EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000022871 (Gene tree)
Gene ID: 111235223
Gene Symbol: rrp12
Alias: im:7142677|im:7149218|zgc:111822
Full Name: ribosomal RNA processing 12 homolog
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11562 bases
Position: chrBDQW01000024.1:429157-440718
Accession: 111235223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000031846	NUC173	PF08161.12	9.8e-73	1	1
ENSSDUP00000031837	NUC173	PF08161.12	1.2e-72	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000032387	-	5832	XM_022763615	ENSSDUP00000031837	1287 (aa)	XP_022619336	UPI000BBE5C8D
ENSSDUT00000032396	-	3762	-	ENSSDUP00000031846	1253 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000022871's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000022871's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000022871	rrp12	99	62.750	ENSG00000052749	RRP12	100	75.568	Homo_sapiens
ENSSDUG00000022871	rrp12	99	88.249	ENSAPOG00000013355	rrp12	99	88.249	Acanthochromis_polyacanthus
ENSSDUG00000022871	rrp12	99	62.644	ENSAMEG00000000134	RRP12	99	63.003	Ailuropoda_melanoleuca
ENSSDUG00000022871	rrp12	99	90.703	ENSACIG00000022673	rrp12	99	90.703	Amphilophus_citrinellus
ENSSDUG00000022871	rrp12	99	91.484	ENSAOCG00000016149	rrp12	99	91.484	Amphiprion_ocellaris
ENSSDUG00000022871	rrp12	99	89.564	ENSAPEG00000016023	rrp12	99	89.564	Amphiprion_percula
ENSSDUG00000022871	rrp12	99	91.342	ENSATEG00000022627	rrp12	99	91.342	Anabas_testudineus
ENSSDUG00000022871	rrp12	97	59.475	ENSAPLG00000014387	RRP12	99	60.144	Anas_platyrhynchos
ENSSDUG00000022871	rrp12	99	60.756	ENSACAG00000002175	RRP12	99	60.434	Anolis_carolinensis
ENSSDUG00000022871	rrp12	92	74.342	ENSANAG00000037485	RRP12	99	74.342	Aotus_nancymaae
ENSSDUG00000022871	rrp12	99	90.156	ENSACLG00000007354	rrp12	99	90.156	Astatotilapia_calliptera
ENSSDUG00000022871	rrp12	99	76.183	ENSAMXG00000012852	rrp12	99	76.269	Astyanax_mexicanus
ENSSDUG00000022871	rrp12	99	62.318	ENSBTAG00000002191	RRP12	99	73.377	Bos_taurus
ENSSDUG00000022871	rrp12	85	60.091	ENSCJAG00000016549	-	99	60.420	Callithrix_jacchus
ENSSDUG00000022871	rrp12	99	62.270	ENSCAFG00000009043	RRP12	99	62.703	Canis_familiaris
ENSSDUG00000022871	rrp12	99	62.270	ENSCAFG00020005991	RRP12	99	62.703	Canis_lupus_dingo
ENSSDUG00000022871	rrp12	99	60.244	ENSCHIG00000011876	RRP12	99	60.399	Capra_hircus
ENSSDUG00000022871	rrp12	53	54.663	ENSTSYG00000030210	-	98	55.572	Carlito_syrichta
ENSSDUG00000022871	rrp12	97	56.310	ENSCAPG00000008991	RRP12	97	56.748	Cavia_aperea
ENSSDUG00000022871	rrp12	100	61.912	ENSCPOG00000004215	RRP12	99	62.345	Cavia_porcellus
ENSSDUG00000022871	rrp12	79	65.481	ENSCCAG00000024088	RRP12	98	67.176	Cebus_capucinus
ENSSDUG00000022871	rrp12	70	57.675	ENSCCAG00000033123	-	82	57.883	Cebus_capucinus
ENSSDUG00000022871	rrp12	99	58.493	ENSCATG00000045310	RRP12	99	59.242	Cercocebus_atys
ENSSDUG00000022871	rrp12	100	61.171	ENSCLAG00000003753	RRP12	99	61.598	Chinchilla_lanigera
ENSSDUG00000022871	rrp12	88	60.313	ENSCSAG00000005877	RRP12	99	61.174	Chlorocebus_sabaeus
ENSSDUG00000022871	rrp12	59	69.934	ENSCHOG00000003095	-	60	69.934	Choloepus_hoffmanni
ENSSDUG00000022871	rrp12	94	64.745	ENSCPBG00000011935	RRP12	97	64.925	Chrysemys_picta_bellii
ENSSDUG00000022871	rrp12	63	39.620	ENSCSAVG00000006059	-	99	40.197	Ciona_savignyi
ENSSDUG00000022871	rrp12	92	75.000	ENSCANG00000031653	RRP12	99	75.000	Colobus_angolensis_palliatus
ENSSDUG00000022871	rrp12	90	63.279	ENSCGRG00001004338	Rrp12	99	63.433	Cricetulus_griseus_chok1gshd
ENSSDUG00000022871	rrp12	99	62.751	ENSCGRG00000011965	Rrp12	99	62.888	Cricetulus_griseus_crigri
ENSSDUG00000022871	rrp12	99	88.267	ENSCSEG00000007799	rrp12	99	88.507	Cynoglossus_semilaevis
ENSSDUG00000022871	rrp12	99	87.578	ENSCVAG00000003418	rrp12	99	87.656	Cyprinodon_variegatus
ENSSDUG00000022871	rrp12	99	73.333	ENSDARG00000022410	rrp12	99	73.536	Danio_rerio
ENSSDUG00000022871	rrp12	99	62.327	ENSDNOG00000005120	RRP12	99	62.277	Dasypus_novemcinctus
ENSSDUG00000022871	rrp12	99	61.887	ENSDORG00000009199	Rrp12	99	62.693	Dipodomys_ordii
ENSSDUG00000022871	rrp12	93	58.889	ENSETEG00000002455	RRP12	93	58.889	Echinops_telfairi
ENSSDUG00000022871	rrp12	84	60.000	ENSEBUG00000006555	rrp12	99	48.558	Eptatretus_burgeri
ENSSDUG00000022871	rrp12	99	62.231	ENSEASG00005008693	RRP12	99	62.791	Equus_asinus_asinus
ENSSDUG00000022871	rrp12	94	62.111	ENSECAG00000010892	RRP12	99	62.789	Equus_caballus
ENSSDUG00000022871	rrp12	61	61.111	ENSEEUG00000005447	-	64	57.059	Erinaceus_europaeus
ENSSDUG00000022871	rrp12	99	79.086	ENSELUG00000010510	rrp12	100	78.934	Esox_lucius
ENSSDUG00000022871	rrp12	99	62.625	ENSFCAG00000028639	RRP12	99	74.342	Felis_catus
ENSSDUG00000022871	rrp12	94	62.881	ENSFALG00000008458	RRP12	99	63.320	Ficedula_albicollis
ENSSDUG00000022871	rrp12	99	61.604	ENSFDAG00000019108	RRP12	95	61.908	Fukomys_damarensis
ENSSDUG00000022871	rrp12	99	79.719	ENSFHEG00000004148	rrp12	99	79.719	Fundulus_heteroclitus
ENSSDUG00000022871	rrp12	96	81.220	ENSGMOG00000004188	rrp12	95	81.220	Gadus_morhua
ENSSDUG00000022871	rrp12	99	63.418	ENSGALG00000041331	RRP12	96	64.395	Gallus_gallus
ENSSDUG00000022871	rrp12	99	87.344	ENSGAFG00000009038	rrp12	99	87.344	Gambusia_affinis
ENSSDUG00000022871	rrp12	99	86.953	ENSGACG00000007175	rrp12	99	86.953	Gasterosteus_aculeatus
ENSSDUG00000022871	rrp12	69	66.551	ENSGAGG00000019169	RRP12	96	66.979	Gopherus_agassizii
ENSSDUG00000022871	rrp12	99	62.826	ENSGGOG00000014850	RRP12	99	63.109	Gorilla_gorilla
ENSSDUG00000022871	rrp12	99	90.156	ENSHBUG00000023527	rrp12	99	90.156	Haplochromis_burtoni
ENSSDUG00000022871	rrp12	99	61.758	ENSHGLG00000016772	RRP12	99	61.986	Heterocephalus_glaber_female
ENSSDUG00000022871	rrp12	99	61.758	ENSHGLG00100015110	RRP12	99	61.986	Heterocephalus_glaber_male
ENSSDUG00000022871	rrp12	100	83.553	ENSHCOG00000019519	rrp12	99	83.894	Hippocampus_comes
ENSSDUG00000022871	rrp12	100	75.600	ENSIPUG00000000311	RRP12	99	75.838	Ictalurus_punctatus
ENSSDUG00000022871	rrp12	99	62.837	ENSSTOG00000006515	RRP12	99	63.276	Ictidomys_tridecemlineatus
ENSSDUG00000022871	rrp12	96	62.000	ENSJJAG00000000110	Rrp12	98	62.208	Jaculus_jaculus
ENSSDUG00000022871	rrp12	99	88.645	ENSKMAG00000020621	rrp12	99	88.645	Kryptolebias_marmoratus
ENSSDUG00000022871	rrp12	99	85.703	ENSLBEG00000015335	rrp12	99	85.850	Labrus_bergylta
ENSSDUG00000022871	rrp12	72	64.045	ENSLACG00000016633	RRP12	81	64.045	Latimeria_chalumnae
ENSSDUG00000022871	rrp12	100	71.694	ENSLOCG00000003846	rrp12	99	71.707	Lepisosteus_oculatus
ENSSDUG00000022871	rrp12	99	62.318	ENSLAFG00000015965	RRP12	99	62.548	Loxodonta_africana
ENSSDUG00000022871	rrp12	92	74.342	ENSMFAG00000041558	RRP12	99	63.080	Macaca_fascicularis
ENSSDUG00000022871	rrp12	92	74.342	ENSMMUG00000019634	RRP12	99	63.080	Macaca_mulatta
ENSSDUG00000022871	rrp12	92	74.342	ENSMNEG00000036759	RRP12	99	74.342	Macaca_nemestrina
ENSSDUG00000022871	rrp12	92	75.000	ENSMLEG00000041317	RRP12	99	60.134	Mandrillus_leucophaeus
ENSSDUG00000022871	rrp12	99	90.152	ENSMAMG00000002964	rrp12	99	91.840	Mastacembelus_armatus
ENSSDUG00000022871	rrp12	99	90.078	ENSMZEG00005003241	rrp12	99	90.078	Maylandia_zebra
ENSSDUG00000022871	rrp12	99	61.308	ENSMGAG00000009829	RRP12	99	61.705	Meleagris_gallopavo
ENSSDUG00000022871	rrp12	99	60.277	ENSMAUG00000020743	Rrp12	99	60.402	Mesocricetus_auratus
ENSSDUG00000022871	rrp12	99	63.182	ENSMICG00000007624	RRP12	99	63.390	Microcebus_murinus
ENSSDUG00000022871	rrp12	100	62.664	ENSMOCG00000006753	Rrp12	99	62.839	Microtus_ochrogaster
ENSSDUG00000022871	rrp12	100	86.899	ENSMMOG00000010708	rrp12	99	87.188	Mola_mola
ENSSDUG00000022871	rrp12	99	63.235	ENSMODG00000004315	RRP12	99	63.502	Monodelphis_domestica
ENSSDUG00000022871	rrp12	99	85.771	ENSMALG00000016560	rrp12	99	90.000	Monopterus_albus
ENSSDUG00000022871	rrp12	99	62.366	MGP_CAROLIEiJ_G0022957	Rrp12	99	62.519	Mus_caroli
ENSSDUG00000022871	rrp12	99	63.020	ENSMUSG00000035049	Rrp12	99	63.178	Mus_musculus
ENSSDUG00000022871	rrp12	100	63.125	MGP_PahariEiJ_G0014447	Rrp12	99	63.411	Mus_pahari
ENSSDUG00000022871	rrp12	99	63.174	MGP_SPRETEiJ_G0023878	Rrp12	99	63.411	Mus_spretus
ENSSDUG00000022871	rrp12	99	62.077	ENSMPUG00000017046	RRP12	99	62.432	Mustela_putorius_furo
ENSSDUG00000022871	rrp12	99	62.577	ENSMLUG00000017160	RRP12	99	62.983	Myotis_lucifugus
ENSSDUG00000022871	rrp12	99	62.510	ENSNGAG00000024144	Rrp12	99	62.713	Nannospalax_galili
ENSSDUG00000022871	rrp12	99	88.385	ENSNBRG00000009987	rrp12	99	88.385	Neolamprologus_brichardi
ENSSDUG00000022871	rrp12	99	55.263	ENSNLEG00000013762	RRP12	99	55.651	Nomascus_leucogenys
ENSSDUG00000022871	rrp12	100	58.372	ENSMEUG00000003185	RRP12	99	58.911	Notamacropus_eugenii
ENSSDUG00000022871	rrp12	94	65.890	ENSOPRG00000005001	RRP12	93	65.890	Ochotona_princeps
ENSSDUG00000022871	rrp12	100	61.449	ENSODEG00000016439	RRP12	99	61.774	Octodon_degus
ENSSDUG00000022871	rrp12	99	90.547	ENSONIG00000009528	rrp12	99	90.547	Oreochromis_niloticus
ENSSDUG00000022871	rrp12	100	59.325	ENSOANG00000006560	RRP12	99	59.397	Ornithorhynchus_anatinus
ENSSDUG00000022871	rrp12	99	62.250	ENSOCUG00000005662	RRP12	99	62.888	Oryctolagus_cuniculus
ENSSDUG00000022871	rrp12	99	86.562	ENSORLG00000008688	rrp12	99	86.610	Oryzias_latipes
ENSSDUG00000022871	rrp12	97	86.714	ENSORLG00020002355	rrp12	99	86.714	Oryzias_latipes_hni
ENSSDUG00000022871	rrp12	99	86.797	ENSORLG00015006709	rrp12	99	86.797	Oryzias_latipes_hsok
ENSSDUG00000022871	rrp12	97	87.192	ENSOMEG00000002609	rrp12	99	87.192	Oryzias_melastigma
ENSSDUG00000022871	rrp12	99	61.934	ENSOGAG00000001626	RRP12	99	62.298	Otolemur_garnettii
ENSSDUG00000022871	rrp12	99	61.580	ENSOARG00000009681	RRP12	99	61.824	Ovis_aries
ENSSDUG00000022871	rrp12	99	60.953	ENSPPAG00000043885	RRP12	99	61.098	Pan_paniscus
ENSSDUG00000022871	rrp12	99	62.471	ENSPPRG00000002029	RRP12	99	73.684	Panthera_pardus
ENSSDUG00000022871	rrp12	99	59.601	ENSPTIG00000004428	RRP12	99	74.342	Panthera_tigris_altaica
ENSSDUG00000022871	rrp12	99	61.030	ENSPTRG00000002806	RRP12	99	74.342	Pan_troglodytes
ENSSDUG00000022871	rrp12	92	75.000	ENSPANG00000021360	RRP12	99	75.000	Papio_anubis
ENSSDUG00000022871	rrp12	100	74.576	ENSPKIG00000016516	rrp12	99	74.942	Paramormyrops_kingsleyae
ENSSDUG00000022871	rrp12	99	83.841	ENSPMGG00000020217	rrp12	99	84.165	Periophthalmus_magnuspinnatus
ENSSDUG00000022871	rrp12	100	63.231	ENSPEMG00000008437	Rrp12	99	63.488	Peromyscus_maniculatus_bairdii
ENSSDUG00000022871	rrp12	89	52.013	ENSPMAG00000007493	rrp12	99	47.001	Petromyzon_marinus
ENSSDUG00000022871	rrp12	96	72.483	ENSPCIG00000002157	RRP12	99	63.941	Phascolarctos_cinereus
ENSSDUG00000022871	rrp12	99	87.354	ENSPFOG00000014975	rrp12	99	87.354	Poecilia_formosa
ENSSDUG00000022871	rrp12	99	87.198	ENSPLAG00000009840	rrp12	99	87.198	Poecilia_latipinna
ENSSDUG00000022871	rrp12	99	87.354	ENSPMEG00000021871	rrp12	99	87.354	Poecilia_mexicana
ENSSDUG00000022871	rrp12	99	83.694	ENSPREG00000020950	rrp12	99	83.694	Poecilia_reticulata
ENSSDUG00000022871	rrp12	99	62.212	ENSPPYG00000002528	RRP12	99	62.490	Pongo_abelii
ENSSDUG00000022871	rrp12	94	75.706	ENSPCAG00000008967	RRP12	94	75.706	Procavia_capensis
ENSSDUG00000022871	rrp12	99	63.272	ENSPCOG00000014009	RRP12	99	63.792	Propithecus_coquereli
ENSSDUG00000022871	rrp12	99	59.923	ENSPVAG00000003370	RRP12	99	60.108	Pteropus_vampyrus
ENSSDUG00000022871	rrp12	99	90.469	ENSPNYG00000009451	rrp12	99	90.469	Pundamilia_nyererei
ENSSDUG00000022871	rrp12	100	75.814	ENSPNAG00000007658	rrp12	99	75.781	Pygocentrus_nattereri
ENSSDUG00000022871	rrp12	99	63.097	ENSRNOG00000048495	Rrp12	99	63.382	Rattus_norvegicus
ENSSDUG00000022871	rrp12	92	75.000	ENSRBIG00000021296	RRP12	99	75.000	Rhinopithecus_bieti
ENSSDUG00000022871	rrp12	92	75.000	ENSRROG00000032482	RRP12	99	75.000	Rhinopithecus_roxellana
ENSSDUG00000022871	rrp12	92	73.684	ENSSBOG00000030992	RRP12	99	73.684	Saimiri_boliviensis_boliviensis
ENSSDUG00000022871	rrp12	99	63.264	ENSSHAG00000018275	RRP12	99	63.346	Sarcophilus_harrisii
ENSSDUG00000022871	rrp12	99	76.475	ENSSFOG00015016400	rrp12	99	76.797	Scleropages_formosus
ENSSDUG00000022871	rrp12	99	92.091	ENSSMAG00000004047	rrp12	99	92.091	Scophthalmus_maximus
ENSSDUG00000022871	rrp12	100	99.456	ENSSLDG00000003038	rrp12	100	99.456	Seriola_lalandi_dorsalis
ENSSDUG00000022871	rrp12	100	61.806	ENSSPUG00000012221	RRP12	99	62.286	Sphenodon_punctatus
ENSSDUG00000022871	rrp12	99	91.875	ENSSPAG00000002261	rrp12	99	91.875	Stegastes_partitus
ENSSDUG00000022871	rrp12	100	61.740	ENSSSCG00000010514	RRP12	99	62.141	Sus_scrofa
ENSSDUG00000022871	rrp12	89	60.087	ENSTGUG00000009711	RRP12	99	60.510	Taeniopygia_guttata
ENSSDUG00000022871	rrp12	100	81.430	ENSTRUG00000012017	rrp12	99	81.441	Takifugu_rubripes
ENSSDUG00000022871	rrp12	100	86.169	ENSTNIG00000016522	rrp12	99	86.374	Tetraodon_nigroviridis
ENSSDUG00000022871	rrp12	77	73.267	ENSTBEG00000004907	RRP12	79	73.267	Tupaia_belangeri
ENSSDUG00000022871	rrp12	100	60.046	ENSTTRG00000009878	RRP12	99	60.404	Tursiops_truncatus
ENSSDUG00000022871	rrp12	99	62.625	ENSUAMG00000009092	RRP12	99	62.983	Ursus_americanus
ENSSDUG00000022871	rrp12	99	61.004	ENSUMAG00000021621	RRP12	99	61.353	Ursus_maritimus
ENSSDUG00000022871	rrp12	99	62.384	ENSVVUG00000023168	RRP12	99	62.616	Vulpes_vulpes
ENSSDUG00000022871	rrp12	99	65.456	ENSXETG00000003430	rrp12	99	65.630	Xenopus_tropicalis
ENSSDUG00000022871	rrp12	98	83.117	ENSXCOG00000012082	rrp12	97	86.325	Xiphophorus_couchianus
ENSSDUG00000022871	rrp12	99	87.344	ENSXMAG00000013498	rrp12	99	87.266	Xiphophorus_maculatus