EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000022684 (Gene tree)
Gene ID: 111231379
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 34308 bases
Position: chrBDQW01000301.1:1290902-1325209
Accession: 111231379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000031598	RRM_5	PF13893.6	4.2e-06	1	1
ENSSDUP00000031578	RRM_5	PF13893.6	4.5e-06	1	1
ENSSDUP00000031589	RRM_5	PF13893.6	4.5e-06	1	1
ENSSDUP00000031573	RRM_5	PF13893.6	4.7e-06	1	1
ENSSDUP00000031588	RRM_5	PF13893.6	4.7e-06	1	1
ENSSDUP00000031598	RRM_1	PF00076.22	8e-39	1	3
ENSSDUP00000031598	RRM_1	PF00076.22	8e-39	2	3
ENSSDUP00000031598	RRM_1	PF00076.22	8e-39	3	3
ENSSDUP00000031578	RRM_1	PF00076.22	9.1e-39	1	3
ENSSDUP00000031578	RRM_1	PF00076.22	9.1e-39	2	3
ENSSDUP00000031578	RRM_1	PF00076.22	9.1e-39	3	3
ENSSDUP00000031589	RRM_1	PF00076.22	9.1e-39	1	3
ENSSDUP00000031589	RRM_1	PF00076.22	9.1e-39	2	3
ENSSDUP00000031589	RRM_1	PF00076.22	9.1e-39	3	3
ENSSDUP00000031573	RRM_1	PF00076.22	1e-38	1	3
ENSSDUP00000031573	RRM_1	PF00076.22	1e-38	2	3
ENSSDUP00000031573	RRM_1	PF00076.22	1e-38	3	3
ENSSDUP00000031588	RRM_1	PF00076.22	1e-38	1	3
ENSSDUP00000031588	RRM_1	PF00076.22	1e-38	2	3
ENSSDUP00000031588	RRM_1	PF00076.22	1e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000032122	-	6727	XM_022758448	ENSSDUP00000031578	611 (aa)	XP_022614169	UPI000BBE31D8
ENSSDUT00000032133	-	6223	-	ENSSDUP00000031589	611 (aa)	-	UPI000BBE31D8
ENSSDUT00000032132	-	6571	XM_022758443	ENSSDUP00000031588	619 (aa)	XP_022614164	UPI000BBE4984
ENSSDUT00000032117	-	6751	XM_022758442	ENSSDUP00000031573	619 (aa)	XP_022614163	UPI000BBE4984
ENSSDUT00000032142	-	1776	XM_022758450	ENSSDUP00000031598	591 (aa)	XP_022614171	-

Gene Model

Click here to download ENSSDUG00000022684's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000022684's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000022684	rbm47	51	54.098	ENSSDUG00000018866	hnrnpr	51	52.484
ENSSDUG00000022684	rbm47	50	67.119	ENSSDUG00000020645	rbm46	59	68.136
ENSSDUG00000022684	rbm47	50	52.980	ENSSDUG00000017716	syncripl	73	46.552
ENSSDUG00000022684	rbm47	50	51.827	ENSSDUG00000010798	syncrip	69	44.811
ENSSDUG00000022684	rbm47	84	50.536	ENSSDUG00000013930	a1cf	87	53.167

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000022684	rbm47	100	81.649	ENSG00000163694	RBM47	100	85.714	Homo_sapiens
ENSSDUG00000022684	rbm47	100	94.968	ENSAPOG00000011062	rbm47	100	95.674	Acanthochromis_polyacanthus
ENSSDUG00000022684	rbm47	100	75.208	ENSAMEG00000009672	RBM47	100	77.537	Ailuropoda_melanoleuca
ENSSDUG00000022684	rbm47	100	93.750	ENSACIG00000011531	rbm47	100	93.750	Amphilophus_citrinellus
ENSSDUG00000022684	rbm47	100	95.922	ENSAOCG00000022245	rbm47	100	95.922	Amphiprion_ocellaris
ENSSDUG00000022684	rbm47	100	95.968	ENSAPEG00000018304	rbm47	100	95.968	Amphiprion_percula
ENSSDUG00000022684	rbm47	100	95.315	ENSATEG00000018400	rbm47	100	95.315	Anabas_testudineus
ENSSDUG00000022684	rbm47	100	77.258	ENSAPLG00000013974	RBM47	100	77.090	Anas_platyrhynchos
ENSSDUG00000022684	rbm47	100	76.539	ENSACAG00000011833	RBM47	100	77.243	Anolis_carolinensis
ENSSDUG00000022684	rbm47	100	82.540	ENSANAG00000029440	RBM47	100	81.566	Aotus_nancymaae
ENSSDUG00000022684	rbm47	100	93.429	ENSACLG00000016902	rbm47	100	94.148	Astatotilapia_calliptera
ENSSDUG00000022684	rbm47	100	82.843	ENSAMXG00000021794	rbm47	100	82.951	Astyanax_mexicanus
ENSSDUG00000022684	rbm47	100	77.219	ENSBTAG00000002356	RBM47	100	78.859	Bos_taurus
ENSSDUG00000022684	rbm47	100	82.540	ENSCJAG00000019385	RBM47	100	81.818	Callithrix_jacchus
ENSSDUG00000022684	rbm47	96	77.875	ENSCAFG00000015898	RBM47	100	77.425	Canis_familiaris
ENSSDUG00000022684	rbm47	82	80.041	ENSCAFG00020010558	RBM47	94	82.493	Canis_lupus_dingo
ENSSDUG00000022684	rbm47	100	77.219	ENSCHIG00000026214	RBM47	100	78.859	Capra_hircus
ENSSDUG00000022684	rbm47	83	87.444	ENSTSYG00000033612	RBM47	93	86.283	Carlito_syrichta
ENSSDUG00000022684	rbm47	100	72.437	ENSCAPG00000008426	RBM47	100	72.437	Cavia_aperea
ENSSDUG00000022684	rbm47	100	82.228	ENSCPOG00000014100	RBM47	100	78.188	Cavia_porcellus
ENSSDUG00000022684	rbm47	100	84.043	ENSCCAG00000030129	-	100	81.313	Cebus_capucinus
ENSSDUG00000022684	rbm47	99	55.630	ENSCCAG00000024397	-	99	55.966	Cebus_capucinus
ENSSDUG00000022684	rbm47	100	81.649	ENSCATG00000042064	RBM47	100	81.061	Cercocebus_atys
ENSSDUG00000022684	rbm47	100	82.493	ENSCLAG00000001684	RBM47	100	82.911	Chinchilla_lanigera
ENSSDUG00000022684	rbm47	100	76.087	ENSCSAG00000017060	RBM47	100	78.500	Chlorocebus_sabaeus
ENSSDUG00000022684	rbm47	85	77.305	ENSCHOG00000011731	RBM47	88	77.354	Choloepus_hoffmanni
ENSSDUG00000022684	rbm47	100	79.264	ENSCPBG00000013831	RBM47	100	79.967	Chrysemys_picta_bellii
ENSSDUG00000022684	rbm47	100	82.540	ENSCANG00000019997	RBM47	100	80.808	Colobus_angolensis_palliatus
ENSSDUG00000022684	rbm47	100	77.188	ENSCGRG00001020102	-	100	78.780	Cricetulus_griseus_chok1gshd
ENSSDUG00000022684	rbm47	100	82.181	ENSCGRG00001000623	-	100	76.872	Cricetulus_griseus_chok1gshd
ENSSDUG00000022684	rbm47	100	75.208	ENSCGRG00000007762	-	100	81.646	Cricetulus_griseus_crigri
ENSSDUG00000022684	rbm47	100	76.923	ENSCGRG00000014760	-	100	78.515	Cricetulus_griseus_crigri
ENSSDUG00000022684	rbm47	100	88.744	ENSCSEG00000004545	rbm47	100	90.725	Cynoglossus_semilaevis
ENSSDUG00000022684	rbm47	99	92.150	ENSCVAG00000020144	rbm47	100	92.621	Cyprinodon_variegatus
ENSSDUG00000022684	rbm47	100	82.764	ENSDARG00000061985	rbm47	100	83.740	Danio_rerio
ENSSDUG00000022684	rbm47	100	77.441	ENSDNOG00000046854	RBM47	100	79.125	Dasypus_novemcinctus
ENSSDUG00000022684	rbm47	100	76.578	ENSDORG00000010144	Rbm47	100	77.741	Dipodomys_ordii
ENSSDUG00000022684	rbm47	97	78.103	ENSETEG00000009194	RBM47	100	78.333	Echinops_telfairi
ENSSDUG00000022684	rbm47	99	58.017	ENSEBUG00000011912	rbm47	99	58.182	Eptatretus_burgeri
ENSSDUG00000022684	rbm47	100	77.349	ENSEASG00005008443	RBM47	100	79.027	Equus_asinus_asinus
ENSSDUG00000022684	rbm47	100	77.349	ENSECAG00000004400	RBM47	100	79.027	Equus_caballus
ENSSDUG00000022684	rbm47	72	89.524	ENSEEUG00000001194	RBM47	75	85.837	Erinaceus_europaeus
ENSSDUG00000022684	rbm47	100	82.581	ENSELUG00000006148	rbm47	100	88.471	Esox_lucius
ENSSDUG00000022684	rbm47	100	77.273	ENSFCAG00000012399	RBM47	100	79.461	Felis_catus
ENSSDUG00000022684	rbm47	100	78.763	ENSFALG00000002861	RBM47	100	79.599	Ficedula_albicollis
ENSSDUG00000022684	rbm47	100	81.867	ENSFDAG00000016326	RBM47	100	77.441	Fukomys_damarensis
ENSSDUG00000022684	rbm47	100	90.525	ENSFHEG00000007938	rbm47	100	90.355	Fundulus_heteroclitus
ENSSDUG00000022684	rbm47	100	83.575	ENSGMOG00000014802	rbm47	100	83.575	Gadus_morhua
ENSSDUG00000022684	rbm47	63	85.372	ENSGALG00000014267	RBM47	99	85.372	Gallus_gallus
ENSSDUG00000022684	rbm47	63	92.225	ENSGAFG00000020571	rbm47	98	92.225	Gambusia_affinis
ENSSDUG00000022684	rbm47	100	91.653	ENSGACG00000016223	rbm47	100	92.112	Gasterosteus_aculeatus
ENSSDUG00000022684	rbm47	100	79.264	ENSGAGG00000020051	RBM47	100	79.967	Gopherus_agassizii
ENSSDUG00000022684	rbm47	100	81.649	ENSGGOG00000001367	RBM47	100	81.061	Gorilla_gorilla
ENSSDUG00000022684	rbm47	100	93.291	ENSHBUG00000003520	rbm47	100	94.148	Haplochromis_burtoni
ENSSDUG00000022684	rbm47	84	64.533	ENSHGLG00000016914	RBM47	100	81.646	Heterocephalus_glaber_female
ENSSDUG00000022684	rbm47	100	82.933	ENSHGLG00100014028	-	100	81.646	Heterocephalus_glaber_male
ENSSDUG00000022684	rbm47	100	69.580	ENSHGLG00100003071	-	100	69.244	Heterocephalus_glaber_male
ENSSDUG00000022684	rbm47	99	92.386	ENSHCOG00000002074	rbm47	99	94.148	Hippocampus_comes
ENSSDUG00000022684	rbm47	100	84.007	ENSIPUG00000004743	rbm47	100	84.680	Ictalurus_punctatus
ENSSDUG00000022684	rbm47	100	80.902	ENSSTOG00000004727	RBM47	100	80.380	Ictidomys_tridecemlineatus
ENSSDUG00000022684	rbm47	97	78.066	ENSJJAG00000013823	Rbm47	100	77.205	Jaculus_jaculus
ENSSDUG00000022684	rbm47	100	91.531	ENSKMAG00000000084	rbm47	100	92.386	Kryptolebias_marmoratus
ENSSDUG00000022684	rbm47	100	94.108	ENSLBEG00000008436	rbm47	100	94.108	Labrus_bergylta
ENSSDUG00000022684	rbm47	100	78.992	ENSLACG00000007196	RBM47	100	79.530	Latimeria_chalumnae
ENSSDUG00000022684	rbm47	100	83.670	ENSLOCG00000012966	rbm47	95	84.202	Lepisosteus_oculatus
ENSSDUG00000022684	rbm47	100	76.728	ENSLAFG00000011998	RBM47	100	78.261	Loxodonta_africana
ENSSDUG00000022684	rbm47	100	81.649	ENSMFAG00000037967	RBM47	100	81.061	Macaca_fascicularis
ENSSDUG00000022684	rbm47	100	76.087	ENSMMUG00000012036	RBM47	100	83.938	Macaca_mulatta
ENSSDUG00000022684	rbm47	100	81.383	ENSMNEG00000040774	RBM47	100	81.061	Macaca_nemestrina
ENSSDUG00000022684	rbm47	100	83.810	ENSMLEG00000041432	RBM47	100	85.714	Mandrillus_leucophaeus
ENSSDUG00000022684	rbm47	99	96.246	ENSMAMG00000019143	rbm47	100	95.420	Mastacembelus_armatus
ENSSDUG00000022684	rbm47	100	93.429	ENSMZEG00005023659	rbm47	100	93.429	Maylandia_zebra
ENSSDUG00000022684	rbm47	100	78.833	ENSMGAG00000012226	RBM47	100	79.534	Meleagris_gallopavo
ENSSDUG00000022684	rbm47	100	81.963	ENSMAUG00000006493	Rbm47	100	81.646	Mesocricetus_auratus
ENSSDUG00000022684	rbm47	100	78.989	ENSMICG00000026417	RBM47	100	82.275	Microcebus_murinus
ENSSDUG00000022684	rbm47	100	81.915	ENSMOCG00000021170	Rbm47	100	81.646	Microtus_ochrogaster
ENSSDUG00000022684	rbm47	100	93.929	ENSMMOG00000007260	rbm47	100	93.453	Mola_mola
ENSSDUG00000022684	rbm47	52	78.778	ENSMODG00000015426	-	97	78.778	Monodelphis_domestica
ENSSDUG00000022684	rbm47	100	77.722	ENSMODG00000007003	RBM47	100	78.392	Monodelphis_domestica
ENSSDUG00000022684	rbm47	100	71.941	ENSMODG00000020561	-	100	73.693	Monodelphis_domestica
ENSSDUG00000022684	rbm47	100	94.184	ENSMALG00000005167	rbm47	100	94.023	Monopterus_albus
ENSSDUG00000022684	rbm47	100	81.649	MGP_CAROLIEiJ_G0027258	Rbm47	100	82.979	Mus_caroli
ENSSDUG00000022684	rbm47	100	81.649	ENSMUSG00000070780	Rbm47	100	82.979	Mus_musculus
ENSSDUG00000022684	rbm47	100	81.915	MGP_PahariEiJ_G0017040	Rbm47	100	83.245	Mus_pahari
ENSSDUG00000022684	rbm47	100	81.649	MGP_SPRETEiJ_G0028253	Rbm47	100	82.979	Mus_spretus
ENSSDUG00000022684	rbm47	100	75.920	ENSMPUG00000006177	RBM47	94	77.759	Mustela_putorius_furo
ENSSDUG00000022684	rbm47	100	77.517	ENSMLUG00000000889	RBM47	100	78.523	Myotis_lucifugus
ENSSDUG00000022684	rbm47	100	76.333	ENSNGAG00000003325	Rbm47	100	77.333	Nannospalax_galili
ENSSDUG00000022684	rbm47	100	93.517	ENSNBRG00000015092	rbm47	100	93.517	Neolamprologus_brichardi
ENSSDUG00000022684	rbm47	100	81.649	ENSNLEG00000017151	RBM47	100	84.574	Nomascus_leucogenys
ENSSDUG00000022684	rbm47	71	80.896	ENSMEUG00000009516	-	99	80.896	Notamacropus_eugenii
ENSSDUG00000022684	rbm47	76	85.477	ENSOPRG00000016507	-	75	85.477	Ochotona_princeps
ENSSDUG00000022684	rbm47	100	76.639	ENSODEG00000004873	RBM47	100	78.151	Octodon_degus
ENSSDUG00000022684	rbm47	100	93.312	ENSONIG00000009061	rbm47	100	93.475	Oreochromis_niloticus
ENSSDUG00000022684	rbm47	100	77.090	ENSOANG00000008978	RBM47	100	79.132	Ornithorhynchus_anatinus
ENSSDUG00000022684	rbm47	100	76.923	ENSOCUG00000012034	RBM47	100	78.559	Oryctolagus_cuniculus
ENSSDUG00000022684	rbm47	99	93.493	ENSORLG00000005847	rbm47	100	92.386	Oryzias_latipes
ENSSDUG00000022684	rbm47	99	93.664	ENSORLG00020005154	rbm47	100	92.386	Oryzias_latipes_hni
ENSSDUG00000022684	rbm47	99	93.493	ENSORLG00015000066	rbm47	100	92.640	Oryzias_latipes_hsok
ENSSDUG00000022684	rbm47	99	93.139	ENSOMEG00000010730	rbm47	100	91.326	Oryzias_melastigma
ENSSDUG00000022684	rbm47	100	71.044	ENSOGAG00000025193	-	100	72.391	Otolemur_garnettii
ENSSDUG00000022684	rbm47	100	76.087	ENSOGAG00000029367	-	100	77.926	Otolemur_garnettii
ENSSDUG00000022684	rbm47	100	69.347	ENSOARG00000012711	RBM47	100	70.973	Ovis_aries
ENSSDUG00000022684	rbm47	100	77.027	ENSPPAG00000029763	RBM47	95	84.574	Pan_paniscus
ENSSDUG00000022684	rbm47	100	81.530	ENSPPRG00000012873	RBM47	99	83.733	Panthera_pardus
ENSSDUG00000022684	rbm47	85	76.786	ENSPTIG00000017046	RBM47	100	77.381	Panthera_tigris_altaica
ENSSDUG00000022684	rbm47	100	81.649	ENSPTRG00000016006	RBM47	100	81.061	Pan_troglodytes
ENSSDUG00000022684	rbm47	100	81.649	ENSPANG00000005980	RBM47	100	81.061	Papio_anubis
ENSSDUG00000022684	rbm47	97	82.087	ENSPKIG00000005037	rbm47	100	80.066	Paramormyrops_kingsleyae
ENSSDUG00000022684	rbm47	99	87.297	ENSPKIG00000013431	RBM47	98	84.755	Paramormyrops_kingsleyae
ENSSDUG00000022684	rbm47	89	80.718	ENSPSIG00000017516	RBM47	97	80.718	Pelodiscus_sinensis
ENSSDUG00000022684	rbm47	96	93.838	ENSPMGG00000018540	rbm47	100	91.878	Periophthalmus_magnuspinnatus
ENSSDUG00000022684	rbm47	100	81.915	ENSPEMG00000011088	Rbm47	100	83.245	Peromyscus_maniculatus_bairdii
ENSSDUG00000022684	rbm47	100	89.448	ENSPFOG00000007997	rbm47	100	89.448	Poecilia_formosa
ENSSDUG00000022684	rbm47	100	89.431	ENSPLAG00000002072	rbm47	100	91.689	Poecilia_latipinna
ENSSDUG00000022684	rbm47	100	89.933	ENSPMEG00000017492	rbm47	100	91.094	Poecilia_mexicana
ENSSDUG00000022684	rbm47	100	89.727	ENSPREG00000008456	rbm47	100	91.957	Poecilia_reticulata
ENSSDUG00000022684	rbm47	97	68.268	ENSPPYG00000014688	RBM47	98	69.402	Pongo_abelii
ENSSDUG00000022684	rbm47	81	81.500	ENSPCAG00000011879	RBM47	81	84.250	Procavia_capensis
ENSSDUG00000022684	rbm47	96	84.507	ENSPCOG00000023451	RBM47	100	83.200	Propithecus_coquereli
ENSSDUG00000022684	rbm47	100	75.626	ENSPVAG00000003812	RBM47	100	77.462	Pteropus_vampyrus
ENSSDUG00000022684	rbm47	100	93.053	ENSPNYG00000022868	rbm47	100	93.053	Pundamilia_nyererei
ENSSDUG00000022684	rbm47	97	87.002	ENSPNAG00000007940	rbm47	100	85.413	Pygocentrus_nattereri
ENSSDUG00000022684	rbm47	100	75.920	ENSRNOG00000002408	Rbm47	100	77.759	Rattus_norvegicus
ENSSDUG00000022684	rbm47	100	82.540	ENSRBIG00000039601	RBM47	100	80.808	Rhinopithecus_bieti
ENSSDUG00000022684	rbm47	100	82.540	ENSRROG00000044696	RBM47	100	80.808	Rhinopithecus_roxellana
ENSSDUG00000022684	rbm47	100	75.084	ENSSBOG00000028475	RBM47	100	81.276	Saimiri_boliviensis_boliviensis
ENSSDUG00000022684	rbm47	100	77.815	ENSSHAG00000017576	RBM47	100	78.655	Sarcophilus_harrisii
ENSSDUG00000022684	rbm47	100	79.530	ENSSFOG00015024101	RBM47	100	79.530	Scleropages_formosus
ENSSDUG00000022684	rbm47	97	82.199	ENSSFOG00015012445	rbm47	100	78.974	Scleropages_formosus
ENSSDUG00000022684	rbm47	100	93.538	ENSSMAG00000009744	rbm47	100	93.267	Scophthalmus_maximus
ENSSDUG00000022684	rbm47	100	99.354	ENSSLDG00000003109	rbm47	100	99.354	Seriola_lalandi_dorsalis
ENSSDUG00000022684	rbm47	85	79.733	ENSSARG00000001735	RBM47	75	82.183	Sorex_araneus
ENSSDUG00000022684	rbm47	100	83.598	ENSSPUG00000007515	RBM47	100	83.598	Sphenodon_punctatus
ENSSDUG00000022684	rbm47	100	97.545	ENSSPAG00000001257	rbm47	100	98.649	Stegastes_partitus
ENSSDUG00000022684	rbm47	100	82.011	ENSSSCG00000008796	RBM47	100	78.523	Sus_scrofa
ENSSDUG00000022684	rbm47	100	78.392	ENSTGUG00000008705	RBM47	100	79.229	Taeniopygia_guttata
ENSSDUG00000022684	rbm47	100	91.892	ENSTRUG00000014050	rbm47	100	91.892	Takifugu_rubripes
ENSSDUG00000022684	rbm47	100	91.653	ENSTNIG00000006127	rbm47	100	91.653	Tetraodon_nigroviridis
ENSSDUG00000022684	rbm47	77	80.749	ENSTBEG00000001607	RBM47	76	81.867	Tupaia_belangeri
ENSSDUG00000022684	rbm47	100	77.946	ENSTTRG00000002839	RBM47	100	78.620	Tursiops_truncatus
ENSSDUG00000022684	rbm47	100	76.756	ENSUAMG00000021346	RBM47	100	78.094	Ursus_americanus
ENSSDUG00000022684	rbm47	52	85.714	ENSVPAG00000000641	-	56	80.690	Vicugna_pacos
ENSSDUG00000022684	rbm47	96	78.223	ENSVVUG00000014774	RBM47	100	77.554	Vulpes_vulpes
ENSSDUG00000022684	rbm47	100	78.094	ENSXETG00000012802	rbm47	100	78.428	Xenopus_tropicalis
ENSSDUG00000022684	rbm47	88	92.225	ENSXCOG00000000780	rbm47	100	92.225	Xiphophorus_couchianus
ENSSDUG00000022684	rbm47	100	91.521	ENSXMAG00000009874	rbm47	100	91.521	Xiphophorus_maculatus