EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000022219 (Gene tree)
Gene ID: 111230257
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5327 bases
Position: chrBDQW01000017.1:6082832-6088158
Accession: 111230257
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000030853	PRP21_like_P	PF12230.8	2.7e-51	1	1
ENSSDUP00000030863	PRP21_like_P	PF12230.8	4.3e-41	1	1
ENSSDUP00000030863	Surp	PF01805.20	6e-46	1	2
ENSSDUP00000030863	Surp	PF01805.20	6e-46	2	2
ENSSDUP00000030853	Surp	PF01805.20	6.1e-46	1	2
ENSSDUP00000030853	Surp	PF01805.20	6.1e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000031389	-	2768	XM_022756927	ENSSDUP00000030853	785 (aa)	XP_022612648	UPI000BBEE240
ENSSDUT00000031399	-	2295	-	ENSSDUP00000030863	764 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000022219's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000022219's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000022219	sf3a1	99	85.419	ENSG00000099995	SF3A1	100	83.625	Homo_sapiens
ENSSDUG00000022219	sf3a1	100	96.692	ENSAPOG00000020465	sf3a1	100	96.692	Acanthochromis_polyacanthus
ENSSDUG00000022219	sf3a1	99	85.161	ENSAMEG00000007737	SF3A1	100	83.689	Ailuropoda_melanoleuca
ENSSDUG00000022219	sf3a1	100	96.183	ENSACIG00000020672	sf3a1	100	96.183	Amphilophus_citrinellus
ENSSDUG00000022219	sf3a1	100	96.692	ENSAOCG00000003060	sf3a1	100	96.692	Amphiprion_ocellaris
ENSSDUG00000022219	sf3a1	100	96.819	ENSAPEG00000010735	sf3a1	100	96.819	Amphiprion_percula
ENSSDUG00000022219	sf3a1	97	96.471	ENSATEG00000021201	sf3a1	96	96.471	Anabas_testudineus
ENSSDUG00000022219	sf3a1	96	84.565	ENSAPLG00000009057	SF3A1	100	84.655	Anas_platyrhynchos
ENSSDUG00000022219	sf3a1	100	80.964	ENSACAG00000009415	SF3A1	100	81.706	Anolis_carolinensis
ENSSDUG00000022219	sf3a1	99	84.527	ENSANAG00000032045	SF3A1	100	83.875	Aotus_nancymaae
ENSSDUG00000022219	sf3a1	100	94.650	ENSACLG00000012622	sf3a1	100	95.924	Astatotilapia_calliptera
ENSSDUG00000022219	sf3a1	99	89.172	ENSAMXG00000005382	sf3a1	99	89.809	Astyanax_mexicanus
ENSSDUG00000022219	sf3a1	99	84.655	ENSBTAG00000003390	SF3A1	100	83.899	Bos_taurus
ENSSDUG00000022219	sf3a1	80	46.214	WBGene00004188	prp-21	59	50.000	Caenorhabditis_elegans
ENSSDUG00000022219	sf3a1	99	84.399	ENSCJAG00000010370	SF3A1	100	83.750	Callithrix_jacchus
ENSSDUG00000022219	sf3a1	99	84.655	ENSCAFG00000012559	SF3A1	100	83.899	Canis_familiaris
ENSSDUG00000022219	sf3a1	99	84.655	ENSCAFG00020000838	SF3A1	100	83.899	Canis_lupus_dingo
ENSSDUG00000022219	sf3a1	99	84.783	ENSCHIG00000018642	SF3A1	100	84.025	Capra_hircus
ENSSDUG00000022219	sf3a1	99	85.161	ENSTSYG00000004739	SF3A1	100	83.899	Carlito_syrichta
ENSSDUG00000022219	sf3a1	95	68.667	ENSCAPG00000015414	SF3A1	98	69.067	Cavia_aperea
ENSSDUG00000022219	sf3a1	99	84.744	ENSCPOG00000014589	SF3A1	100	83.899	Cavia_porcellus
ENSSDUG00000022219	sf3a1	99	84.527	ENSCCAG00000032006	SF3A1	100	83.875	Cebus_capucinus
ENSSDUG00000022219	sf3a1	99	84.655	ENSCATG00000029241	SF3A1	100	83.648	Cercocebus_atys
ENSSDUG00000022219	sf3a1	97	85.621	ENSCLAG00000006508	SF3A1	100	83.774	Chinchilla_lanigera
ENSSDUG00000022219	sf3a1	99	84.527	ENSCSAG00000009470	SF3A1	100	83.625	Chlorocebus_sabaeus
ENSSDUG00000022219	sf3a1	59	89.286	ENSCHOG00000005201	SF3A1	61	89.338	Choloepus_hoffmanni
ENSSDUG00000022219	sf3a1	100	81.818	ENSCPBG00000007595	SF3A1	100	83.081	Chrysemys_picta_bellii
ENSSDUG00000022219	sf3a1	97	51.819	ENSCING00000008526	-	97	50.941	Ciona_intestinalis
ENSSDUG00000022219	sf3a1	92	63.158	ENSCSAVG00000005608	-	92	65.854	Ciona_savignyi
ENSSDUG00000022219	sf3a1	99	84.527	ENSCANG00000033564	SF3A1	100	83.625	Colobus_angolensis_palliatus
ENSSDUG00000022219	sf3a1	97	85.658	ENSCGRG00001008933	Sf3a1	100	83.648	Cricetulus_griseus_chok1gshd
ENSSDUG00000022219	sf3a1	97	85.658	ENSCGRG00000006127	Sf3a1	100	83.648	Cricetulus_griseus_crigri
ENSSDUG00000022219	sf3a1	100	91.741	ENSCSEG00000010792	sf3a1	100	91.995	Cynoglossus_semilaevis
ENSSDUG00000022219	sf3a1	100	92.503	ENSCVAG00000004560	sf3a1	100	92.757	Cyprinodon_variegatus
ENSSDUG00000022219	sf3a1	100	87.421	ENSDARG00000041887	sf3a1	100	90.857	Danio_rerio
ENSSDUG00000022219	sf3a1	99	85.438	ENSDNOG00000010629	SF3A1	98	84.791	Dasypus_novemcinctus
ENSSDUG00000022219	sf3a1	99	84.910	ENSDORG00000005613	Sf3a1	100	83.774	Dipodomys_ordii
ENSSDUG00000022219	sf3a1	83	61.509	FBgn0266917	Sf3a1	87	67.905	Drosophila_melanogaster
ENSSDUG00000022219	sf3a1	85	84.132	ENSETEG00000017194	SF3A1	95	85.180	Echinops_telfairi
ENSSDUG00000022219	sf3a1	98	67.244	ENSEBUG00000001285	sf3a1	96	68.974	Eptatretus_burgeri
ENSSDUG00000022219	sf3a1	97	85.621	ENSEASG00005010254	SF3A1	100	83.899	Equus_asinus_asinus
ENSSDUG00000022219	sf3a1	97	85.621	ENSECAG00000023962	SF3A1	100	83.899	Equus_caballus
ENSSDUG00000022219	sf3a1	74	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSSDUG00000022219	sf3a1	100	86.819	ENSELUG00000022578	sf3a1	100	88.340	Esox_lucius
ENSSDUG00000022219	sf3a1	99	84.399	ENSFCAG00000011932	SF3A1	100	83.648	Felis_catus
ENSSDUG00000022219	sf3a1	96	83.884	ENSFALG00000006944	SF3A1	100	83.480	Ficedula_albicollis
ENSSDUG00000022219	sf3a1	99	85.032	ENSFDAG00000009560	SF3A1	100	83.774	Fukomys_damarensis
ENSSDUG00000022219	sf3a1	100	92.249	ENSFHEG00000010866	sf3a1	100	92.884	Fundulus_heteroclitus
ENSSDUG00000022219	sf3a1	100	88.153	ENSGMOG00000016024	sf3a1	100	88.295	Gadus_morhua
ENSSDUG00000022219	sf3a1	96	84.676	ENSGALG00000007937	SF3A1	100	83.859	Gallus_gallus
ENSSDUG00000022219	sf3a1	100	92.757	ENSGAFG00000009111	sf3a1	100	93.011	Gambusia_affinis
ENSSDUG00000022219	sf3a1	100	91.150	ENSGACG00000011893	sf3a1	100	91.150	Gasterosteus_aculeatus
ENSSDUG00000022219	sf3a1	96	81.555	ENSGAGG00000000762	SF3A1	99	82.609	Gopherus_agassizii
ENSSDUG00000022219	sf3a1	99	85.419	ENSGGOG00000012631	SF3A1	100	83.625	Gorilla_gorilla
ENSSDUG00000022219	sf3a1	100	96.051	ENSHBUG00000015795	sf3a1	100	96.051	Haplochromis_burtoni
ENSSDUG00000022219	sf3a1	99	84.527	ENSHGLG00000007907	SF3A1	100	83.774	Heterocephalus_glaber_female
ENSSDUG00000022219	sf3a1	99	84.527	ENSHGLG00100013799	SF3A1	100	83.774	Heterocephalus_glaber_male
ENSSDUG00000022219	sf3a1	100	89.809	ENSHCOG00000015423	sf3a1	100	89.809	Hippocampus_comes
ENSSDUG00000022219	sf3a1	97	86.849	ENSIPUG00000002470	sf3a1	99	87.306	Ictalurus_punctatus
ENSSDUG00000022219	sf3a1	97	85.359	ENSSTOG00000013892	SF3A1	100	84.025	Ictidomys_tridecemlineatus
ENSSDUG00000022219	sf3a1	99	84.903	ENSJJAG00000022566	Sf3a1	100	83.645	Jaculus_jaculus
ENSSDUG00000022219	sf3a1	100	92.494	ENSKMAG00000002400	sf3a1	100	93.130	Kryptolebias_marmoratus
ENSSDUG00000022219	sf3a1	100	93.885	ENSLBEG00000022974	sf3a1	100	93.885	Labrus_bergylta
ENSSDUG00000022219	sf3a1	100	83.418	ENSLACG00000003565	SF3A1	100	84.177	Latimeria_chalumnae
ENSSDUG00000022219	sf3a1	100	87.848	ENSLOCG00000008251	sf3a1	99	88.354	Lepisosteus_oculatus
ENSSDUG00000022219	sf3a1	98	55.939	ENSLAFG00000026032	-	98	55.654	Loxodonta_africana
ENSSDUG00000022219	sf3a1	99	84.655	ENSLAFG00000000448	SF3A1	100	83.899	Loxodonta_africana
ENSSDUG00000022219	sf3a1	99	84.399	ENSMFAG00000031979	SF3A1	100	83.500	Macaca_fascicularis
ENSSDUG00000022219	sf3a1	99	84.399	ENSMMUG00000005547	SF3A1	100	83.500	Macaca_mulatta
ENSSDUG00000022219	sf3a1	99	84.527	ENSMNEG00000037229	SF3A1	100	83.625	Macaca_nemestrina
ENSSDUG00000022219	sf3a1	99	84.527	ENSMLEG00000041908	SF3A1	100	83.625	Mandrillus_leucophaeus
ENSSDUG00000022219	sf3a1	99	95.391	ENSMAMG00000006460	sf3a1	98	95.391	Mastacembelus_armatus
ENSSDUG00000022219	sf3a1	100	94.650	ENSMZEG00005009633	sf3a1	100	95.924	Maylandia_zebra
ENSSDUG00000022219	sf3a1	96	84.676	ENSMGAG00000001330	SF3A1	100	84.833	Meleagris_gallopavo
ENSSDUG00000022219	sf3a1	93	81.335	ENSMAUG00000020317	Sf3a1	100	77.975	Mesocricetus_auratus
ENSSDUG00000022219	sf3a1	99	84.783	ENSMICG00000010038	SF3A1	100	84.025	Microcebus_murinus
ENSSDUG00000022219	sf3a1	99	84.143	ENSMOCG00000008438	Sf3a1	100	83.375	Microtus_ochrogaster
ENSSDUG00000022219	sf3a1	100	92.739	ENSMMOG00000015588	sf3a1	99	92.994	Mola_mola
ENSSDUG00000022219	sf3a1	99	82.519	ENSMODG00000009270	SF3A1	100	83.753	Monodelphis_domestica
ENSSDUG00000022219	sf3a1	100	93.782	ENSMALG00000000148	sf3a1	100	94.797	Monopterus_albus
ENSSDUG00000022219	sf3a1	99	84.190	MGP_CAROLIEiJ_G0016029	Sf3a1	99	84.051	Mus_caroli
ENSSDUG00000022219	sf3a1	99	84.190	ENSMUSG00000002129	Sf3a1	99	84.051	Mus_musculus
ENSSDUG00000022219	sf3a1	99	84.319	MGP_PahariEiJ_G0016862	Sf3a1	99	84.177	Mus_pahari
ENSSDUG00000022219	sf3a1	99	84.190	MGP_SPRETEiJ_G0016870	Sf3a1	99	84.051	Mus_spretus
ENSSDUG00000022219	sf3a1	99	84.399	ENSMPUG00000013144	SF3A1	100	84.025	Mustela_putorius_furo
ENSSDUG00000022219	sf3a1	97	85.490	ENSMLUG00000002139	SF3A1	100	83.774	Myotis_lucifugus
ENSSDUG00000022219	sf3a1	97	85.752	ENSNGAG00000016977	Sf3a1	100	84.025	Nannospalax_galili
ENSSDUG00000022219	sf3a1	100	95.553	ENSNBRG00000016642	sf3a1	100	95.553	Neolamprologus_brichardi
ENSSDUG00000022219	sf3a1	99	84.527	ENSNLEG00000003686	SF3A1	100	83.625	Nomascus_leucogenys
ENSSDUG00000022219	sf3a1	94	76.087	ENSMEUG00000008741	SF3A1	100	75.296	Notamacropus_eugenii
ENSSDUG00000022219	sf3a1	99	85.419	ENSOPRG00000016636	SF3A1	100	84.250	Ochotona_princeps
ENSSDUG00000022219	sf3a1	98	85.176	ENSODEG00000002571	SF3A1	100	83.879	Octodon_degus
ENSSDUG00000022219	sf3a1	100	96.433	ENSONIG00000010848	sf3a1	100	96.433	Oreochromis_niloticus
ENSSDUG00000022219	sf3a1	97	85.621	ENSOCUG00000007633	SF3A1	100	83.899	Oryctolagus_cuniculus
ENSSDUG00000022219	sf3a1	96	93.085	ENSORLG00000013050	sf3a1	99	93.218	Oryzias_latipes
ENSSDUG00000022219	sf3a1	99	90.641	ENSORLG00020003236	sf3a1	97	91.344	Oryzias_latipes_hni
ENSSDUG00000022219	sf3a1	100	92.739	ENSORLG00015017411	sf3a1	100	92.866	Oryzias_latipes_hsok
ENSSDUG00000022219	sf3a1	100	93.885	ENSOMEG00000013362	sf3a1	100	93.885	Oryzias_melastigma
ENSSDUG00000022219	sf3a1	99	85.419	ENSOGAG00000012931	SF3A1	100	83.899	Otolemur_garnettii
ENSSDUG00000022219	sf3a1	99	83.376	ENSOARG00000006849	SF3A1	100	82.516	Ovis_aries
ENSSDUG00000022219	sf3a1	99	84.645	ENSPPAG00000041790	SF3A1	100	82.875	Pan_paniscus
ENSSDUG00000022219	sf3a1	99	84.399	ENSPPRG00000004391	SF3A1	100	83.648	Panthera_pardus
ENSSDUG00000022219	sf3a1	99	84.774	ENSPTIG00000000844	SF3A1	99	85.290	Panthera_tigris_altaica
ENSSDUG00000022219	sf3a1	99	85.419	ENSPTRG00000014240	SF3A1	100	83.625	Pan_troglodytes
ENSSDUG00000022219	sf3a1	99	84.527	ENSPANG00000020772	SF3A1	100	83.625	Papio_anubis
ENSSDUG00000022219	sf3a1	82	91.209	ENSPSIG00000012803	SF3A1	99	91.209	Pelodiscus_sinensis
ENSSDUG00000022219	sf3a1	97	89.398	ENSPMGG00000023096	sf3a1	100	90.969	Periophthalmus_magnuspinnatus
ENSSDUG00000022219	sf3a1	97	85.395	ENSPEMG00000009494	Sf3a1	100	83.522	Peromyscus_maniculatus_bairdii
ENSSDUG00000022219	sf3a1	69	77.148	ENSPMAG00000007139	-	100	72.020	Petromyzon_marinus
ENSSDUG00000022219	sf3a1	97	84.183	ENSPCIG00000022692	SF3A1	100	83.501	Phascolarctos_cinereus
ENSSDUG00000022219	sf3a1	100	83.629	ENSPFOG00000016768	sf3a1	100	83.629	Poecilia_formosa
ENSSDUG00000022219	sf3a1	100	93.520	ENSPLAG00000017268	sf3a1	100	93.774	Poecilia_latipinna
ENSSDUG00000022219	sf3a1	96	93.684	ENSPMEG00000019811	sf3a1	100	93.684	Poecilia_mexicana
ENSSDUG00000022219	sf3a1	100	93.266	ENSPREG00000010347	sf3a1	100	93.520	Poecilia_reticulata
ENSSDUG00000022219	sf3a1	99	84.527	ENSPPYG00000011707	SF3A1	100	83.625	Pongo_abelii
ENSSDUG00000022219	sf3a1	58	84.762	ENSPCAG00000003266	SF3A1	57	84.762	Procavia_capensis
ENSSDUG00000022219	sf3a1	99	84.527	ENSPCOG00000026630	SF3A1	100	83.774	Propithecus_coquereli
ENSSDUG00000022219	sf3a1	95	85.007	ENSPVAG00000017719	SF3A1	94	85.542	Pteropus_vampyrus
ENSSDUG00000022219	sf3a1	100	95.796	ENSPNYG00000018706	sf3a1	100	95.796	Pundamilia_nyererei
ENSSDUG00000022219	sf3a1	99	88.917	ENSPNAG00000003721	sf3a1	99	89.172	Pygocentrus_nattereri
ENSSDUG00000022219	sf3a1	98	84.217	ENSRNOG00000005218	Sf3a1	99	83.736	Rattus_norvegicus
ENSSDUG00000022219	sf3a1	99	84.399	ENSRBIG00000032167	SF3A1	100	83.625	Rhinopithecus_bieti
ENSSDUG00000022219	sf3a1	99	84.399	ENSRROG00000044908	SF3A1	100	83.625	Rhinopithecus_roxellana
ENSSDUG00000022219	sf3a1	94	85.578	ENSSBOG00000021960	SF3A1	98	86.377	Saimiri_boliviensis_boliviensis
ENSSDUG00000022219	sf3a1	100	79.517	ENSSHAG00000003666	SF3A1	97	82.620	Sarcophilus_harrisii
ENSSDUG00000022219	sf3a1	100	89.001	ENSSFOG00015004579	sf3a1	100	89.760	Scleropages_formosus
ENSSDUG00000022219	sf3a1	100	91.847	ENSSMAG00000004275	sf3a1	100	91.975	Scophthalmus_maximus
ENSSDUG00000022219	sf3a1	100	100.000	ENSSLDG00000012642	sf3a1	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000022219	sf3a1	97	83.007	ENSSARG00000005960	SF3A1	99	83.007	Sorex_araneus
ENSSDUG00000022219	sf3a1	97	83.615	ENSSPUG00000018863	SF3A1	100	82.544	Sphenodon_punctatus
ENSSDUG00000022219	sf3a1	100	97.452	ENSSPAG00000011856	sf3a1	100	97.452	Stegastes_partitus
ENSSDUG00000022219	sf3a1	99	84.527	ENSSSCG00000010002	SF3A1	100	84.025	Sus_scrofa
ENSSDUG00000022219	sf3a1	96	84.453	ENSTGUG00000010547	SF3A1	99	85.789	Taeniopygia_guttata
ENSSDUG00000022219	sf3a1	100	90.191	ENSTRUG00000006118	sf3a1	100	90.064	Takifugu_rubripes
ENSSDUG00000022219	sf3a1	62	88.806	ENSTNIG00000005713	sf3a1	88	90.826	Tetraodon_nigroviridis
ENSSDUG00000022219	sf3a1	99	77.920	ENSTBEG00000012771	SF3A1	100	77.736	Tupaia_belangeri
ENSSDUG00000022219	sf3a1	99	84.547	ENSTTRG00000001535	SF3A1	100	83.668	Tursiops_truncatus
ENSSDUG00000022219	sf3a1	99	82.494	ENSUAMG00000006750	SF3A1	99	82.890	Ursus_americanus
ENSSDUG00000022219	sf3a1	99	85.161	ENSUMAG00000016665	SF3A1	99	84.949	Ursus_maritimus
ENSSDUG00000022219	sf3a1	99	84.655	ENSVVUG00000003075	SF3A1	100	83.899	Vulpes_vulpes
ENSSDUG00000022219	sf3a1	100	79.125	ENSXETG00000016144	sf3a1	96	84.615	Xenopus_tropicalis
ENSSDUG00000022219	sf3a1	100	92.757	ENSXCOG00000015653	sf3a1	100	93.011	Xiphophorus_couchianus
ENSSDUG00000022219	sf3a1	100	93.011	ENSXMAG00000002753	sf3a1	100	93.266	Xiphophorus_maculatus