EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000022697 (Gene tree)
Gene ID
111221920
Gene Symbol
-
Alias
-
Full Name
RNA-binding protein Musashi homolog 1-like
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Minus strand
Length
23802 bases
Position
chrBDQW01000088.1:10728001-10751802
Accession
111221920
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000031594RRM_1PF00076.222.1e-3312
ENSSDUP00000031594RRM_1PF00076.222.1e-3322
ENSSDUP00000031606RRM_1PF00076.222.5e-2912
ENSSDUP00000031606RRM_1PF00076.222.5e-2922
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000032138-2392XM_022745514ENSSDUP00000031594350 (aa)XP_022601235UPI000BBE4701
ENSSDUT00000032150-969-ENSSDUP00000031606322 (aa)--
Gene Model
Click here to download ENSSDUG00000022697's gene model file
Pathways
Pathway IDPathway NameSource
sdu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000022697's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000022697-5340.107ENSSDUG00000000381hnrnpa39633.684
ENSSDUG00000022697-5036.723ENSSDUG00000002431-8436.723
ENSSDUG00000022697-5445.503ENSSDUG00000004787hnrnpaba8337.809
ENSSDUG00000022697-5342.784ENSSDUG00000009050-8638.197
ENSSDUG00000022697-5232.927ENSSDUG00000017670TRA2B5332.927
ENSSDUG00000022697-5340.642ENSSDUG00000013908hnrnpa1a8540.909
ENSSDUG00000022697-9130.208ENSSDUG00000022611rbm388830.208
ENSSDUG00000022697-10069.301ENSSDUG00000014507msi2a10069.301
ENSSDUG00000022697-5134.868ENSSDUG00000002394-8637.975
ENSSDUG00000022697-9769.329ENSSDUG00000021968-9976.316
ENSSDUG00000022697-5744.500ENSSDUG00000010792hnrnpd7740.476
ENSSDUG00000022697-10092.593ENSSDUG00000001027MSI110092.593
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000022697-10083.516ENSG00000135097MSI19985.776Homo_sapiens
ENSSDUG00000022697-10092.593ENSAPOG00000023458-10092.593Acanthochromis_polyacanthus
ENSSDUG00000022697-10099.143ENSAPOG00000003191MSI110099.143Acanthochromis_polyacanthus
ENSSDUG00000022697-9675.967ENSAMEG00000013302MSI18392.308Ailuropoda_melanoleuca
ENSSDUG00000022697-9594.444ENSACIG00000017754-7894.444Amphilophus_citrinellus
ENSSDUG00000022697-9982.390ENSAOCG00000009031-9583.333Amphiprion_ocellaris
ENSSDUG00000022697-10099.143ENSAOCG00000003804MSI110099.143Amphiprion_ocellaris
ENSSDUG00000022697-10099.143ENSAPEG00000003245MSI110099.143Amphiprion_percula
ENSSDUG00000022697-10092.593ENSAPEG00000006857-8492.593Amphiprion_percula
ENSSDUG00000022697-10088.235ENSATEG00000017059MSI110088.235Anabas_testudineus
ENSSDUG00000022697-10090.960ENSATEG00000023779-10090.960Anabas_testudineus
ENSSDUG00000022697-10083.702ENSACAG00000002762MSI110084.530Anolis_carolinensis
ENSSDUG00000022697-8282.986ENSANAG00000027901-8882.986Aotus_nancymaae
ENSSDUG00000022697-10083.516ENSANAG00000027151MSI110083.516Aotus_nancymaae
ENSSDUG00000022697-10092.857ENSACLG00000000117-10093.884Astatotilapia_calliptera
ENSSDUG00000022697-10098.860ENSACLG00000011230MSI110098.860Astatotilapia_calliptera
ENSSDUG00000022697-9489.969ENSAMXG00000038960msi17689.969Astyanax_mexicanus
ENSSDUG00000022697-9787.220ENSBTAG00000009800MSI110085.897Bos_taurus
ENSSDUG00000022697-9787.220ENSCJAG00000008578MSI110083.516Callithrix_jacchus
ENSSDUG00000022697-10083.242ENSCAFG00000010283MSI110083.242Canis_familiaris
ENSSDUG00000022697-9485.531ENSCAFG00020020585MSI110085.531Canis_lupus_dingo
ENSSDUG00000022697-10082.114ENSCHIG00000024304MSI110082.114Capra_hircus
ENSSDUG00000022697-9485.015ENSTSYG00000033949MSI19585.015Carlito_syrichta
ENSSDUG00000022697-9485.714ENSCAPG00000003919MSI17885.714Cavia_aperea
ENSSDUG00000022697-9981.065ENSCPOG00000012361MSI110085.673Cavia_porcellus
ENSSDUG00000022697-10083.516ENSCCAG00000035567MSI110083.516Cebus_capucinus
ENSSDUG00000022697-10083.516ENSCATG00000030019MSI110083.516Cercocebus_atys
ENSSDUG00000022697-9981.065ENSCLAG00000011329MSI110085.673Chinchilla_lanigera
ENSSDUG00000022697-7881.720ENSCSAG00000002265MSI19681.720Chlorocebus_sabaeus
ENSSDUG00000022697-10086.969ENSCPBG00000011349MSI110086.969Chrysemys_picta_bellii
ENSSDUG00000022697-9485.061ENSCANG00000040651MSI110085.061Colobus_angolensis_palliatus
ENSSDUG00000022697-10083.516ENSCGRG00001018883Msi110083.516Cricetulus_griseus_chok1gshd
ENSSDUG00000022697-9782.477ENSCGRG00000002191Msi17285.106Cricetulus_griseus_crigri
ENSSDUG00000022697-9784.295ENSCSEG00000011032MSI110084.295Cynoglossus_semilaevis
ENSSDUG00000022697-10098.571ENSCSEG00000005834-10098.571Cynoglossus_semilaevis
ENSSDUG00000022697-10091.429ENSCSEG00000008352-10091.429Cynoglossus_semilaevis
ENSSDUG00000022697-5173.134ENSCVAG00000017430zgc:1107969473.134Cyprinodon_variegatus
ENSSDUG00000022697-7680.645ENSCVAG00000017463-8980.645Cyprinodon_variegatus
ENSSDUG00000022697-10093.143ENSCVAG00000009100MSI110093.143Cyprinodon_variegatus
ENSSDUG00000022697-7992.093ENSDARG00000102015CABZ01037298.19892.093Danio_rerio
ENSSDUG00000022697-9686.084ENSDARG00000010710msi110092.523Danio_rerio
ENSSDUG00000022697-9481.962ENSDNOG00000005713MSI19181.962Dasypus_novemcinctus
ENSSDUG00000022697-9782.477ENSDORG00000005610Msi19484.431Dipodomys_ordii
ENSSDUG00000022697-9482.012ENSETEG00000004756MSI110082.012Echinops_telfairi
ENSSDUG00000022697-9787.220ENSEASG00005004736MSI19885.897Equus_asinus_asinus
ENSSDUG00000022697-9787.220ENSECAG00000017526MSI110083.516Equus_caballus
ENSSDUG00000022697-9487.462ENSELUG00000023280-10087.156Esox_lucius
ENSSDUG00000022697-9486.246ENSELUG00000023219MSI19286.246Esox_lucius
ENSSDUG00000022697-9787.220ENSFCAG00000011007MSI110083.516Felis_catus
ENSSDUG00000022697-9489.333ENSFALG00000007574MSI110089.333Ficedula_albicollis
ENSSDUG00000022697-9484.756ENSFDAG00000019586MSI110084.756Fukomys_damarensis
ENSSDUG00000022697-10098.000ENSFHEG00000003560-10098.000Fundulus_heteroclitus
ENSSDUG00000022697-10092.877ENSFHEG00000022446MSI110092.877Fundulus_heteroclitus
ENSSDUG00000022697-10086.197ENSGMOG00000017838-10086.197Gadus_morhua
ENSSDUG00000022697-10091.143ENSGMOG00000001006MSI19990.857Gadus_morhua
ENSSDUG00000022697-9490.076ENSGALG00000007227MSI19875.573Gallus_gallus
ENSSDUG00000022697-9497.866ENSGAFG00000021522MSI19497.866Gambusia_affinis
ENSSDUG00000022697-10070.822ENSGAFG00000005860-10070.822Gambusia_affinis
ENSSDUG00000022697-10090.883ENSGACG00000012679MSI110090.883Gasterosteus_aculeatus
ENSSDUG00000022697-10088.430ENSGACG00000008674-10088.430Gasterosteus_aculeatus
ENSSDUG00000022697-10086.686ENSGAGG00000016037MSI110086.686Gopherus_agassizii
ENSSDUG00000022697-9485.350ENSGGOG00000010328MSI110085.350Gorilla_gorilla
ENSSDUG00000022697-10092.857ENSHBUG00000011841-10092.857Haplochromis_burtoni
ENSSDUG00000022697-10098.860ENSHBUG00000021921MSI110098.860Haplochromis_burtoni
ENSSDUG00000022697-10083.242ENSHGLG00000012782MSI110083.242Heterocephalus_glaber_female
ENSSDUG00000022697-9484.756ENSHGLG00100016848MSI110084.756Heterocephalus_glaber_male
ENSSDUG00000022697-10087.853ENSHCOG00000012067-10087.853Hippocampus_comes
ENSSDUG00000022697-9989.937ENSHCOG00000012019MSI19596.178Hippocampus_comes
ENSSDUG00000022697-10088.604ENSIPUG00000001976msi110088.604Ictalurus_punctatus
ENSSDUG00000022697-9485.531ENSSTOG00000009799MSI110085.531Ictidomys_tridecemlineatus
ENSSDUG00000022697-10083.516ENSJJAG00000010463Msi110083.516Jaculus_jaculus
ENSSDUG00000022697-10072.571ENSJJAG00000010643-10072.571Jaculus_jaculus
ENSSDUG00000022697-10092.571ENSKMAG00000011251MSI110092.571Kryptolebias_marmoratus
ENSSDUG00000022697-9991.195ENSKMAG00000019877-10092.049Kryptolebias_marmoratus
ENSSDUG00000022697-10099.714ENSLBEG00000001375-10099.714Labrus_bergylta
ENSSDUG00000022697-10092.877ENSLBEG00000008789MSI110092.877Labrus_bergylta
ENSSDUG00000022697-9980.952ENSLACG00000018287MSI110083.430Latimeria_chalumnae
ENSSDUG00000022697-5276.786ENSLOCG00000008618zgc:1107967176.786Lepisosteus_oculatus
ENSSDUG00000022697-9675.316ENSLAFG00000009412MSI110076.133Loxodonta_africana
ENSSDUG00000022697-9981.065ENSMFAG00000001798MSI110085.673Macaca_fascicularis
ENSSDUG00000022697-9485.673ENSMMUG00000031527MSI19684.770Macaca_mulatta
ENSSDUG00000022697-9787.220ENSMNEG00000040034MSI19885.897Macaca_nemestrina
ENSSDUG00000022697-9485.061ENSMLEG00000003921MSI110085.061Mandrillus_leucophaeus
ENSSDUG00000022697-10092.000ENSMAMG00000002279MSI110092.000Mastacembelus_armatus
ENSSDUG00000022697-10098.286ENSMAMG00000018426-10098.286Mastacembelus_armatus
ENSSDUG00000022697-10092.857ENSMZEG00005000340-10092.857Maylandia_zebra
ENSSDUG00000022697-10098.860ENSMZEG00005026892MSI110098.860Maylandia_zebra
ENSSDUG00000022697-6793.491ENSMGAG00000016518-10093.491Meleagris_gallopavo
ENSSDUG00000022697-6988.017ENSMAUG00000016820Msi19988.017Mesocricetus_auratus
ENSSDUG00000022697-10083.516ENSMICG00000033181MSI110083.516Microcebus_murinus
ENSSDUG00000022697-10083.242ENSMOCG00000002286Msi110083.242Microtus_ochrogaster
ENSSDUG00000022697-10094.099ENSMMOG00000012265-10094.099Mola_mola
ENSSDUG00000022697-9782.051ENSMMOG00000010492MSI19682.051Mola_mola
ENSSDUG00000022697-9657.270ENSMODG00000003189-10059.036Monodelphis_domestica
ENSSDUG00000022697-10092.857ENSMALG00000017889MSI110092.857Monopterus_albus
ENSSDUG00000022697-9498.165ENSMALG00000001426-10098.165Monopterus_albus
ENSSDUG00000022697-10082.967MGP_CAROLIEiJ_G0027626Msi110084.184Mus_caroli
ENSSDUG00000022697-10082.967ENSMUSG00000054256Msi19987.654Mus_musculus
ENSSDUG00000022697-10085.795MGP_PahariEiJ_G0024206Msi110085.795Mus_pahari
ENSSDUG00000022697-10082.967MGP_SPRETEiJ_G0028624Msi110084.184Mus_spretus
ENSSDUG00000022697-9485.531ENSMPUG00000003168MSI110085.531Mustela_putorius_furo
ENSSDUG00000022697-9476.190ENSMLUG00000010313MSI110076.190Myotis_lucifugus
ENSSDUG00000022697-9782.477ENSNGAG00000014508Msi19185.106Nannospalax_galili
ENSSDUG00000022697-10092.857ENSNBRG00000000841-10092.857Neolamprologus_brichardi
ENSSDUG00000022697-8889.754ENSNBRG00000018012MSI19989.754Neolamprologus_brichardi
ENSSDUG00000022697-9672.948ENSNLEG00000015636MSI110075.305Nomascus_leucogenys
ENSSDUG00000022697-9466.463ENSMEUG00000015759MSI110066.463Notamacropus_eugenii
ENSSDUG00000022697-9077.460ENSOPRG00000016879MSI110077.460Ochotona_princeps
ENSSDUG00000022697-9485.061ENSODEG00000006328MSI110085.061Octodon_degus
ENSSDUG00000022697-10095.604ENSONIG00000019452-10095.604Oreochromis_niloticus
ENSSDUG00000022697-10092.857ENSONIG00000011182MSI110092.857Oreochromis_niloticus
ENSSDUG00000022697-9485.852ENSOCUG00000027716MSI110085.852Oryctolagus_cuniculus
ENSSDUG00000022697-10097.429ENSORLG00000029593MSI110097.429Oryzias_latipes
ENSSDUG00000022697-10092.308ENSORLG00000019978-10092.308Oryzias_latipes
ENSSDUG00000022697-10092.308ENSORLG00020001208-7192.308Oryzias_latipes_hni
ENSSDUG00000022697-10097.429ENSORLG00020008266MSI19991.195Oryzias_latipes_hni
ENSSDUG00000022697-10097.429ENSORLG00015003916MSI110097.429Oryzias_latipes_hsok
ENSSDUG00000022697-10092.308ENSORLG00015013672-7687.464Oryzias_latipes_hsok
ENSSDUG00000022697-10092.593ENSOMEG00000017536MSI110092.593Oryzias_melastigma
ENSSDUG00000022697-10097.714ENSOMEG00000002272-10097.714Oryzias_melastigma
ENSSDUG00000022697-9981.868ENSOGAG00000003847MSI19981.868Otolemur_garnettii
ENSSDUG00000022697-9482.424ENSOARG00000012097MSI110082.424Ovis_aries
ENSSDUG00000022697-9485.061ENSPPAG00000043073MSI110085.061Pan_paniscus
ENSSDUG00000022697-10083.516ENSPPRG00000000370MSI110083.516Panthera_pardus
ENSSDUG00000022697-9485.531ENSPTIG00000008913MSI110085.531Panthera_tigris_altaica
ENSSDUG00000022697-10083.516ENSPTRG00000005531MSI110083.516Pan_troglodytes
ENSSDUG00000022697-10083.242ENSPANG00000006335MSI110083.242Papio_anubis
ENSSDUG00000022697-10091.429ENSPKIG00000023575-10091.429Paramormyrops_kingsleyae
ENSSDUG00000022697-10094.571ENSPKIG00000016497MSI110094.571Paramormyrops_kingsleyae
ENSSDUG00000022697-8480.349ENSPSIG00000009621-10082.456Pelodiscus_sinensis
ENSSDUG00000022697-9486.280ENSPSIG00000011608-9386.280Pelodiscus_sinensis
ENSSDUG00000022697-9974.154ENSPMGG00000007743-9871.264Periophthalmus_magnuspinnatus
ENSSDUG00000022697-9388.294ENSPMGG00000000514MSI19788.294Periophthalmus_magnuspinnatus
ENSSDUG00000022697-9781.982ENSPEMG00000010491Msi19583.680Peromyscus_maniculatus_bairdii
ENSSDUG00000022697-10092.593ENSPFOG00000013113MSI110092.593Poecilia_formosa
ENSSDUG00000022697-10098.571ENSPFOG00000008319-8698.571Poecilia_formosa
ENSSDUG00000022697-10092.593ENSPLAG00000014025-10092.593Poecilia_latipinna
ENSSDUG00000022697-10098.571ENSPLAG00000012431-9798.571Poecilia_latipinna
ENSSDUG00000022697-10092.593ENSPMEG00000012796MSI110092.593Poecilia_mexicana
ENSSDUG00000022697-10098.000ENSPMEG00000007025-8698.000Poecilia_mexicana
ENSSDUG00000022697-9893.671ENSPREG00000021416-9493.671Poecilia_reticulata
ENSSDUG00000022697-8188.835ENSPREG00000014574-10088.835Poecilia_reticulata
ENSSDUG00000022697-10082.692ENSPPYG00000005027MSI110082.692Pongo_abelii
ENSSDUG00000022697-7688.832ENSPCAG00000002300MSI17288.832Procavia_capensis
ENSSDUG00000022697-10083.516ENSPCOG00000017341MSI110083.516Propithecus_coquereli
ENSSDUG00000022697-9468.902ENSPVAG00000002225MSI110068.902Pteropus_vampyrus
ENSSDUG00000022697-10092.857ENSPNYG00000002529-10092.857Pundamilia_nyererei
ENSSDUG00000022697-10098.860ENSPNYG00000004379MSI110098.860Pundamilia_nyererei
ENSSDUG00000022697-10089.174ENSPNAG00000019337msi110089.174Pygocentrus_nattereri
ENSSDUG00000022697-9485.209ENSRNOG00000001156Msi110085.209Rattus_norvegicus
ENSSDUG00000022697-9485.531ENSRBIG00000036889MSI110085.531Rhinopithecus_bieti
ENSSDUG00000022697-9484.848ENSRROG00000041076MSI19384.848Rhinopithecus_roxellana
ENSSDUG00000022697-9485.673ENSSBOG00000030259MSI19985.673Saimiri_boliviensis_boliviensis
ENSSDUG00000022697-9475.163ENSSHAG00000006834MSI110075.163Sarcophilus_harrisii
ENSSDUG00000022697-9496.341ENSSFOG00015014964-9596.341Scleropages_formosus
ENSSDUG00000022697-9493.353ENSSFOG00015005350MSI19693.353Scleropages_formosus
ENSSDUG00000022697-9497.701ENSSMAG00000009156-7397.525Scophthalmus_maximus
ENSSDUG00000022697-10087.578ENSSMAG00000018824MSI110087.578Scophthalmus_maximus
ENSSDUG00000022697-100100.000ENSSLDG00000018706-100100.000Seriola_lalandi_dorsalis
ENSSDUG00000022697-10092.593ENSSLDG00000016832MSI110092.593Seriola_lalandi_dorsalis
ENSSDUG00000022697-10086.686ENSSPUG00000015741MSI110086.686Sphenodon_punctatus
ENSSDUG00000022697-9499.390ENSSPAG00000013098-10099.390Stegastes_partitus
ENSSDUG00000022697-8177.073ENSSPAG00000014085-10077.073Stegastes_partitus
ENSSDUG00000022697-5580.247ENSSPAG00000015573zgc:1107968280.247Stegastes_partitus
ENSSDUG00000022697-9786.901ENSSSCG00000029365MSI110085.209Sus_scrofa
ENSSDUG00000022697-9486.765ENSTGUG00000009534MSI110086.765Taeniopygia_guttata
ENSSDUG00000022697-9984.615ENSTRUG00000015636-8384.000Takifugu_rubripes
ENSSDUG00000022697-8191.244ENSTRUG00000016249MSI110082.213Takifugu_rubripes
ENSSDUG00000022697-5081.818ENSTRUG00000021586-9981.818Takifugu_rubripes
ENSSDUG00000022697-9963.777ENSTNIG00000019814-9766.471Tetraodon_nigroviridis
ENSSDUG00000022697-10087.535ENSTNIG00000011469MSI110087.535Tetraodon_nigroviridis
ENSSDUG00000022697-9476.923ENSTBEG00000007182MSI110076.557Tupaia_belangeri
ENSSDUG00000022697-7687.594ENSTTRG00000005663MSI17887.594Tursiops_truncatus
ENSSDUG00000022697-7583.486ENSUAMG00000015514MSI19487.037Ursus_americanus
ENSSDUG00000022697-9684.281ENSUMAG00000006176MSI18882.886Ursus_maritimus
ENSSDUG00000022697-9783.742ENSVVUG00000020993MSI110084.384Vulpes_vulpes
ENSSDUG00000022697-10083.714ENSXETG00000012216msi110084.000Xenopus_tropicalis
ENSSDUG00000022697-9978.931ENSXCOG00000017605MSI18980.183Xiphophorus_couchianus
ENSSDUG00000022697-10098.286ENSXMAG00000018237-10098.286Xiphophorus_maculatus
ENSSDUG00000022697-10093.143ENSXMAG00000027103MSI110081.503Xiphophorus_maculatus

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