EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000022142 (Gene tree)
Gene ID: 111217531
Gene Symbol: setd1a
Alias: -
Full Name: SET domain containing 1A
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 21002 bases
Position: chrBDQW01000044.1:3617062-3638063
Accession: 111217531
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000030738	RRM_1	PF00076.22	9.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000031273	-	8754	XM_022739444	ENSSDUP00000030738	2212 (aa)	XP_022595165	UPI000BBE46B1

Gene Model

Click here to download ENSSDUG00000022142's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000022142's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000022142	setd1a	62	61.351	ENSSDUG00000018313	setd1ba	56	68.525

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000022142	setd1a	82	99.005	ENSAPOG00000018002	setd1a	78	99.005	Acanthochromis_polyacanthus
ENSSDUG00000022142	setd1a	77	90.909	ENSACIG00000007144	setd1a	94	100.000	Amphilophus_citrinellus
ENSSDUG00000022142	setd1a	100	92.360	ENSAOCG00000003663	setd1a	100	92.000	Amphiprion_ocellaris
ENSSDUG00000022142	setd1a	100	90.099	ENSATEG00000022798	setd1a	100	89.829	Anabas_testudineus
ENSSDUG00000022142	setd1a	100	88.463	ENSACLG00000024747	setd1a	100	88.869	Astatotilapia_calliptera
ENSSDUG00000022142	setd1a	100	84.348	ENSCSEG00000021605	setd1a	100	82.950	Cynoglossus_semilaevis
ENSSDUG00000022142	setd1a	100	80.728	ENSCVAG00000011672	setd1a	100	79.279	Cyprinodon_variegatus
ENSSDUG00000022142	setd1a	90	78.117	ENSFHEG00000023258	setd1a	99	76.815	Fundulus_heteroclitus
ENSSDUG00000022142	setd1a	57	92.971	ENSGAFG00000011698	setd1a	78	92.675	Gambusia_affinis
ENSSDUG00000022142	setd1a	100	88.779	ENSHBUG00000008893	setd1a	100	89.094	Haplochromis_burtoni
ENSSDUG00000022142	setd1a	76	86.080	ENSHCOG00000003119	setd1a	95	86.494	Hippocampus_comes
ENSSDUG00000022142	setd1a	100	84.872	ENSKMAG00000009484	setd1a	100	83.926	Kryptolebias_marmoratus
ENSSDUG00000022142	setd1a	100	84.674	ENSLBEG00000004399	setd1a	69	83.713	Labrus_bergylta
ENSSDUG00000022142	setd1a	71	93.902	ENSMAMG00000021851	setd1a	96	93.902	Mastacembelus_armatus
ENSSDUG00000022142	setd1a	100	88.283	ENSMZEG00005023141	setd1a	100	88.013	Maylandia_zebra
ENSSDUG00000022142	setd1a	70	93.696	ENSMMOG00000016992	setd1a	99	94.493	Mola_mola
ENSSDUG00000022142	setd1a	99	79.721	ENSMALG00000007401	setd1a	98	79.694	Monopterus_albus
ENSSDUG00000022142	setd1a	74	84.419	ENSNBRG00000004760	setd1a	75	83.849	Neolamprologus_brichardi
ENSSDUG00000022142	setd1a	85	85.714	ENSONIG00000009854	setd1a	88	85.714	Oreochromis_niloticus
ENSSDUG00000022142	setd1a	100	80.974	ENSORLG00000002213	setd1a	100	80.343	Oryzias_latipes
ENSSDUG00000022142	setd1a	100	81.118	ENSORLG00020011897	setd1a	100	80.298	Oryzias_latipes_hni
ENSSDUG00000022142	setd1a	100	81.388	ENSORLG00015004826	setd1a	100	80.343	Oryzias_latipes_hsok
ENSSDUG00000022142	setd1a	100	80.487	ENSOMEG00000019732	setd1a	75	80.827	Oryzias_melastigma
ENSSDUG00000022142	setd1a	100	76.975	ENSPFOG00000013669	setd1a	100	77.907	Poecilia_formosa
ENSSDUG00000022142	setd1a	100	79.290	ENSPLAG00000009294	setd1a	100	79.416	Poecilia_latipinna
ENSSDUG00000022142	setd1a	100	78.751	ENSPMEG00000005864	setd1a	100	79.200	Poecilia_mexicana
ENSSDUG00000022142	setd1a	100	77.927	ENSPREG00000010201	setd1a	100	77.882	Poecilia_reticulata
ENSSDUG00000022142	setd1a	100	87.877	ENSPNYG00000014139	setd1a	100	88.553	Pundamilia_nyererei
ENSSDUG00000022142	setd1a	100	87.854	ENSSMAG00000008846	setd1a	100	88.169	Scophthalmus_maximus
ENSSDUG00000022142	setd1a	100	99.367	ENSSLDG00000018250	setd1a	100	99.367	Seriola_lalandi_dorsalis
ENSSDUG00000022142	setd1a	100	92.799	ENSSPAG00000007822	setd1a	100	92.934	Stegastes_partitus
ENSSDUG00000022142	setd1a	83	83.775	ENSTRUG00000008953	setd1a	99	85.572	Takifugu_rubripes
ENSSDUG00000022142	setd1a	82	90.591	ENSTNIG00000014930	setd1a	77	94.737	Tetraodon_nigroviridis
ENSSDUG00000022142	setd1a	95	79.225	ENSXCOG00000017585	setd1a	59	79.070	Xiphophorus_couchianus
ENSSDUG00000022142	setd1a	100	78.806	ENSXMAG00000008021	setd1a	100	79.165	Xiphophorus_maculatus