002394	-	83	34.568
ENSSDUG00000021883	slirp	62	32.222	ENSSDUG00000010792	hnrnpd	50	32.222

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021883	slirp	55	54.762	ENSG00000119705	SLIRP	92	61.429	Homo_sapiens
ENSSDUG00000021883	slirp	66	83.000	ENSAPOG00000001298	slirp	100	83.000	Acanthochromis_polyacanthus
ENSSDUG00000021883	slirp	64	78.571	ENSACIG00000023083	slirp	97	78.571	Amphilophus_citrinellus
ENSSDUG00000021883	slirp	64	82.653	ENSAOCG00000006342	slirp	99	82.653	Amphiprion_ocellaris
ENSSDUG00000021883	slirp	64	82.653	ENSAPEG00000015917	slirp	99	82.653	Amphiprion_percula
ENSSDUG00000021883	slirp	64	82.474	ENSAPEG00000015719	-	99	82.474	Amphiprion_percula
ENSSDUG00000021883	slirp	66	73.000	ENSATEG00000013525	slirp	100	73.000	Anabas_testudineus
ENSSDUG00000021883	slirp	64	62.245	ENSAMXG00000018693	slirp	98	62.245	Astyanax_mexicanus
ENSSDUG00000021883	slirp	55	54.762	ENSCJAG00000016946	SLIRP	72	62.687	Callithrix_jacchus
ENSSDUG00000021883	slirp	59	56.180	ENSCAFG00020015876	-	80	56.180	Canis_lupus_dingo
ENSSDUG00000021883	slirp	56	55.172	ENSCATG00000036327	SLIRP	80	55.172	Cercocebus_atys
ENSSDUG00000021883	slirp	53	60.494	ENSCPBG00000026327	SLIRP	82	60.494	Chrysemys_picta_bellii
ENSSDUG00000021883	slirp	58	50.000	ENSCGRG00001024068	Slirp	81	50.000	Cricetulus_griseus_chok1gshd
ENSSDUG00000021883	slirp	58	50.000	ENSCGRG00000017440	Slirp	81	50.000	Cricetulus_griseus_crigri
ENSSDUG00000021883	slirp	55	64.286	ENSCSEG00000015766	slirp	86	64.286	Cynoglossus_semilaevis
ENSSDUG00000021883	slirp	59	77.778	ENSCVAG00000012504	slirp	86	77.778	Cyprinodon_variegatus
ENSSDUG00000021883	slirp	62	73.404	ENSDARG00000097753	slirp	94	73.196	Danio_rerio
ENSSDUG00000021883	slirp	54	51.220	ENSDNOG00000007721	SLIRP	83	48.352	Dasypus_novemcinctus
ENSSDUG00000021883	slirp	50	56.579	ENSDORG00000012379	Slirp	68	56.579	Dipodomys_ordii
ENSSDUG00000021883	slirp	50	52.632	ENSETEG00000010345	SLIRP	70	52.632	Echinops_telfairi
ENSSDUG00000021883	slirp	59	55.056	ENSEASG00005020193	SLIRP	80	55.056	Equus_asinus_asinus
ENSSDUG00000021883	slirp	58	49.438	ENSEEUG00000007257	SLIRP	88	49.438	Erinaceus_europaeus
ENSSDUG00000021883	slirp	63	76.042	ENSELUG00000016800	slirp	95	76.042	Esox_lucius
ENSSDUG00000021883	slirp	51	52.564	ENSFALG00000012583	SLIRP	85	48.889	Ficedula_albicollis
ENSSDUG00000021883	slirp	56	55.172	ENSFDAG00000008347	SLIRP	77	55.172	Fukomys_damarensis
ENSSDUG00000021883	slirp	51	79.487	ENSFHEG00000004709	slirp	85	79.487	Fundulus_heteroclitus
ENSSDUG00000021883	slirp	64	80.412	ENSGMOG00000016948	slirp	93	80.412	Gadus_morhua
ENSSDUG00000021883	slirp	55	52.326	ENSGALG00000031238	SLIRP	87	52.326	Gallus_gallus
ENSSDUG00000021883	slirp	66	77.000	ENSGAFG00000010998	slirp	100	77.000	Gambusia_affinis
ENSSDUG00000021883	slirp	55	89.157	ENSGACG00000020137	slirp	97	89.157	Gasterosteus_aculeatus
ENSSDUG00000021883	slirp	72	57.658	ENSGAGG00000009953	SLIRP	74	57.658	Gopherus_agassizii
ENSSDUG00000021883	slirp	55	54.762	ENSGGOG00000011059	-	73	61.765	Gorilla_gorilla
ENSSDUG00000021883	slirp	59	48.315	ENSHGLG00000018491	SLIRP	80	48.315	Heterocephalus_glaber_female
ENSSDUG00000021883	slirp	59	48.315	ENSHGLG00100014153	SLIRP	80	48.315	Heterocephalus_glaber_male
ENSSDUG00000021883	slirp	63	80.208	ENSHCOG00000006795	slirp	97	80.208	Hippocampus_comes
ENSSDUG00000021883	slirp	64	72.449	ENSIPUG00000010214	SLIRP	98	72.449	Ictalurus_punctatus
ENSSDUG00000021883	slirp	59	52.222	ENSSTOG00000034316	SLIRP	81	52.222	Ictidomys_tridecemlineatus
ENSSDUG00000021883	slirp	66	65.000	ENSKMAG00000002038	slirp	96	65.000	Kryptolebias_marmoratus
ENSSDUG00000021883	slirp	66	73.000	ENSLBEG00000007564	slirp	100	73.000	Labrus_bergylta
ENSSDUG00000021883	slirp	64	70.103	ENSLACG00000013434	SLIRP	93	70.103	Latimeria_chalumnae
ENSSDUG00000021883	slirp	56	55.294	ENSMMUG00000029256	SLIRP	72	62.687	Macaca_mulatta
ENSSDUG00000021883	slirp	84	65.354	ENSMAMG00000016076	slirp	58	65.354	Mastacembelus_armatus
ENSSDUG00000021883	slirp	64	83.673	ENSMZEG00005004617	slirp	99	83.673	Maylandia_zebra
ENSSDUG00000021883	slirp	59	51.111	ENSMAUG00000003857	Slirp	81	51.111	Mesocricetus_auratus
ENSSDUG00000021883	slirp	59	53.333	ENSMICG00000012080	SLIRP	80	53.333	Microcebus_murinus
ENSSDUG00000021883	slirp	66	81.000	ENSMMOG00000018268	slirp	100	81.000	Mola_mola
ENSSDUG00000021883	slirp	66	76.000	ENSMALG00000012581	slirp	100	76.000	Monopterus_albus
ENSSDUG00000021883	slirp	57	53.409	MGP_CAROLIEiJ_G0017995	Slirp	81	53.409	Mus_caroli
ENSSDUG00000021883	slirp	55	55.952	ENSMLUG00000029544	-	74	55.952	Myotis_lucifugus
ENSSDUG00000021883	slirp	58	52.273	ENSMLUG00000024998	-	79	52.273	Myotis_lucifugus
ENSSDUG00000021883	slirp	57	50.000	ENSNGAG00000016363	Slirp	85	50.000	Nannospalax_galili
ENSSDUG00000021883	slirp	55	50.000	ENSNLEG00000032459	-	73	55.882	Nomascus_leucogenys
ENSSDUG00000021883	slirp	64	84.694	ENSONIG00000011692	slirp	99	84.694	Oreochromis_niloticus
ENSSDUG00000021883	slirp	59	56.667	ENSOANG00000022366	SLIRP	81	56.667	Ornithorhynchus_anatinus
ENSSDUG00000021883	slirp	68	79.612	ENSORLG00000010761	slirp	80	79.612	Oryzias_latipes
ENSSDUG00000021883	slirp	66	82.000	ENSORLG00020022188	slirp	100	82.000	Oryzias_latipes_hni
ENSSDUG00000021883	slirp	65	80.808	ENSORLG00015020171	slirp	98	80.808	Oryzias_latipes_hsok
ENSSDUG00000021883	slirp	66	82.000	ENSOMEG00000019321	slirp	100	82.000	Oryzias_melastigma
ENSSDUG00000021883	slirp	55	54.762	ENSPPAG00000040710	-	73	61.765	Pan_paniscus
ENSSDUG00000021883	slirp	55	54.762	ENSPTRG00000030691	SLIRP	73	61.765	Pan_troglodytes
ENSSDUG00000021883	slirp	55	57.647	ENSPANG00000026323	SLIRP	72	64.179	Papio_anubis
ENSSDUG00000021883	slirp	53	81.250	ENSPMGG00000010541	slirp	92	81.250	Periophthalmus_magnuspinnatus
ENSSDUG00000021883	slirp	58	50.562	ENSPEMG00000013234	Slirp	78	50.562	Peromyscus_maniculatus_bairdii
ENSSDUG00000021883	slirp	56	52.941	ENSPMAG00000009355	slirp	94	52.941	Petromyzon_marinus
ENSSDUG00000021883	slirp	57	45.977	ENSPCIG00000026842	-	94	45.977	Phascolarctos_cinereus
ENSSDUG00000021883	slirp	64	78.571	ENSPFOG00000006758	slirp	98	78.571	Poecilia_formosa
ENSSDUG00000021883	slirp	64	77.551	ENSPLAG00000011140	slirp	98	77.551	Poecilia_latipinna
ENSSDUG00000021883	slirp	64	78.571	ENSPMEG00000019535	slirp	98	78.571	Poecilia_mexicana
ENSSDUG00000021883	slirp	64	77.551	ENSPREG00000011673	slirp	98	77.551	Poecilia_reticulata
ENSSDUG00000021883	slirp	56	55.172	ENSPPYG00000006030	SLIRP	81	54.545	Pongo_abelii
ENSSDUG00000021883	slirp	59	42.222	ENSPCOG00000015159	SLIRP	65	58.571	Propithecus_coquereli
ENSSDUG00000021883	slirp	64	78.571	ENSPNAG00000008633	slirp	99	78.571	Pygocentrus_nattereri
ENSSDUG00000021883	slirp	55	55.952	ENSSBOG00000020014	SLIRP	73	63.235	Saimiri_boliviensis_boliviensis
ENSSDUG00000021883	slirp	56	68.235	ENSSFOG00015011165	slirp	86	68.235	Scleropages_formosus
ENSSDUG00000021883	slirp	66	52.941	ENSSMAG00000012930	slirp	100	52.941	Scophthalmus_maximus
ENSSDUG00000021883	slirp	72	97.273	ENSSLDG00000023136	slirp	100	97.273	Seriola_lalandi_dorsalis
ENSSDUG00000021883	slirp	60	57.732	ENSSPUG00000009346	SLIRP	99	57.732	Sphenodon_punctatus
ENSSDUG00000021883	slirp	66	73.000	ENSSPAG00000013477	slirp	100	73.000	Stegastes_partitus
ENSSDUG00000021883	slirp	68	49.515	ENSSSCG00000028167	SLIRP	88	49.515	Sus_scrofa
ENSSDUG00000021883	slirp	51	53.846	ENSTGUG00000012337	SLIRP	87	47.826	Taeniopygia_guttata
ENSSDUG00000021883	slirp	64	79.798	ENSTRUG00000020127	slirp	98	79.798	Takifugu_rubripes
ENSSDUG00000021883	slirp	59	55.056	ENSUMAG00000007166	SLIRP	80	55.056	Ursus_maritimus
ENSSDUG00000021883	slirp	65	52.000	ENSVPAG00000001781	SLIRP	88	52.000	Vicugna_pacos
ENSSDUG00000021883	slirp	58	54.444	ENSVVUG00000004436	SLIRP	81	54.444	Vulpes_vulpes
ENSSDUG00000021883	slirp	54	73.171	ENSXETG00000030343	SLIRP	92	73.171	Xenopus_tropicalis
ENSSDUG00000021883	slirp	66	77.000	ENSXCOG00000009422	slirp	100	77.000	Xiphophorus_couchianus
ENSSDUG00000021883	slirp	66	79.000	ENSXMAG00000015655	slirp	100	79.000	Xiphophorus_maculatus