EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000022323 (Gene tree)
Gene ID: 111236528
Gene Symbol: -
Alias: -
Full Name: RNA exonuclease 1 homolog
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 25275 bases
Position: chrBDQW01000668.1:514573-539847
Accession: 111236528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000031023	RNase_T	PF00929.24	1.7e-06	1	1
ENSSDUP00000031033	RNase_T	PF00929.24	3.8e-06	1	1
ENSSDUP00000031036	RNase_T	PF00929.24	4.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000031569	-	3114	-	ENSSDUP00000031033	1037 (aa)	-	-
ENSSDUT00000031559	-	4312	-	ENSSDUP00000031023	1119 (aa)	-	-
ENSSDUT00000031572	-	4327	XM_022765288	ENSSDUP00000031036	1159 (aa)	XP_022621009	-

Gene Model

Click here to download ENSSDUG00000022323's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000022323's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000022323	-	77	79.319	ENSAPOG00000005095	zgc:152968	99	78.692	Acanthochromis_polyacanthus
ENSSDUG00000022323	-	89	84.029	ENSACIG00000002527	zgc:152968	99	82.725	Amphilophus_citrinellus
ENSSDUG00000022323	-	96	76.214	ENSAOCG00000018049	-	99	76.214	Amphiprion_ocellaris
ENSSDUG00000022323	-	99	57.491	ENSAPEG00000012559	zgc:152968	99	57.570	Amphiprion_percula
ENSSDUG00000022323	-	98	82.439	ENSACLG00000020524	-	98	82.968	Astatotilapia_calliptera
ENSSDUG00000022323	-	87	80.402	ENSCVAG00000015400	zgc:152968	100	78.960	Cyprinodon_variegatus
ENSSDUG00000022323	-	76	54.755	ENSDARG00000037002	zgc:152968	68	55.189	Danio_rerio
ENSSDUG00000022323	-	98	64.579	ENSELUG00000014272	zgc:152968	92	64.579	Esox_lucius
ENSSDUG00000022323	-	97	79.075	ENSFHEG00000003641	-	88	68.991	Fundulus_heteroclitus
ENSSDUG00000022323	-	96	79.756	ENSGAFG00000016810	-	80	88.073	Gambusia_affinis
ENSSDUG00000022323	-	95	81.937	ENSHBUG00000007524	-	85	81.937	Haplochromis_burtoni
ENSSDUG00000022323	-	74	65.517	ENSIPUG00000004633	zgc:152968	72	88.000	Ictalurus_punctatus
ENSSDUG00000022323	-	85	74.556	ENSLBEG00000026485	zgc:152968	99	74.556	Labrus_bergylta
ENSSDUG00000022323	-	98	75.057	ENSMAMG00000005920	-	88	75.057	Mastacembelus_armatus
ENSSDUG00000022323	-	98	82.195	ENSMZEG00005013783	-	98	80.976	Maylandia_zebra
ENSSDUG00000022323	-	97	62.133	ENSMMOG00000018072	zgc:152968	94	82.238	Mola_mola
ENSSDUG00000022323	-	86	77.576	ENSMALG00000003536	-	99	77.576	Monopterus_albus
ENSSDUG00000022323	-	98	82.683	ENSONIG00000016897	-	87	82.683	Oreochromis_niloticus
ENSSDUG00000022323	-	77	75.300	ENSORLG00020012504	-	88	67.414	Oryzias_latipes_hni
ENSSDUG00000022323	-	75	68.717	ENSOMEG00000008840	-	82	69.369	Oryzias_melastigma
ENSSDUG00000022323	-	96	79.756	ENSPFOG00000006104	-	84	79.756	Poecilia_formosa
ENSSDUG00000022323	-	96	79.756	ENSPLAG00000005034	-	99	78.177	Poecilia_latipinna
ENSSDUG00000022323	-	96	80.000	ENSPMEG00000018012	-	84	80.000	Poecilia_mexicana
ENSSDUG00000022323	-	84	76.023	ENSPREG00000007481	-	98	72.127	Poecilia_reticulata
ENSSDUG00000022323	-	55	53.251	ENSSFOG00015023869	zgc:152968	62	63.158	Scleropages_formosus
ENSSDUG00000022323	-	98	85.610	ENSSMAG00000008149	-	89	85.401	Scophthalmus_maximus
ENSSDUG00000022323	-	99	95.914	ENSSLDG00000018799	zgc:152968	98	95.914	Seriola_lalandi_dorsalis
ENSSDUG00000022323	-	86	73.783	ENSSPAG00000007632	-	96	73.783	Stegastes_partitus
ENSSDUG00000022323	-	98	78.049	ENSTRUG00000025441	zgc:152968	88	78.049	Takifugu_rubripes
ENSSDUG00000022323	-	95	80.292	ENSXMAG00000026483	-	84	80.292	Xiphophorus_maculatus