EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000022083 (Gene tree)
Gene ID: 111238742
Gene Symbol: prpf4
Alias: mg:ab03a02|zgc:65943
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11918 bases
Position: chrBDQW01001588.1:170858-182775
Accession: 111238742
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000030654	PRP4	PF08799.11	2.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000031189	-	1886	XM_022768407	ENSSDUP00000030654	514 (aa)	XP_022624128	-

Gene Model

Click here to download ENSSDUG00000022083's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000022083's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000022083	prpf4	52	30.469	ENSSDUG00000008158	tbl3	56	30.469

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000022083	prpf4	98	73.705	ENSG00000136875	PRPF4	96	73.506	Homo_sapiens
ENSSDUG00000022083	prpf4	96	94.705	ENSAPOG00000014132	prpf4	99	94.705	Acanthochromis_polyacanthus
ENSSDUG00000022083	prpf4	98	73.705	ENSAMEG00000013048	PRPF4	94	73.506	Ailuropoda_melanoleuca
ENSSDUG00000022083	prpf4	94	95.031	ENSACIG00000005579	prpf4	99	95.031	Amphilophus_citrinellus
ENSSDUG00000022083	prpf4	94	94.824	ENSAOCG00000005457	prpf4	99	94.824	Amphiprion_ocellaris
ENSSDUG00000022083	prpf4	94	94.617	ENSAPEG00000000776	prpf4	99	94.617	Amphiprion_percula
ENSSDUG00000022083	prpf4	94	95.238	ENSATEG00000023013	prpf4	99	95.238	Anabas_testudineus
ENSSDUG00000022083	prpf4	98	73.861	ENSAPLG00000006534	PRPF4	94	73.663	Anas_platyrhynchos
ENSSDUG00000022083	prpf4	94	75.826	ENSACAG00000015110	PRPF4	97	75.413	Anolis_carolinensis
ENSSDUG00000022083	prpf4	98	73.705	ENSANAG00000022464	PRPF4	93	73.506	Aotus_nancymaae
ENSSDUG00000022083	prpf4	94	94.617	ENSACLG00000019031	prpf4	99	94.617	Astatotilapia_calliptera
ENSSDUG00000022083	prpf4	90	64.346	ENSAMXG00000006756	prpf4	94	72.878	Astyanax_mexicanus
ENSSDUG00000022083	prpf4	98	73.705	ENSBTAG00000004571	PRPF4	96	73.506	Bos_taurus
ENSSDUG00000022083	prpf4	87	43.681	WBGene00007972	prp-4	90	43.973	Caenorhabditis_elegans
ENSSDUG00000022083	prpf4	98	73.705	ENSCJAG00000017856	PRPF4	96	73.506	Callithrix_jacchus
ENSSDUG00000022083	prpf4	98	73.705	ENSCAFG00000003224	PRPF4	93	73.506	Canis_familiaris
ENSSDUG00000022083	prpf4	98	73.705	ENSCAFG00020022637	PRPF4	97	73.506	Canis_lupus_dingo
ENSSDUG00000022083	prpf4	98	73.705	ENSCHIG00000024648	-	96	73.506	Capra_hircus
ENSSDUG00000022083	prpf4	98	73.904	ENSTSYG00000010366	PRPF4	96	73.705	Carlito_syrichta
ENSSDUG00000022083	prpf4	81	68.735	ENSCAPG00000008935	PRPF4	97	68.735	Cavia_aperea
ENSSDUG00000022083	prpf4	98	68.327	ENSCPOG00000014729	-	96	68.127	Cavia_porcellus
ENSSDUG00000022083	prpf4	98	73.307	ENSCPOG00000010747	-	96	73.108	Cavia_porcellus
ENSSDUG00000022083	prpf4	98	73.506	ENSCCAG00000028990	PRPF4	96	73.307	Cebus_capucinus
ENSSDUG00000022083	prpf4	98	73.705	ENSCATG00000021552	PRPF4	96	73.506	Cercocebus_atys
ENSSDUG00000022083	prpf4	98	73.705	ENSCLAG00000013448	PRPF4	96	73.506	Chinchilla_lanigera
ENSSDUG00000022083	prpf4	83	76.235	ENSCHOG00000007233	PRPF4	100	76.235	Choloepus_hoffmanni
ENSSDUG00000022083	prpf4	99	73.031	ENSCPBG00000019136	PRPF4	73	72.835	Chrysemys_picta_bellii
ENSSDUG00000022083	prpf4	91	59.322	ENSCING00000001299	-	95	59.110	Ciona_intestinalis
ENSSDUG00000022083	prpf4	93	57.469	ENSCSAVG00000009178	-	100	58.904	Ciona_savignyi
ENSSDUG00000022083	prpf4	98	73.705	ENSCANG00000003246	PRPF4	96	73.506	Colobus_angolensis_palliatus
ENSSDUG00000022083	prpf4	98	73.506	ENSCGRG00001016992	Prpf4	96	73.307	Cricetulus_griseus_chok1gshd
ENSSDUG00000022083	prpf4	98	73.506	ENSCGRG00000017560	Prpf4	96	73.307	Cricetulus_griseus_crigri
ENSSDUG00000022083	prpf4	94	87.371	ENSCSEG00000020451	prpf4	99	87.164	Cynoglossus_semilaevis
ENSSDUG00000022083	prpf4	94	79.917	ENSDARG00000067639	prpf4	99	79.917	Danio_rerio
ENSSDUG00000022083	prpf4	93	76.310	ENSDNOG00000013203	PRPF4	96	76.101	Dasypus_novemcinctus
ENSSDUG00000022083	prpf4	98	73.904	ENSDORG00000026275	Prpf4	96	73.705	Dipodomys_ordii
ENSSDUG00000022083	prpf4	94	50.379	FBgn0036733	U4-U6-60K	99	50.379	Drosophila_melanogaster
ENSSDUG00000022083	prpf4	98	74.303	ENSETEG00000020389	PRPF4	96	74.104	Echinops_telfairi
ENSSDUG00000022083	prpf4	94	68.315	ENSEBUG00000015229	prpf4	88	68.764	Eptatretus_burgeri
ENSSDUG00000022083	prpf4	98	73.705	ENSEASG00005022678	PRPF4	96	73.506	Equus_asinus_asinus
ENSSDUG00000022083	prpf4	98	73.705	ENSECAG00000007072	PRPF4	96	73.506	Equus_caballus
ENSSDUG00000022083	prpf4	71	81.172	ENSEEUG00000007480	PRPF4	96	60.682	Erinaceus_europaeus
ENSSDUG00000022083	prpf4	94	81.366	ENSELUG00000007510	prpf4	99	81.366	Esox_lucius
ENSSDUG00000022083	prpf4	98	73.705	ENSFCAG00000005514	PRPF4	96	73.506	Felis_catus
ENSSDUG00000022083	prpf4	86	75.169	ENSFALG00000005423	PRPF4	85	75.395	Ficedula_albicollis
ENSSDUG00000022083	prpf4	98	73.705	ENSFDAG00000005839	PRPF4	96	73.506	Fukomys_damarensis
ENSSDUG00000022083	prpf4	94	91.097	ENSFHEG00000001300	prpf4	99	91.097	Fundulus_heteroclitus
ENSSDUG00000022083	prpf4	94	76.556	ENSGALG00000008857	PRPF4	94	73.767	Gallus_gallus
ENSSDUG00000022083	prpf4	90	89.666	ENSGAFG00000012164	prpf4	70	89.666	Gambusia_affinis
ENSSDUG00000022083	prpf4	94	82.062	ENSGACG00000015476	prpf4	99	81.856	Gasterosteus_aculeatus
ENSSDUG00000022083	prpf4	99	72.638	ENSGAGG00000025029	PRPF4	94	72.441	Gopherus_agassizii
ENSSDUG00000022083	prpf4	98	73.705	ENSGGOG00000006943	PRPF4	96	73.506	Gorilla_gorilla
ENSSDUG00000022083	prpf4	94	94.617	ENSHBUG00000000562	prpf4	100	94.617	Haplochromis_burtoni
ENSSDUG00000022083	prpf4	98	73.904	ENSHGLG00000015191	PRPF4	96	73.705	Heterocephalus_glaber_female
ENSSDUG00000022083	prpf4	97	59.000	ENSHGLG00000003838	-	93	58.800	Heterocephalus_glaber_female
ENSSDUG00000022083	prpf4	94	63.655	ENSHGLG00000016628	-	92	63.860	Heterocephalus_glaber_female
ENSSDUG00000022083	prpf4	97	59.000	ENSHGLG00100005571	-	93	58.800	Heterocephalus_glaber_male
ENSSDUG00000022083	prpf4	94	79.710	ENSIPUG00000017956	PRPF4	99	79.503	Ictalurus_punctatus
ENSSDUG00000022083	prpf4	98	73.705	ENSSTOG00000027833	PRPF4	96	73.506	Ictidomys_tridecemlineatus
ENSSDUG00000022083	prpf4	98	73.705	ENSJJAG00000008838	Prpf4	96	73.506	Jaculus_jaculus
ENSSDUG00000022083	prpf4	94	91.718	ENSKMAG00000013236	prpf4	99	91.718	Kryptolebias_marmoratus
ENSSDUG00000022083	prpf4	94	95.445	ENSLBEG00000020611	prpf4	99	95.445	Labrus_bergylta
ENSSDUG00000022083	prpf4	99	69.412	ENSLACG00000016317	PRPF4	97	69.216	Latimeria_chalumnae
ENSSDUG00000022083	prpf4	99	78.740	ENSLOCG00000000581	prpf4	99	78.740	Lepisosteus_oculatus
ENSSDUG00000022083	prpf4	98	73.705	ENSLAFG00000018225	PRPF4	96	73.506	Loxodonta_africana
ENSSDUG00000022083	prpf4	98	73.506	ENSMFAG00000039397	PRPF4	96	73.307	Macaca_fascicularis
ENSSDUG00000022083	prpf4	98	73.705	ENSMMUG00000005844	PRPF4	96	73.506	Macaca_mulatta
ENSSDUG00000022083	prpf4	98	64.940	ENSMNEG00000033737	PRPF4	96	64.741	Macaca_nemestrina
ENSSDUG00000022083	prpf4	98	73.705	ENSMLEG00000040284	PRPF4	96	73.506	Mandrillus_leucophaeus
ENSSDUG00000022083	prpf4	94	95.031	ENSMAMG00000020141	prpf4	99	95.031	Mastacembelus_armatus
ENSSDUG00000022083	prpf4	94	94.617	ENSMZEG00005023205	prpf4	99	94.617	Maylandia_zebra
ENSSDUG00000022083	prpf4	94	75.934	ENSMGAG00000001796	PRPF4	94	75.726	Meleagris_gallopavo
ENSSDUG00000022083	prpf4	98	73.506	ENSMAUG00000018022	Prpf4	96	73.307	Mesocricetus_auratus
ENSSDUG00000022083	prpf4	99	73.176	ENSMICG00000015022	PRPF4	97	72.978	Microcebus_murinus
ENSSDUG00000022083	prpf4	98	73.506	ENSMOCG00000018273	Prpf4	96	73.307	Microtus_ochrogaster
ENSSDUG00000022083	prpf4	94	91.097	ENSMMOG00000021177	prpf4	99	90.683	Mola_mola
ENSSDUG00000022083	prpf4	99	72.189	ENSMODG00000025096	-	94	71.992	Monodelphis_domestica
ENSSDUG00000022083	prpf4	99	72.978	ENSMODG00000004444	-	97	72.584	Monodelphis_domestica
ENSSDUG00000022083	prpf4	94	96.480	ENSMALG00000013624	prpf4	99	96.480	Monopterus_albus
ENSSDUG00000022083	prpf4	98	73.506	MGP_CAROLIEiJ_G0026078	Prpf4	96	73.307	Mus_caroli
ENSSDUG00000022083	prpf4	98	73.506	ENSMUSG00000066148	Prpf4	96	73.307	Mus_musculus
ENSSDUG00000022083	prpf4	98	73.705	MGP_PahariEiJ_G0028413	Prpf4	96	73.506	Mus_pahari
ENSSDUG00000022083	prpf4	98	73.506	MGP_SPRETEiJ_G0027042	Prpf4	96	73.307	Mus_spretus
ENSSDUG00000022083	prpf4	98	73.705	ENSMPUG00000007883	PRPF4	96	73.506	Mustela_putorius_furo
ENSSDUG00000022083	prpf4	93	75.262	ENSMLUG00000008626	-	94	75.052	Myotis_lucifugus
ENSSDUG00000022083	prpf4	98	73.506	ENSMLUG00000015309	-	93	73.307	Myotis_lucifugus
ENSSDUG00000022083	prpf4	98	68.526	ENSNGAG00000000468	Prpf4	96	68.327	Nannospalax_galili
ENSSDUG00000022083	prpf4	94	94.617	ENSNBRG00000007972	prpf4	99	94.617	Neolamprologus_brichardi
ENSSDUG00000022083	prpf4	98	73.705	ENSNLEG00000016647	PRPF4	96	73.506	Nomascus_leucogenys
ENSSDUG00000022083	prpf4	99	72.584	ENSMEUG00000013256	PRPF4	99	72.189	Notamacropus_eugenii
ENSSDUG00000022083	prpf4	97	73.800	ENSOPRG00000005302	PRPF4	96	73.705	Ochotona_princeps
ENSSDUG00000022083	prpf4	98	73.705	ENSODEG00000018147	PRPF4	96	73.506	Octodon_degus
ENSSDUG00000022083	prpf4	94	95.031	ENSONIG00000012671	prpf4	99	95.031	Oreochromis_niloticus
ENSSDUG00000022083	prpf4	98	73.705	ENSOCUG00000005046	PRPF4	96	73.506	Oryctolagus_cuniculus
ENSSDUG00000022083	prpf4	94	90.476	ENSORLG00000019641	prpf4	99	90.476	Oryzias_latipes
ENSSDUG00000022083	prpf4	94	90.476	ENSORLG00020019438	prpf4	99	90.476	Oryzias_latipes_hni
ENSSDUG00000022083	prpf4	94	89.648	ENSOMEG00000020941	prpf4	100	89.648	Oryzias_melastigma
ENSSDUG00000022083	prpf4	98	69.522	ENSOGAG00000007802	PRPF4	94	69.323	Otolemur_garnettii
ENSSDUG00000022083	prpf4	98	73.705	ENSOARG00000006319	PRPF4	93	73.506	Ovis_aries
ENSSDUG00000022083	prpf4	98	73.705	ENSPPAG00000041797	PRPF4	96	73.506	Pan_paniscus
ENSSDUG00000022083	prpf4	98	73.705	ENSPPRG00000014360	PRPF4	96	73.506	Panthera_pardus
ENSSDUG00000022083	prpf4	98	73.705	ENSPTIG00000009574	PRPF4	96	73.506	Panthera_tigris_altaica
ENSSDUG00000022083	prpf4	98	73.705	ENSPTRG00000021274	PRPF4	96	73.506	Pan_troglodytes
ENSSDUG00000022083	prpf4	98	73.904	ENSPANG00000025776	PRPF4	92	73.705	Papio_anubis
ENSSDUG00000022083	prpf4	99	78.150	ENSPKIG00000017259	prpf4	99	77.953	Paramormyrops_kingsleyae
ENSSDUG00000022083	prpf4	99	72.835	ENSPSIG00000010713	PRPF4	89	72.638	Pelodiscus_sinensis
ENSSDUG00000022083	prpf4	99	61.940	ENSPMGG00000000997	prpf4	96	62.873	Periophthalmus_magnuspinnatus
ENSSDUG00000022083	prpf4	98	73.506	ENSPEMG00000024115	Prpf4	96	73.307	Peromyscus_maniculatus_bairdii
ENSSDUG00000022083	prpf4	99	72.781	ENSPCIG00000003821	PRPF4	98	72.387	Phascolarctos_cinereus
ENSSDUG00000022083	prpf4	90	89.058	ENSPFOG00000013524	prpf4	99	89.058	Poecilia_formosa
ENSSDUG00000022083	prpf4	89	87.692	ENSPLAG00000011620	prpf4	97	87.616	Poecilia_latipinna
ENSSDUG00000022083	prpf4	92	89.381	ENSPMEG00000006813	prpf4	100	89.381	Poecilia_mexicana
ENSSDUG00000022083	prpf4	98	73.506	ENSPCAG00000002561	PRPF4	98	73.307	Procavia_capensis
ENSSDUG00000022083	prpf4	98	73.506	ENSPCOG00000011975	PRPF4	96	73.307	Propithecus_coquereli
ENSSDUG00000022083	prpf4	98	70.518	ENSPVAG00000004708	PRPF4	96	70.319	Pteropus_vampyrus
ENSSDUG00000022083	prpf4	94	94.824	ENSPNYG00000008013	prpf4	99	94.824	Pundamilia_nyererei
ENSSDUG00000022083	prpf4	94	80.538	ENSPNAG00000000697	prpf4	99	80.331	Pygocentrus_nattereri
ENSSDUG00000022083	prpf4	98	73.506	ENSRNOG00000014777	Prpf4	96	73.307	Rattus_norvegicus
ENSSDUG00000022083	prpf4	98	73.705	ENSRBIG00000040221	PRPF4	96	73.506	Rhinopithecus_bieti
ENSSDUG00000022083	prpf4	98	73.705	ENSRROG00000040240	PRPF4	96	73.506	Rhinopithecus_roxellana
ENSSDUG00000022083	prpf4	99	72.781	ENSSHAG00000017658	PRPF4	97	72.387	Sarcophilus_harrisii
ENSSDUG00000022083	prpf4	99	78.937	ENSSFOG00015008963	prpf4	99	78.543	Scleropages_formosus
ENSSDUG00000022083	prpf4	94	92.754	ENSSMAG00000008889	prpf4	99	92.754	Scophthalmus_maximus
ENSSDUG00000022083	prpf4	100	98.833	ENSSLDG00000008115	prpf4	100	98.833	Seriola_lalandi_dorsalis
ENSSDUG00000022083	prpf4	99	73.176	ENSSPUG00000015582	PRPF4	97	72.978	Sphenodon_punctatus
ENSSDUG00000022083	prpf4	94	88.066	ENSSPAG00000011286	prpf4	94	88.066	Stegastes_partitus
ENSSDUG00000022083	prpf4	98	73.705	ENSSSCG00000024648	PRPF4	96	73.506	Sus_scrofa
ENSSDUG00000022083	prpf4	96	74.645	ENSTGUG00000002623	PRPF4	100	77.586	Taeniopygia_guttata
ENSSDUG00000022083	prpf4	94	89.234	ENSTRUG00000008853	prpf4	99	89.027	Takifugu_rubripes
ENSSDUG00000022083	prpf4	94	88.820	ENSTNIG00000013250	prpf4	99	88.613	Tetraodon_nigroviridis
ENSSDUG00000022083	prpf4	98	66.534	ENSTBEG00000000821	PRPF4	96	66.335	Tupaia_belangeri
ENSSDUG00000022083	prpf4	83	78.188	ENSTTRG00000003246	PRPF4	79	78.188	Tursiops_truncatus
ENSSDUG00000022083	prpf4	69	66.667	ENSUAMG00000018288	PRPF4	95	66.384	Ursus_americanus
ENSSDUG00000022083	prpf4	98	73.108	ENSUMAG00000019375	PRPF4	96	72.908	Ursus_maritimus
ENSSDUG00000022083	prpf4	97	73.747	ENSVPAG00000005281	PRPF4	96	73.547	Vicugna_pacos
ENSSDUG00000022083	prpf4	98	72.925	ENSVVUG00000002476	PRPF4	99	73.016	Vulpes_vulpes
ENSSDUG00000022083	prpf4	70	64.560	ENSXCOG00000006101	prpf4	86	65.183	Xiphophorus_couchianus
ENSSDUG00000022083	prpf4	90	77.204	ENSXMAG00000002750	prpf4	94	77.226	Xiphophorus_maculatus