EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000022435 (Gene tree)
Gene ID: 111237577
Gene Symbol: polr3f
Alias: zgc:56299|zgc:76983
Full Name: RNA polymerase III subunit F
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 2876 bases
Position: chrBDQW01001001.1:383558-386433
Accession: 111237577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000031203	RNA_pol_Rpc34	PF05158.12	5.6e-89	1	2
ENSSDUP00000031203	RNA_pol_Rpc34	PF05158.12	5.6e-89	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000031739	-	879	XM_022766724	ENSSDUP00000031203	292 (aa)	XP_022622445	-

Gene Model

Click here to download ENSSDUG00000022435's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03020	RNA polymerase	KEGG
sdu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000022435's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000022435	polr3f	100	77.215	ENSG00000132664	POLR3F	100	77.215	Homo_sapiens
ENSSDUG00000022435	polr3f	100	84.494	ENSAPOG00000008271	polr3f	100	84.494	Acanthochromis_polyacanthus
ENSSDUG00000022435	polr3f	100	77.532	ENSAMEG00000005222	POLR3F	100	77.532	Ailuropoda_melanoleuca
ENSSDUG00000022435	polr3f	100	77.215	ENSACIG00000006705	polr3f	100	77.532	Amphilophus_citrinellus
ENSSDUG00000022435	polr3f	100	84.177	ENSAOCG00000000687	polr3f	100	84.177	Amphiprion_ocellaris
ENSSDUG00000022435	polr3f	100	83.861	ENSAPEG00000015263	polr3f	100	83.861	Amphiprion_percula
ENSSDUG00000022435	polr3f	86	83.636	ENSATEG00000015539	polr3f	100	83.636	Anabas_testudineus
ENSSDUG00000022435	polr3f	86	78.182	ENSAPLG00000005533	POLR3F	100	78.182	Anas_platyrhynchos
ENSSDUG00000022435	polr3f	97	77.597	ENSACAG00000014293	POLR3F	99	77.597	Anolis_carolinensis
ENSSDUG00000022435	polr3f	100	77.532	ENSANAG00000026726	POLR3F	100	77.532	Aotus_nancymaae
ENSSDUG00000022435	polr3f	100	84.810	ENSACLG00000003615	polr3f	100	84.810	Astatotilapia_calliptera
ENSSDUG00000022435	polr3f	100	80.380	ENSAMXG00000036020	polr3f	100	80.380	Astyanax_mexicanus
ENSSDUG00000022435	polr3f	100	77.215	ENSBTAG00000008825	POLR3F	100	77.215	Bos_taurus
ENSSDUG00000022435	polr3f	96	32.237	WBGene00021112	W09C3.4	97	32.237	Caenorhabditis_elegans
ENSSDUG00000022435	polr3f	100	77.532	ENSCJAG00000005159	POLR3F	100	77.532	Callithrix_jacchus
ENSSDUG00000022435	polr3f	100	77.215	ENSCAFG00000005420	POLR3F	100	77.215	Canis_familiaris
ENSSDUG00000022435	polr3f	100	77.215	ENSCAFG00020027500	POLR3F	100	77.215	Canis_lupus_dingo
ENSSDUG00000022435	polr3f	100	77.215	ENSCHIG00000014743	POLR3F	100	77.215	Capra_hircus
ENSSDUG00000022435	polr3f	100	77.215	ENSTSYG00000004207	POLR3F	100	77.215	Carlito_syrichta
ENSSDUG00000022435	polr3f	93	47.232	ENSCAPG00000008423	POLR3F	100	46.494	Cavia_aperea
ENSSDUG00000022435	polr3f	100	76.266	ENSCPOG00000002400	POLR3F	100	76.266	Cavia_porcellus
ENSSDUG00000022435	polr3f	100	83.219	ENSCCAG00000021800	POLR3F	100	83.219	Cebus_capucinus
ENSSDUG00000022435	polr3f	100	76.899	ENSCATG00000019507	POLR3F	100	76.899	Cercocebus_atys
ENSSDUG00000022435	polr3f	100	76.899	ENSCLAG00000016296	POLR3F	100	76.899	Chinchilla_lanigera
ENSSDUG00000022435	polr3f	100	76.899	ENSCSAG00000011513	POLR3F	100	76.899	Chlorocebus_sabaeus
ENSSDUG00000022435	polr3f	79	88.764	ENSCHOG00000013268	POLR3F	73	88.764	Choloepus_hoffmanni
ENSSDUG00000022435	polr3f	86	84.064	ENSCPBG00000023473	POLR3F	100	84.064	Chrysemys_picta_bellii
ENSSDUG00000022435	polr3f	99	54.747	ENSCING00000001212	-	99	54.747	Ciona_intestinalis
ENSSDUG00000022435	polr3f	64	63.441	ENSCSAVG00000003340	-	96	57.988	Ciona_savignyi
ENSSDUG00000022435	polr3f	91	75.258	ENSCANG00000037390	POLR3F	100	75.258	Colobus_angolensis_palliatus
ENSSDUG00000022435	polr3f	100	76.899	ENSCGRG00001002032	Polr3f	100	76.899	Cricetulus_griseus_chok1gshd
ENSSDUG00000022435	polr3f	100	76.899	ENSCGRG00000010852	Polr3f	100	76.899	Cricetulus_griseus_crigri
ENSSDUG00000022435	polr3f	100	81.013	ENSCSEG00000001247	polr3f	100	81.013	Cynoglossus_semilaevis
ENSSDUG00000022435	polr3f	100	83.544	ENSCVAG00000007611	polr3f	100	83.544	Cyprinodon_variegatus
ENSSDUG00000022435	polr3f	100	80.380	ENSDARG00000012572	polr3f	100	80.380	Danio_rerio
ENSSDUG00000022435	polr3f	100	74.684	ENSDNOG00000010719	POLR3F	100	74.684	Dasypus_novemcinctus
ENSSDUG00000022435	polr3f	100	76.899	ENSDORG00000016352	Polr3f	100	76.899	Dipodomys_ordii
ENSSDUG00000022435	polr3f	94	46.333	FBgn0038951	CG5380	99	46.333	Drosophila_melanogaster
ENSSDUG00000022435	polr3f	87	51.254	ENSETEG00000015485	-	99	51.254	Echinops_telfairi
ENSSDUG00000022435	polr3f	100	68.671	ENSEBUG00000006783	polr3f	100	68.671	Eptatretus_burgeri
ENSSDUG00000022435	polr3f	100	77.215	ENSEASG00005002022	POLR3F	100	77.215	Equus_asinus_asinus
ENSSDUG00000022435	polr3f	100	77.215	ENSECAG00000009920	POLR3F	100	77.215	Equus_caballus
ENSSDUG00000022435	polr3f	76	88.000	ENSEEUG00000000184	POLR3F	70	88.000	Erinaceus_europaeus
ENSSDUG00000022435	polr3f	100	81.646	ENSELUG00000001558	polr3f	100	81.646	Esox_lucius
ENSSDUG00000022435	polr3f	100	77.532	ENSFCAG00000013828	POLR3F	100	77.532	Felis_catus
ENSSDUG00000022435	polr3f	86	78.909	ENSFALG00000007623	POLR3F	100	78.909	Ficedula_albicollis
ENSSDUG00000022435	polr3f	100	76.266	ENSFDAG00000002528	POLR3F	100	76.266	Fukomys_damarensis
ENSSDUG00000022435	polr3f	100	81.962	ENSFHEG00000006450	polr3f	100	81.962	Fundulus_heteroclitus
ENSSDUG00000022435	polr3f	100	78.165	ENSGALG00000008749	POLR3F	100	78.165	Gallus_gallus
ENSSDUG00000022435	polr3f	100	83.544	ENSGAFG00000003698	polr3f	100	83.544	Gambusia_affinis
ENSSDUG00000022435	polr3f	100	77.848	ENSGAGG00000006151	POLR3F	100	77.848	Gopherus_agassizii
ENSSDUG00000022435	polr3f	100	77.215	ENSGGOG00000011543	POLR3F	100	77.215	Gorilla_gorilla
ENSSDUG00000022435	polr3f	100	84.494	ENSHBUG00000013806	polr3f	100	84.494	Haplochromis_burtoni
ENSSDUG00000022435	polr3f	100	76.582	ENSHGLG00000011867	POLR3F	100	76.582	Heterocephalus_glaber_female
ENSSDUG00000022435	polr3f	100	76.582	ENSHGLG00100012577	POLR3F	100	76.582	Heterocephalus_glaber_male
ENSSDUG00000022435	polr3f	100	76.582	ENSHCOG00000011751	polr3f	100	76.582	Hippocampus_comes
ENSSDUG00000022435	polr3f	100	79.747	ENSIPUG00000013347	polr3f	100	79.747	Ictalurus_punctatus
ENSSDUG00000022435	polr3f	100	77.532	ENSSTOG00000013588	POLR3F	100	77.532	Ictidomys_tridecemlineatus
ENSSDUG00000022435	polr3f	100	76.899	ENSJJAG00000017513	Polr3f	100	76.899	Jaculus_jaculus
ENSSDUG00000022435	polr3f	86	76.000	ENSKMAG00000016495	polr3f	100	74.909	Kryptolebias_marmoratus
ENSSDUG00000022435	polr3f	71	81.034	ENSLBEG00000011998	polr3f	100	81.034	Labrus_bergylta
ENSSDUG00000022435	polr3f	100	77.215	ENSLACG00000009371	POLR3F	100	77.215	Latimeria_chalumnae
ENSSDUG00000022435	polr3f	100	80.696	ENSLOCG00000015701	polr3f	100	80.696	Lepisosteus_oculatus
ENSSDUG00000022435	polr3f	100	77.215	ENSLAFG00000004929	POLR3F	100	77.215	Loxodonta_africana
ENSSDUG00000022435	polr3f	100	76.899	ENSMFAG00000002227	POLR3F	100	76.899	Macaca_fascicularis
ENSSDUG00000022435	polr3f	86	77.455	ENSMMUG00000004143	POLR3F	100	77.455	Macaca_mulatta
ENSSDUG00000022435	polr3f	100	76.899	ENSMNEG00000033404	POLR3F	100	76.899	Macaca_nemestrina
ENSSDUG00000022435	polr3f	100	76.899	ENSMLEG00000021905	POLR3F	100	76.899	Mandrillus_leucophaeus
ENSSDUG00000022435	polr3f	100	84.494	ENSMAMG00000017975	polr3f	100	84.494	Mastacembelus_armatus
ENSSDUG00000022435	polr3f	100	84.494	ENSMZEG00005015134	polr3f	100	84.494	Maylandia_zebra
ENSSDUG00000022435	polr3f	100	78.797	ENSMGAG00000006691	POLR3F	100	78.797	Meleagris_gallopavo
ENSSDUG00000022435	polr3f	100	76.899	ENSMAUG00000020176	Polr3f	100	76.899	Mesocricetus_auratus
ENSSDUG00000022435	polr3f	100	77.215	ENSMICG00000044519	POLR3F	100	77.215	Microcebus_murinus
ENSSDUG00000022435	polr3f	100	77.215	ENSMOCG00000018352	Polr3f	100	77.215	Microtus_ochrogaster
ENSSDUG00000022435	polr3f	93	85.522	ENSMMOG00000018477	polr3f	100	85.522	Mola_mola
ENSSDUG00000022435	polr3f	100	76.899	ENSMODG00000005624	POLR3F	100	76.899	Monodelphis_domestica
ENSSDUG00000022435	polr3f	100	84.494	ENSMALG00000006685	polr3f	100	84.494	Monopterus_albus
ENSSDUG00000022435	polr3f	100	76.266	MGP_CAROLIEiJ_G0024385	Polr3f	100	76.266	Mus_caroli
ENSSDUG00000022435	polr3f	100	76.266	ENSMUSG00000027427	Polr3f	100	76.266	Mus_musculus
ENSSDUG00000022435	polr3f	100	76.266	MGP_PahariEiJ_G0025829	Polr3f	100	76.266	Mus_pahari
ENSSDUG00000022435	polr3f	100	76.266	MGP_SPRETEiJ_G0025304	Polr3f	100	76.266	Mus_spretus
ENSSDUG00000022435	polr3f	100	65.839	ENSMPUG00000001252	-	100	65.839	Mustela_putorius_furo
ENSSDUG00000022435	polr3f	100	77.532	ENSMLUG00000014844	POLR3F	100	77.532	Myotis_lucifugus
ENSSDUG00000022435	polr3f	100	76.266	ENSNGAG00000010898	Polr3f	100	76.266	Nannospalax_galili
ENSSDUG00000022435	polr3f	100	84.810	ENSNBRG00000020796	polr3f	100	84.810	Neolamprologus_brichardi
ENSSDUG00000022435	polr3f	100	77.215	ENSNLEG00000009778	POLR3F	100	77.215	Nomascus_leucogenys
ENSSDUG00000022435	polr3f	93	71.525	ENSMEUG00000010320	POLR3F	100	71.525	Notamacropus_eugenii
ENSSDUG00000022435	polr3f	100	77.215	ENSOPRG00000003385	POLR3F	100	77.215	Ochotona_princeps
ENSSDUG00000022435	polr3f	100	77.215	ENSODEG00000011521	POLR3F	100	77.215	Octodon_degus
ENSSDUG00000022435	polr3f	100	83.544	ENSONIG00000006858	polr3f	100	83.544	Oreochromis_niloticus
ENSSDUG00000022435	polr3f	100	76.582	ENSOANG00000001253	POLR3F	100	76.582	Ornithorhynchus_anatinus
ENSSDUG00000022435	polr3f	100	77.215	ENSOCUG00000015067	POLR3F	100	77.215	Oryctolagus_cuniculus
ENSSDUG00000022435	polr3f	100	82.911	ENSORLG00000022412	polr3f	100	82.911	Oryzias_latipes
ENSSDUG00000022435	polr3f	100	82.911	ENSORLG00020021944	polr3f	100	82.911	Oryzias_latipes_hni
ENSSDUG00000022435	polr3f	100	76.899	ENSOGAG00000002916	POLR3F	100	76.899	Otolemur_garnettii
ENSSDUG00000022435	polr3f	100	47.651	ENSOARG00000008647	-	100	47.651	Ovis_aries
ENSSDUG00000022435	polr3f	100	77.215	ENSOARG00000000315	-	100	77.215	Ovis_aries
ENSSDUG00000022435	polr3f	100	77.215	ENSPPAG00000036681	POLR3F	100	77.215	Pan_paniscus
ENSSDUG00000022435	polr3f	100	77.532	ENSPPRG00000024604	POLR3F	100	77.532	Panthera_pardus
ENSSDUG00000022435	polr3f	100	77.532	ENSPTIG00000020292	POLR3F	100	77.532	Panthera_tigris_altaica
ENSSDUG00000022435	polr3f	100	77.215	ENSPTRG00000013287	POLR3F	100	77.215	Pan_troglodytes
ENSSDUG00000022435	polr3f	100	76.899	ENSPANG00000025015	POLR3F	100	76.899	Papio_anubis
ENSSDUG00000022435	polr3f	100	80.063	ENSPKIG00000004427	polr3f	100	80.063	Paramormyrops_kingsleyae
ENSSDUG00000022435	polr3f	86	78.909	ENSPSIG00000016613	POLR3F	100	78.909	Pelodiscus_sinensis
ENSSDUG00000022435	polr3f	100	64.189	ENSPMGG00000018350	polr3f	100	65.986	Periophthalmus_magnuspinnatus
ENSSDUG00000022435	polr3f	100	77.215	ENSPEMG00000006966	Polr3f	100	77.215	Peromyscus_maniculatus_bairdii
ENSSDUG00000022435	polr3f	100	69.620	ENSPMAG00000005530	polr3f	100	69.620	Petromyzon_marinus
ENSSDUG00000022435	polr3f	100	76.582	ENSPCIG00000000908	POLR3F	85	76.582	Phascolarctos_cinereus
ENSSDUG00000022435	polr3f	100	83.544	ENSPFOG00000018334	polr3f	100	83.544	Poecilia_formosa
ENSSDUG00000022435	polr3f	100	83.544	ENSPLAG00000021803	polr3f	100	83.544	Poecilia_latipinna
ENSSDUG00000022435	polr3f	100	83.544	ENSPMEG00000013150	polr3f	100	83.544	Poecilia_mexicana
ENSSDUG00000022435	polr3f	100	83.544	ENSPREG00000005278	polr3f	100	83.544	Poecilia_reticulata
ENSSDUG00000022435	polr3f	100	77.215	ENSPPYG00000010737	POLR3F	100	77.215	Pongo_abelii
ENSSDUG00000022435	polr3f	63	71.667	ENSPCAG00000004893	POLR3F	70	71.429	Procavia_capensis
ENSSDUG00000022435	polr3f	100	77.215	ENSPCOG00000004543	POLR3F	100	77.215	Propithecus_coquereli
ENSSDUG00000022435	polr3f	100	77.215	ENSPVAG00000000403	POLR3F	100	77.215	Pteropus_vampyrus
ENSSDUG00000022435	polr3f	100	84.494	ENSPNYG00000016276	polr3f	100	84.494	Pundamilia_nyererei
ENSSDUG00000022435	polr3f	100	81.013	ENSPNAG00000005164	polr3f	100	81.013	Pygocentrus_nattereri
ENSSDUG00000022435	polr3f	100	76.582	ENSRNOG00000007548	Polr3f	85	76.582	Rattus_norvegicus
ENSSDUG00000022435	polr3f	100	76.899	ENSRBIG00000021268	POLR3F	100	76.899	Rhinopithecus_bieti
ENSSDUG00000022435	polr3f	100	76.899	ENSRROG00000039911	POLR3F	100	76.899	Rhinopithecus_roxellana
ENSSDUG00000022435	polr3f	51	31.285	YNR003C	RPC34	56	31.285	Saccharomyces_cerevisiae
ENSSDUG00000022435	polr3f	100	77.532	ENSSBOG00000018207	POLR3F	100	77.532	Saimiri_boliviensis_boliviensis
ENSSDUG00000022435	polr3f	100	59.248	ENSSHAG00000018160	POLR3F	100	59.813	Sarcophilus_harrisii
ENSSDUG00000022435	polr3f	100	79.430	ENSSFOG00015022433	polr3f	100	79.430	Scleropages_formosus
ENSSDUG00000022435	polr3f	100	84.177	ENSSMAG00000021029	polr3f	100	84.177	Scophthalmus_maximus
ENSSDUG00000022435	polr3f	100	88.924	ENSSLDG00000012761	polr3f	100	88.924	Seriola_lalandi_dorsalis
ENSSDUG00000022435	polr3f	100	69.304	ENSSARG00000006039	POLR3F	100	69.304	Sorex_araneus
ENSSDUG00000022435	polr3f	100	77.532	ENSSPUG00000001873	POLR3F	100	77.532	Sphenodon_punctatus
ENSSDUG00000022435	polr3f	100	75.949	ENSSPAG00000002092	polr3f	100	75.949	Stegastes_partitus
ENSSDUG00000022435	polr3f	100	77.532	ENSSSCG00000007095	POLR3F	100	80.172	Sus_scrofa
ENSSDUG00000022435	polr3f	100	78.165	ENSTGUG00000005839	POLR3F	100	78.165	Taeniopygia_guttata
ENSSDUG00000022435	polr3f	100	83.228	ENSTRUG00000012101	polr3f	100	83.228	Takifugu_rubripes
ENSSDUG00000022435	polr3f	100	82.278	ENSTNIG00000006456	polr3f	100	82.278	Tetraodon_nigroviridis
ENSSDUG00000022435	polr3f	80	83.516	ENSTBEG00000007921	POLR3F	74	83.516	Tupaia_belangeri
ENSSDUG00000022435	polr3f	100	77.215	ENSTTRG00000002580	POLR3F	100	77.215	Tursiops_truncatus
ENSSDUG00000022435	polr3f	100	77.215	ENSUMAG00000024944	POLR3F	100	77.215	Ursus_maritimus
ENSSDUG00000022435	polr3f	100	77.532	ENSVPAG00000009063	POLR3F	100	77.532	Vicugna_pacos
ENSSDUG00000022435	polr3f	100	77.215	ENSVVUG00000012925	POLR3F	100	77.215	Vulpes_vulpes
ENSSDUG00000022435	polr3f	100	77.532	ENSXETG00000024898	polr3f	100	77.532	Xenopus_tropicalis
ENSSDUG00000022435	polr3f	86	81.818	ENSXCOG00000010301	polr3f	100	81.818	Xiphophorus_couchianus
ENSSDUG00000022435	polr3f	100	83.228	ENSXMAG00000004604	polr3f	100	83.228	Xiphophorus_maculatus