EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000021968 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 123621 bases
Position: chrBDQW01002637.1:51212-174832
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000030505	RRM_1	PF00076.22	4.4e-26	1	2
ENSSDUP00000030505	RRM_1	PF00076.22	4.4e-26	2	2
ENSSDUP00000030498	RRM_1	PF00076.22	5.3e-26	1	2
ENSSDUP00000030498	RRM_1	PF00076.22	5.3e-26	2	2
ENSSDUP00000030516	RRM_1	PF00076.22	2.9e-23	1	2
ENSSDUP00000030516	RRM_1	PF00076.22	2.9e-23	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000031026	-	904	-	ENSSDUP00000030498	173 (aa)	-	-
ENSSDUT00000031044	-	1002	-	ENSSDUP00000030516	333 (aa)	-	-
ENSSDUT00000031033	-	1132	-	ENSSDUP00000030505	152 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000021968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000021968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000021968	-	89	51.111	ENSSDUG00000004787	hnrnpaba	66	41.333
ENSSDUG00000021968	-	89	49.630	ENSSDUG00000010792	hnrnpd	53	49.630
ENSSDUG00000021968	-	99	94.040	ENSSDUG00000014507	msi2a	100	84.478
ENSSDUG00000021968	-	86	40.152	ENSSDUG00000000381	hnrnpa3	97	33.684
ENSSDUG00000021968	-	99	76.316	ENSSDUG00000022697	-	97	69.329
ENSSDUG00000021968	-	99	78.808	ENSSDUG00000001027	MSI1	100	62.500
ENSSDUG00000021968	-	86	34.848	ENSSDUG00000002431	-	80	34.848
ENSSDUG00000021968	-	91	46.552	ENSSDUG00000013908	hnrnpa1a	89	41.135
ENSSDUG00000021968	-	86	37.500	ENSSDUG00000002394	-	86	37.500
ENSSDUG00000021968	-	95	46.622	ENSSDUG00000009050	-	69	41.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000021968	-	99	92.053	ENSG00000153944	MSI2	100	85.987	Homo_sapiens
ENSSDUG00000021968	-	99	94.040	ENSAPOG00000001658	msi2a	100	84.478	Acanthochromis_polyacanthus
ENSSDUG00000021968	-	86	95.385	ENSAMEG00000002697	MSI2	99	85.987	Ailuropoda_melanoleuca
ENSSDUG00000021968	-	99	84.106	ENSACIG00000009475	msi2a	82	87.645	Amphilophus_citrinellus
ENSSDUG00000021968	-	99	76.667	ENSAOCG00000014822	msi2a	69	78.231	Amphiprion_ocellaris
ENSSDUG00000021968	-	99	94.040	ENSAPEG00000007706	msi2a	100	84.478	Amphiprion_percula
ENSSDUG00000021968	-	99	94.040	ENSATEG00000010498	msi2a	100	84.478	Anabas_testudineus
ENSSDUG00000021968	-	86	97.030	ENSATEG00000003301	-	100	91.319	Anabas_testudineus
ENSSDUG00000021968	-	86	94.505	ENSACAG00000005452	MSI2	69	87.879	Anolis_carolinensis
ENSSDUG00000021968	-	99	92.053	ENSANAG00000037827	MSI2	100	83.728	Aotus_nancymaae
ENSSDUG00000021968	-	99	94.040	ENSACLG00000007752	msi2a	100	84.179	Astatotilapia_calliptera
ENSSDUG00000021968	-	99	95.364	ENSAMXG00000032796	msi2a	100	85.841	Astyanax_mexicanus
ENSSDUG00000021968	-	99	94.702	ENSAMXG00000010474	msi2b	97	89.542	Astyanax_mexicanus
ENSSDUG00000021968	-	99	89.404	ENSBTAG00000004406	MSI2	97	87.908	Bos_taurus
ENSSDUG00000021968	-	88	73.134	WBGene00003423	msi-1	68	73.134	Caenorhabditis_elegans
ENSSDUG00000021968	-	99	92.053	ENSCJAG00000013998	MSI2	100	83.728	Callithrix_jacchus
ENSSDUG00000021968	-	86	94.737	ENSCAFG00020025620	MSI2	81	86.120	Canis_lupus_dingo
ENSSDUG00000021968	-	99	89.404	ENSCHIG00000016580	MSI2	100	82.249	Capra_hircus
ENSSDUG00000021968	-	91	83.219	ENSCPOG00000034042	MSI2	99	82.877	Cavia_porcellus
ENSSDUG00000021968	-	99	92.053	ENSCCAG00000033927	MSI2	100	83.728	Cebus_capucinus
ENSSDUG00000021968	-	92	93.571	ENSCATG00000040879	MSI2	100	83.432	Cercocebus_atys
ENSSDUG00000021968	-	99	92.053	ENSCLAG00000014325	MSI2	100	82.370	Chinchilla_lanigera
ENSSDUG00000021968	-	99	92.053	ENSCSAG00000005633	MSI2	100	83.728	Chlorocebus_sabaeus
ENSSDUG00000021968	-	75	77.000	ENSCHOG00000008660	MSI2	83	88.235	Choloepus_hoffmanni
ENSSDUG00000021968	-	86	94.444	ENSCPBG00000009942	MSI2	96	81.395	Chrysemys_picta_bellii
ENSSDUG00000021968	-	86	80.851	ENSCING00000018579	-	97	46.753	Ciona_intestinalis
ENSSDUG00000021968	-	88	67.606	ENSCSAVG00000010397	-	62	67.606	Ciona_savignyi
ENSSDUG00000021968	-	86	95.385	ENSCANG00000036414	MSI2	100	85.987	Colobus_angolensis_palliatus
ENSSDUG00000021968	-	99	91.391	ENSCGRG00001013330	Msi2	100	83.186	Cricetulus_griseus_chok1gshd
ENSSDUG00000021968	-	86	95.385	ENSCGRG00000003141	Msi2	100	85.714	Cricetulus_griseus_crigri
ENSSDUG00000021968	-	79	68.932	ENSCSEG00000013557	msi2a	83	68.137	Cynoglossus_semilaevis
ENSSDUG00000021968	-	99	91.176	ENSCSEG00000013549	msi2a	77	91.176	Cynoglossus_semilaevis
ENSSDUG00000021968	-	99	92.647	ENSCSEG00000003266	-	100	80.838	Cynoglossus_semilaevis
ENSSDUG00000021968	-	99	94.040	ENSCVAG00000017075	msi2a	99	83.801	Cyprinodon_variegatus
ENSSDUG00000021968	-	99	96.026	ENSDARG00000032614	msi2b	100	100.000	Danio_rerio
ENSSDUG00000021968	-	99	90.066	ENSDARG00000033901	msi2a	100	71.392	Danio_rerio
ENSSDUG00000021968	-	86	94.595	ENSDNOG00000014501	MSI2	100	87.584	Dasypus_novemcinctus
ENSSDUG00000021968	-	79	75.845	ENSDORG00000005394	Msi2	84	75.362	Dipodomys_ordii
ENSSDUG00000021968	-	74	94.690	ENSDORG00000028440	-	100	94.690	Dipodomys_ordii
ENSSDUG00000021968	-	92	77.143	FBgn0260943	Rbp6	88	62.500	Drosophila_melanogaster
ENSSDUG00000021968	-	85	93.333	ENSETEG00000012450	-	64	69.079	Echinops_telfairi
ENSSDUG00000021968	-	77	80.342	ENSEBUG00000006732	msi2a	87	64.078	Eptatretus_burgeri
ENSSDUG00000021968	-	86	95.385	ENSEASG00005002965	MSI2	97	79.941	Equus_asinus_asinus
ENSSDUG00000021968	-	99	92.053	ENSECAG00000011435	MSI2	100	80.226	Equus_caballus
ENSSDUG00000021968	-	83	73.384	ENSEEUG00000007810	MSI2	100	72.624	Erinaceus_europaeus
ENSSDUG00000021968	-	99	94.737	ENSELUG00000001361	msi2b	100	84.438	Esox_lucius
ENSSDUG00000021968	-	99	96.026	ENSELUG00000011747	msi2a	100	85.373	Esox_lucius
ENSSDUG00000021968	-	99	76.821	ENSFCAG00000033787	-	83	74.522	Felis_catus
ENSSDUG00000021968	-	99	92.053	ENSFCAG00000041686	MSI2	100	83.728	Felis_catus
ENSSDUG00000021968	-	86	95.385	ENSFDAG00000016118	MSI2	100	85.987	Fukomys_damarensis
ENSSDUG00000021968	-	100	93.421	ENSFHEG00000000084	msi2a	96	94.040	Fundulus_heteroclitus
ENSSDUG00000021968	-	95	92.308	ENSGMOG00000007596	-	100	92.308	Gadus_morhua
ENSSDUG00000021968	-	99	92.715	ENSGALG00000005567	MSI2	100	83.526	Gallus_gallus
ENSSDUG00000021968	-	99	94.040	ENSGAFG00000006974	msi2a	91	94.079	Gambusia_affinis
ENSSDUG00000021968	-	99	84.868	ENSGAGG00000016542	MSI2	100	83.882	Gopherus_agassizii
ENSSDUG00000021968	-	86	95.385	ENSGGOG00000013182	MSI2	100	85.987	Gorilla_gorilla
ENSSDUG00000021968	-	99	94.040	ENSHBUG00000020800	msi2a	100	84.179	Haplochromis_burtoni
ENSSDUG00000021968	-	95	90.385	ENSHGLG00000012444	MSI2	100	73.988	Heterocephalus_glaber_female
ENSSDUG00000021968	-	75	94.737	ENSHGLG00100004028	-	87	94.737	Heterocephalus_glaber_male
ENSSDUG00000021968	-	76	83.575	ENSHGLG00100003744	MSI2	100	82.126	Heterocephalus_glaber_male
ENSSDUG00000021968	-	99	93.377	ENSHCOG00000000266	msi2a	97	80.178	Hippocampus_comes
ENSSDUG00000021968	-	99	79.470	ENSHCOG00000017241	-	73	81.600	Hippocampus_comes
ENSSDUG00000021968	-	99	96.026	ENSIPUG00000003732	msi2b	100	82.388	Ictalurus_punctatus
ENSSDUG00000021968	-	99	94.040	ENSIPUG00000021097	msi2a	100	85.075	Ictalurus_punctatus
ENSSDUG00000021968	-	91	83.219	ENSSTOG00000007884	MSI2	99	82.877	Ictidomys_tridecemlineatus
ENSSDUG00000021968	-	74	94.690	ENSJJAG00000009467	-	100	94.690	Jaculus_jaculus
ENSSDUG00000021968	-	76	78.392	ENSJJAG00000006292	-	100	78.392	Jaculus_jaculus
ENSSDUG00000021968	-	99	93.377	ENSKMAG00000009494	msi2a	96	83.025	Kryptolebias_marmoratus
ENSSDUG00000021968	-	86	88.119	ENSLBEG00000026223	-	81	83.962	Labrus_bergylta
ENSSDUG00000021968	-	99	94.074	ENSLBEG00000007061	msi2a	100	84.478	Labrus_bergylta
ENSSDUG00000021968	-	86	92.941	ENSLACG00000016798	MSI2	98	91.209	Latimeria_chalumnae
ENSSDUG00000021968	-	99	96.026	ENSLOCG00000004675	msi2b	100	86.992	Lepisosteus_oculatus
ENSSDUG00000021968	-	86	95.385	ENSMFAG00000003775	MSI2	100	85.987	Macaca_fascicularis
ENSSDUG00000021968	-	86	95.385	ENSMMUG00000002069	MSI2	100	85.987	Macaca_mulatta
ENSSDUG00000021968	-	99	92.053	ENSMNEG00000045275	MSI2	100	83.728	Macaca_nemestrina
ENSSDUG00000021968	-	86	95.385	ENSMLEG00000033888	MSI2	100	85.987	Mandrillus_leucophaeus
ENSSDUG00000021968	-	99	98.013	ENSMAMG00000002488	-	99	98.013	Mastacembelus_armatus
ENSSDUG00000021968	-	99	94.040	ENSMAMG00000010503	msi2a	100	83.929	Mastacembelus_armatus
ENSSDUG00000021968	-	99	94.040	ENSMZEG00005007676	msi2a	100	84.320	Maylandia_zebra
ENSSDUG00000021968	-	99	91.391	ENSMAUG00000003862	Msi2	100	81.844	Mesocricetus_auratus
ENSSDUG00000021968	-	99	92.053	ENSMICG00000013598	-	100	83.728	Microcebus_murinus
ENSSDUG00000021968	-	99	82.781	ENSMICG00000032913	-	100	66.962	Microcebus_murinus
ENSSDUG00000021968	-	99	91.391	ENSMOCG00000005820	Msi2	100	82.081	Microtus_ochrogaster
ENSSDUG00000021968	-	99	84.106	ENSMMOG00000008348	msi2a	93	83.226	Mola_mola
ENSSDUG00000021968	-	76	84.058	ENSMODG00000014790	MSI2	100	82.609	Monodelphis_domestica
ENSSDUG00000021968	-	99	94.040	ENSMALG00000000071	msi2a	100	82.421	Monopterus_albus
ENSSDUG00000021968	-	99	91.391	MGP_CAROLIEiJ_G0016948	Msi2	100	94.690	Mus_caroli
ENSSDUG00000021968	-	99	91.391	ENSMUSG00000069769	Msi2	100	94.690	Mus_musculus
ENSSDUG00000021968	-	99	91.391	MGP_PahariEiJ_G0018079	Msi2	100	94.690	Mus_pahari
ENSSDUG00000021968	-	99	91.391	MGP_SPRETEiJ_G0017795	Msi2	100	94.690	Mus_spretus
ENSSDUG00000021968	-	86	95.385	ENSMPUG00000015377	MSI2	97	87.582	Mustela_putorius_furo
ENSSDUG00000021968	-	86	94.615	ENSMLUG00000007865	MSI2	97	87.582	Myotis_lucifugus
ENSSDUG00000021968	-	99	91.391	ENSNGAG00000017807	Msi2	100	82.081	Nannospalax_galili
ENSSDUG00000021968	-	99	94.040	ENSNBRG00000014596	msi2a	92	94.040	Neolamprologus_brichardi
ENSSDUG00000021968	-	86	94.828	ENSNLEG00000008059	MSI2	100	86.174	Nomascus_leucogenys
ENSSDUG00000021968	-	86	96.721	ENSOPRG00000000872	-	64	80.921	Ochotona_princeps
ENSSDUG00000021968	-	99	92.053	ENSODEG00000011974	MSI2	100	82.370	Octodon_degus
ENSSDUG00000021968	-	99	94.040	ENSONIG00000001972	msi2a	84	94.040	Oreochromis_niloticus
ENSSDUG00000021968	-	97	88.514	ENSOANG00000005667	MSI2	72	90.558	Ornithorhynchus_anatinus
ENSSDUG00000021968	-	86	95.385	ENSOCUG00000010440	MSI2	97	87.582	Oryctolagus_cuniculus
ENSSDUG00000021968	-	99	94.040	ENSORLG00000009671	msi2a	100	82.388	Oryzias_latipes
ENSSDUG00000021968	-	99	94.040	ENSORLG00020021556	msi2a	100	82.388	Oryzias_latipes_hni
ENSSDUG00000021968	-	99	94.040	ENSORLG00015004592	msi2a	100	82.388	Oryzias_latipes_hsok
ENSSDUG00000021968	-	99	94.040	ENSOMEG00000000146	msi2a	97	87.622	Oryzias_melastigma
ENSSDUG00000021968	-	91	83.660	ENSOGAG00000005621	MSI2	99	82.951	Otolemur_garnettii
ENSSDUG00000021968	-	86	95.385	ENSPPAG00000037697	MSI2	100	85.987	Pan_paniscus
ENSSDUG00000021968	-	86	95.385	ENSPPRG00000001848	MSI2	94	87.582	Panthera_pardus
ENSSDUG00000021968	-	95	71.528	ENSPTIG00000021873	-	90	73.391	Panthera_tigris_altaica
ENSSDUG00000021968	-	86	94.828	ENSPTIG00000021678	MSI2	96	86.174	Panthera_tigris_altaica
ENSSDUG00000021968	-	86	95.385	ENSPTRG00000009437	MSI2	100	85.987	Pan_troglodytes
ENSSDUG00000021968	-	99	92.053	ENSPANG00000022319	MSI2	100	83.728	Papio_anubis
ENSSDUG00000021968	-	87	94.505	ENSPKIG00000017107	-	81	94.505	Paramormyrops_kingsleyae
ENSSDUG00000021968	-	99	92.715	ENSPKIG00000007038	-	100	76.389	Paramormyrops_kingsleyae
ENSSDUG00000021968	-	99	94.702	ENSPSIG00000008618	MSI2	81	90.909	Pelodiscus_sinensis
ENSSDUG00000021968	-	100	84.179	ENSPMGG00000005888	msi2a	100	83.881	Periophthalmus_magnuspinnatus
ENSSDUG00000021968	-	74	94.690	ENSPEMG00000021793	-	100	94.690	Peromyscus_maniculatus_bairdii
ENSSDUG00000021968	-	99	94.702	ENSPCIG00000006063	MSI2	100	81.638	Phascolarctos_cinereus
ENSSDUG00000021968	-	96	93.333	ENSPFOG00000019337	MSI2	91	93.333	Poecilia_formosa
ENSSDUG00000021968	-	94	90.210	ENSPLAG00000000436	msi2a	76	90.845	Poecilia_latipinna
ENSSDUG00000021968	-	94	79.720	ENSPMEG00000013247	msi2a	80	81.429	Poecilia_mexicana
ENSSDUG00000021968	-	99	94.040	ENSPREG00000000881	msi2a	99	82.090	Poecilia_reticulata
ENSSDUG00000021968	-	86	96.721	ENSPPYG00000008244	-	100	84.274	Pongo_abelii
ENSSDUG00000021968	-	87	60.484	ENSPCAG00000010552	MSI2	100	60.081	Procavia_capensis
ENSSDUG00000021968	-	86	95.385	ENSPCOG00000019195	-	93	95.385	Propithecus_coquereli
ENSSDUG00000021968	-	86	94.828	ENSPVAG00000017053	MSI2	100	80.198	Pteropus_vampyrus
ENSSDUG00000021968	-	99	94.040	ENSPNYG00000018393	msi2a	100	84.320	Pundamilia_nyererei
ENSSDUG00000021968	-	99	94.702	ENSPNAG00000000844	msi2b	100	85.714	Pygocentrus_nattereri
ENSSDUG00000021968	-	99	94.702	ENSPNAG00000014957	msi2a	100	86.136	Pygocentrus_nattereri
ENSSDUG00000021968	-	86	94.059	ENSRNOG00000025338	Msi2	100	87.153	Rattus_norvegicus
ENSSDUG00000021968	-	60	71.429	ENSRBIG00000032064	-	84	73.864	Rhinopithecus_bieti
ENSSDUG00000021968	-	86	94.737	ENSRROG00000034421	-	92	94.737	Rhinopithecus_roxellana
ENSSDUG00000021968	-	86	95.745	ENSSBOG00000026425	MSI2	100	85.987	Saimiri_boliviensis_boliviensis
ENSSDUG00000021968	-	86	96.124	ENSSHAG00000008672	MSI2	100	86.624	Sarcophilus_harrisii
ENSSDUG00000021968	-	99	74.510	ENSSFOG00015012168	msi2b	76	83.058	Scleropages_formosus
ENSSDUG00000021968	-	86	91.538	ENSSFOG00015021687	-	97	83.333	Scleropages_formosus
ENSSDUG00000021968	-	99	94.040	ENSSMAG00000018484	msi2a	100	84.179	Scophthalmus_maximus
ENSSDUG00000021968	-	60	84.615	ENSSLDG00000021332	-	68	97.727	Seriola_lalandi_dorsalis
ENSSDUG00000021968	-	99	94.040	ENSSLDG00000017172	msi2a	100	84.478	Seriola_lalandi_dorsalis
ENSSDUG00000021968	-	99	94.040	ENSSPUG00000000913	-	94	94.040	Sphenodon_punctatus
ENSSDUG00000021968	-	99	94.040	ENSSPAG00000017793	msi2a	100	79.070	Stegastes_partitus
ENSSDUG00000021968	-	99	92.053	ENSSSCG00000038505	MSI2	100	83.728	Sus_scrofa
ENSSDUG00000021968	-	76	84.541	ENSTGUG00000008452	MSI2	100	83.092	Taeniopygia_guttata
ENSSDUG00000021968	-	99	94.040	ENSTRUG00000021248	msi2a	100	82.609	Takifugu_rubripes
ENSSDUG00000021968	-	89	75.556	ENSTBEG00000001241	MSI2	73	71.967	Tupaia_belangeri
ENSSDUG00000021968	-	86	96.721	ENSTTRG00000002189	MSI2	100	79.435	Tursiops_truncatus
ENSSDUG00000021968	-	86	95.385	ENSUAMG00000000700	MSI2	97	87.582	Ursus_americanus
ENSSDUG00000021968	-	86	94.059	ENSUMAG00000000505	MSI2	95	80.364	Ursus_maritimus
ENSSDUG00000021968	-	86	94.828	ENSVPAG00000006837	-	62	80.769	Vicugna_pacos
ENSSDUG00000021968	-	99	94.737	ENSVVUG00000011783	MSI2	100	82.370	Vulpes_vulpes
ENSSDUG00000021968	-	99	92.053	ENSXCOG00000006113	msi2a	100	70.757	Xiphophorus_couchianus
ENSSDUG00000021968	-	99	94.040	ENSXMAG00000000608	msi2a	99	83.489	Xiphophorus_maculatus