EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000023008 (Gene tree)
Gene ID
111217644
Gene Symbol
rab5c
Alias
wu:fb98b08|wu:fi16g01
Full Name
RAB5C%2C member RAS oncogene family
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Minus strand
Length
12199 bases
Position
chrBDQW01000044.1:5797827-5810025
Accession
111217644
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000032034MMR_HSR1PF01926.230.0001311
ENSSDUP00000032035MMR_HSR1PF01926.230.0001311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000032584-3216XM_022739604ENSSDUP00000032034220 (aa)XP_022595325UPI000BBE85A8
ENSSDUT00000032585-3157XM_022739603ENSSDUP00000032035220 (aa)XP_022595324UPI000BBE85A8
Gene Model
Click here to download ENSSDUG00000023008's gene model file
Pathways
Pathway IDPathway NameSource
sdu04144EndocytosisKEGG
sdu04145PhagosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000023008's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000023008rab5c5033.036ENSSDUG00000014258RAP2B8934.400
ENSSDUG00000023008rab5c7335.976ENSSDUG00000019738si:dkey-13a21.48036.196
ENSSDUG00000023008rab5c7532.121ENSSDUG00000016858-8932.121
ENSSDUG00000023008rab5c8942.079ENSSDUG00000002580rab11a9342.079
ENSSDUG00000023008rab5c8944.898ENSSDUG00000016888rab1ab9739.556
ENSSDUG00000023008rab5c8641.799ENSSDUG00000013050-8741.799
ENSSDUG00000023008rab5c7539.766ENSSDUG00000008151zgc:1015597339.766
ENSSDUG00000023008rab5c7639.881ENSSDUG00000005719si:dkey-16l2.169635.821
ENSSDUG00000023008rab5c9340.196ENSSDUG00000021882rab6ba9840.196
ENSSDUG00000023008rab5c7238.365ENSSDUG00000004633RAB157538.365
ENSSDUG00000023008rab5c8041.143ENSSDUG00000006307-8741.143
ENSSDUG00000023008rab5c5431.148ENSSDUG00000000578arl8a6131.148
ENSSDUG00000023008rab5c8049.438ENSSDUG00000006618RAB177449.438
ENSSDUG00000023008rab5c8043.750ENSSDUG00000004445zgc:1719278243.750
ENSSDUG00000023008rab5c8950.000ENSSDUG00000017131rab22a9850.000
ENSSDUG00000023008rab5c5530.645ENSSDUG00000021055arl8ba5330.645
ENSSDUG00000023008rab5c7643.452ENSSDUG00000003823rab18a9640.887
ENSSDUG00000023008rab5c7935.359ENSSDUG00000007575rab9b8735.359
ENSSDUG00000023008rab5c7334.337ENSSDUG00000005037-7734.337
ENSSDUG00000023008rab5c7634.286ENSSDUG00000003386rab9a8534.286
ENSSDUG00000023008rab5c8940.594ENSSDUG00000013325rab309540.594
ENSSDUG00000023008rab5c7149.045ENSSDUG00000009735rab25a7549.045
ENSSDUG00000023008rab5c5431.967ENSSDUG00000012529arl8bb6231.967
ENSSDUG00000023008rab5c8141.573ENSSDUG00000013724rab2a7942.857
ENSSDUG00000023008rab5c7447.853ENSSDUG00000013558rab11bb7547.853
ENSSDUG00000023008rab5c8937.436ENSSDUG00000004950rab35b9637.436
ENSSDUG00000023008rab5c8136.500ENSSDUG00000001791rab33ba8336.500
ENSSDUG00000023008rab5c9142.995ENSSDUG00000005960rab18b9542.995
ENSSDUG00000023008rab5c8945.408ENSSDUG00000022535RAB1A9645.408
ENSSDUG00000023008rab5c8840.816ENSSDUG00000009251rab6bb9440.816
ENSSDUG00000023008rab5c7843.182ENSSDUG00000008011-8543.182
ENSSDUG00000023008rab5c7533.133ENSSDUG00000017779kras9032.164
ENSSDUG00000023008rab5c7637.791ENSSDUG00000008505rab127137.791
ENSSDUG00000023008rab5c6632.877ENSSDUG00000014082si:cabz01085950.17232.877
ENSSDUG00000023008rab5c7336.585ENSSDUG00000014765rabl27036.585
ENSSDUG00000023008rab5c7033.117ENSSDUG00000009122rheb8333.117
ENSSDUG00000023008rab5c7644.910ENSSDUG00000013496-8044.910
ENSSDUG00000023008rab5c7348.447ENSSDUG00000002934-7448.447
ENSSDUG00000023008rab5c7149.045ENSSDUG00000006278rab11al7349.045
ENSSDUG00000023008rab5c7943.103ENSSDUG00000018970RAB6B8243.103
ENSSDUG00000023008rab5c7430.061ENSSDUG00000007311rhebl18830.061
ENSSDUG00000023008rab5c7630.178ENSSDUG00000023163rras28330.178
ENSSDUG00000023008rab5c7131.250ENSSDUG00000010942rab34a6031.250
ENSSDUG00000023008rab5c8538.021ENSSDUG00000013968rab33a8038.021
ENSSDUG00000023008rab5c7234.177ENSSDUG00000023508rab237436.184
ENSSDUG00000023008rab5c5033.036ENSSDUG00000017824-8734.400
ENSSDUG00000023008rab5c8943.077ENSSDUG00000004698rab1ba9643.077
ENSSDUG00000023008rab5c8931.841ENSSDUG00000006543RAB299731.841
ENSSDUG00000023008rab5c7348.447ENSSDUG00000002965rab11ba7547.826
ENSSDUG00000023008rab5c7437.195ENSSDUG00000011851rab42a7537.195
ENSSDUG00000023008rab5c9040.909ENSSDUG00000004551rab149240.909
ENSSDUG00000023008rab5c8931.050ENSSDUG00000019885-9031.050
ENSSDUG00000023008rab5c7339.752ENSSDUG00000005627rab157639.752
ENSSDUG00000023008rab5c9883.796ENSSDUG00000009835rab5aa9983.796
ENSSDUG00000023008rab5c6948.684ENSSDUG00000006260rab25b7848.684
ENSSDUG00000023008rab5c7437.195ENSSDUG00000014091-7737.195
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000023008rab5c9891.204ENSG00000108774RAB5C10095.968Homo_sapiens
ENSSDUG00000023008rab5c10096.364ENSAPOG00000016864rab5c10096.364Acanthochromis_polyacanthus
ENSSDUG00000023008rab5c9891.204ENSAMEG00000006003RAB5C9991.204Ailuropoda_melanoleuca
ENSSDUG00000023008rab5c10096.818ENSACIG00000010896rab5c10096.818Amphilophus_citrinellus
ENSSDUG00000023008rab5c10096.364ENSAOCG00000016614rab5c10096.364Amphiprion_ocellaris
ENSSDUG00000023008rab5c9896.279ENSAPEG00000017868-9996.279Amphiprion_percula
ENSSDUG00000023008rab5c9997.235ENSATEG00000001937rab5c9997.235Anabas_testudineus
ENSSDUG00000023008rab5c9393.171ENSANAG00000025390RAB5C10093.171Aotus_nancymaae
ENSSDUG00000023008rab5c10095.455ENSACLG00000002706rab5c10095.455Astatotilapia_calliptera
ENSSDUG00000023008rab5c9689.623ENSACLG00000008615-10088.288Astatotilapia_calliptera
ENSSDUG00000023008rab5c10097.285ENSAMXG00000043717rab5c10097.285Astyanax_mexicanus
ENSSDUG00000023008rab5c9592.308ENSAMXG00000037267-9992.308Astyanax_mexicanus
ENSSDUG00000023008rab5c9891.204ENSBTAG00000006982RAB5C9991.204Bos_taurus
ENSSDUG00000023008rab5c9874.654WBGene00004268rab-59974.654Caenorhabditis_elegans
ENSSDUG00000023008rab5c9891.204ENSCAFG00000015629RAB5C9991.204Canis_familiaris
ENSSDUG00000023008rab5c9891.204ENSCAFG00020013537RAB5C9991.204Canis_lupus_dingo
ENSSDUG00000023008rab5c9891.204ENSCHIG00000012960RAB5C9991.204Capra_hircus
ENSSDUG00000023008rab5c9891.667ENSTSYG00000030531RAB5C9991.667Carlito_syrichta
ENSSDUG00000023008rab5c9891.204ENSCCAG00000025940RAB5C9991.204Cebus_capucinus
ENSSDUG00000023008rab5c9891.204ENSCATG00000040873RAB5C9991.204Cercocebus_atys
ENSSDUG00000023008rab5c9891.204ENSCLAG00000016650RAB5C9991.204Chinchilla_lanigera
ENSSDUG00000023008rab5c8195.506ENSCHOG00000009886RAB5C10095.506Choloepus_hoffmanni
ENSSDUG00000023008rab5c10075.455ENSCING00000003340-10075.455Ciona_intestinalis
ENSSDUG00000023008rab5c9976.889ENSCSAVG00000000613-9984.568Ciona_savignyi
ENSSDUG00000023008rab5c9891.204ENSCGRG00001014226Rab5c9991.204Cricetulus_griseus_chok1gshd
ENSSDUG00000023008rab5c9891.204ENSCGRG00000007534Rab5c9991.204Cricetulus_griseus_crigri
ENSSDUG00000023008rab5c10095.000ENSCSEG00000017024rab5c10095.000Cynoglossus_semilaevis
ENSSDUG00000023008rab5c10096.364ENSCVAG00000009550rab5c10096.364Cyprinodon_variegatus
ENSSDUG00000023008rab5c9891.204ENSDNOG00000038853RAB5C9991.204Dasypus_novemcinctus
ENSSDUG00000023008rab5c9892.130ENSDORG00000006819Rab5c9992.130Dipodomys_ordii
ENSSDUG00000023008rab5c9873.023FBgn0014010Rab59573.023Drosophila_melanogaster
ENSSDUG00000023008rab5c9877.778ENSEBUG00000014794rab5c9977.778Eptatretus_burgeri
ENSSDUG00000023008rab5c9891.204ENSEASG00005009281RAB5C9991.204Equus_asinus_asinus
ENSSDUG00000023008rab5c9891.667ENSECAG00000025054RAB5C9991.667Equus_caballus
ENSSDUG00000023008rab5c9891.204ENSEEUG00000002790RAB5C9991.204Erinaceus_europaeus
ENSSDUG00000023008rab5c9894.907ENSELUG00000018516rab5c9994.907Esox_lucius
ENSSDUG00000023008rab5c10090.455ENSELUG00000010439-10090.455Esox_lucius
ENSSDUG00000023008rab5c9891.204ENSFCAG00000002148RAB5C9991.204Felis_catus
ENSSDUG00000023008rab5c9890.741ENSFDAG00000021541RAB5C9990.741Fukomys_damarensis
ENSSDUG00000023008rab5c9990.411ENSFHEG00000015268-9990.411Fundulus_heteroclitus
ENSSDUG00000023008rab5c10097.727ENSFHEG00000012117rab5c10097.727Fundulus_heteroclitus
ENSSDUG00000023008rab5c7688.690ENSGMOG00000001876-9788.690Gadus_morhua
ENSSDUG00000023008rab5c10095.000ENSGMOG00000015096rab5c10095.000Gadus_morhua
ENSSDUG00000023008rab5c10097.727ENSGAFG00000000884rab5c10097.727Gambusia_affinis
ENSSDUG00000023008rab5c9590.909ENSGAFG00000003642-9988.739Gambusia_affinis
ENSSDUG00000023008rab5c10092.727ENSGACG00000008659rab5c10092.727Gasterosteus_aculeatus
ENSSDUG00000023008rab5c9891.204ENSGGOG00000005472RAB5C9991.204Gorilla_gorilla
ENSSDUG00000023008rab5c9689.623ENSHBUG00000006823-10088.288Haplochromis_burtoni
ENSSDUG00000023008rab5c10095.455ENSHBUG00000002014rab5c10095.455Haplochromis_burtoni
ENSSDUG00000023008rab5c9890.741ENSHGLG00000012067RAB5C9990.741Heterocephalus_glaber_female
ENSSDUG00000023008rab5c9996.804ENSHCOG00000004662rab5c9896.804Hippocampus_comes
ENSSDUG00000023008rab5c9582.857ENSHCOG00000020238-10080.702Hippocampus_comes
ENSSDUG00000023008rab5c9593.780ENSIPUG00000020082rab5c10094.144Ictalurus_punctatus
ENSSDUG00000023008rab5c9890.741ENSSTOG00000006620RAB5C9990.741Ictidomys_tridecemlineatus
ENSSDUG00000023008rab5c9891.667ENSJJAG00000021181Rab5c9991.667Jaculus_jaculus
ENSSDUG00000023008rab5c9989.954ENSKMAG00000017417-9989.954Kryptolebias_marmoratus
ENSSDUG00000023008rab5c10096.818ENSKMAG00000020038rab5c10096.818Kryptolebias_marmoratus
ENSSDUG00000023008rab5c10090.045ENSLBEG00000010408-10090.045Labrus_bergylta
ENSSDUG00000023008rab5c10098.182ENSLBEG00000004128rab5c10098.182Labrus_bergylta
ENSSDUG00000023008rab5c9893.981ENSLOCG00000012566rab5c10093.981Lepisosteus_oculatus
ENSSDUG00000023008rab5c9891.204ENSMFAG00000039627RAB5C9991.204Macaca_fascicularis
ENSSDUG00000023008rab5c9891.204ENSMNEG00000000355RAB5C9991.204Macaca_nemestrina
ENSSDUG00000023008rab5c10096.818ENSMAMG00000022322rab5c10096.818Mastacembelus_armatus
ENSSDUG00000023008rab5c9990.868ENSMAMG00000016207-9990.868Mastacembelus_armatus
ENSSDUG00000023008rab5c9689.623ENSMZEG00005021090-10088.288Maylandia_zebra
ENSSDUG00000023008rab5c10095.455ENSMZEG00005022735rab5c10095.455Maylandia_zebra
ENSSDUG00000023008rab5c9891.667ENSMAUG00000015005Rab5c9991.667Mesocricetus_auratus
ENSSDUG00000023008rab5c9891.667ENSMICG00000041608RAB5C9991.667Microcebus_murinus
ENSSDUG00000023008rab5c9891.667ENSMOCG00000018531-9991.667Microtus_ochrogaster
ENSSDUG00000023008rab5c10096.364ENSMMOG00000020621rab5c10096.364Mola_mola
ENSSDUG00000023008rab5c9889.767ENSMALG00000006052rab5c9789.954Monopterus_albus
ENSSDUG00000023008rab5c9989.041ENSMALG00000022348-9989.041Monopterus_albus
ENSSDUG00000023008rab5c9891.667MGP_CAROLIEiJ_G0017184Rab5c9991.667Mus_caroli
ENSSDUG00000023008rab5c9891.667ENSMUSG00000019173Rab5c9991.667Mus_musculus
ENSSDUG00000023008rab5c9891.667MGP_PahariEiJ_G0018314Rab5c9991.667Mus_pahari
ENSSDUG00000023008rab5c9891.667MGP_SPRETEiJ_G0018027Rab5c9991.667Mus_spretus
ENSSDUG00000023008rab5c9891.204ENSMPUG00000010554RAB5C9991.204Mustela_putorius_furo
ENSSDUG00000023008rab5c9891.204ENSNGAG00000010286Rab5c9991.204Nannospalax_galili
ENSSDUG00000023008rab5c10096.364ENSNBRG00000018165rab5c10096.364Neolamprologus_brichardi
ENSSDUG00000023008rab5c9689.623ENSNBRG00000016922-10088.288Neolamprologus_brichardi
ENSSDUG00000023008rab5c8188.764ENSOPRG00000008255RAB5C10088.764Ochotona_princeps
ENSSDUG00000023008rab5c9890.741ENSODEG00000017920RAB5C9990.741Octodon_degus
ENSSDUG00000023008rab5c10096.364ENSONIG00000001113rab5c10096.364Oreochromis_niloticus
ENSSDUG00000023008rab5c9995.853ENSORLG00000003882rab5c9995.853Oryzias_latipes
ENSSDUG00000023008rab5c9996.313ENSORLG00020008388rab5c9996.313Oryzias_latipes_hni
ENSSDUG00000023008rab5c9995.853ENSORLG00015021900rab5c9995.853Oryzias_latipes_hsok
ENSSDUG00000023008rab5c9995.853ENSOMEG00000023078rab5c9995.853Oryzias_melastigma
ENSSDUG00000023008rab5c9891.667ENSOGAG00000009456RAB5C9991.667Otolemur_garnettii
ENSSDUG00000023008rab5c9891.204ENSOARG00000018768RAB5C9991.204Ovis_aries
ENSSDUG00000023008rab5c9891.204ENSPPAG00000037206RAB5C9991.204Pan_paniscus
ENSSDUG00000023008rab5c9891.204ENSPPRG00000005745RAB5C9991.204Panthera_pardus
ENSSDUG00000023008rab5c9891.204ENSPTIG00000008177RAB5C9991.204Panthera_tigris_altaica
ENSSDUG00000023008rab5c9891.204ENSPTRG00000009194RAB5C9991.204Pan_troglodytes
ENSSDUG00000023008rab5c9888.889ENSPKIG00000001237-9988.889Paramormyrops_kingsleyae
ENSSDUG00000023008rab5c9888.426ENSPKIG00000020112-9988.426Paramormyrops_kingsleyae
ENSSDUG00000023008rab5c10092.727ENSPMGG00000010792rab5c9994.419Periophthalmus_magnuspinnatus
ENSSDUG00000023008rab5c9891.667ENSPEMG00000017971Rab5c9991.667Peromyscus_maniculatus_bairdii
ENSSDUG00000023008rab5c8782.292ENSPMAG00000007867rab5c9182.292Petromyzon_marinus
ENSSDUG00000023008rab5c9977.419ENSPMAG00000001399rab5c10077.419Petromyzon_marinus
ENSSDUG00000023008rab5c9878.733ENSPMAG00000000008rab5c9978.733Petromyzon_marinus
ENSSDUG00000023008rab5c9891.204ENSPCIG00000020225-9991.204Phascolarctos_cinereus
ENSSDUG00000023008rab5c9989.954ENSPLAG00000016333-10089.954Poecilia_latipinna
ENSSDUG00000023008rab5c10097.727ENSPLAG00000004790rab5c10097.727Poecilia_latipinna
ENSSDUG00000023008rab5c9691.080ENSPMEG00000012614-10089.686Poecilia_mexicana
ENSSDUG00000023008rab5c10097.727ENSPMEG00000011336rab5c10097.727Poecilia_mexicana
ENSSDUG00000023008rab5c8592.063ENSPREG00000022167-8993.443Poecilia_reticulata
ENSSDUG00000023008rab5c10097.727ENSPREG00000010146rab5c10097.727Poecilia_reticulata
ENSSDUG00000023008rab5c9891.204ENSPPYG00000008398RAB5C9991.204Pongo_abelii
ENSSDUG00000023008rab5c9890.278ENSPCAG00000016412RAB5C9990.278Procavia_capensis
ENSSDUG00000023008rab5c9891.204ENSPCOG00000026327RAB5C9991.204Propithecus_coquereli
ENSSDUG00000023008rab5c9891.667ENSPVAG00000003867RAB5C9991.667Pteropus_vampyrus
ENSSDUG00000023008rab5c9689.623ENSPNYG00000015851-10088.288Pundamilia_nyererei
ENSSDUG00000023008rab5c10095.455ENSPNYG00000010615rab5c10095.455Pundamilia_nyererei
ENSSDUG00000023008rab5c10096.380ENSPNAG00000028138rab5c10096.380Pygocentrus_nattereri
ENSSDUG00000023008rab5c9589.952ENSPNAG00000002218-9889.952Pygocentrus_nattereri
ENSSDUG00000023008rab5c9891.667ENSRNOG00000018568Rab5c9991.667Rattus_norvegicus
ENSSDUG00000023008rab5c9891.204ENSRBIG00000031376RAB5C9991.204Rhinopithecus_bieti
ENSSDUG00000023008rab5c9891.204ENSRROG00000032895RAB5C9991.204Rhinopithecus_roxellana
ENSSDUG00000023008rab5c9891.204ENSSBOG00000032552-9991.204Saimiri_boliviensis_boliviensis
ENSSDUG00000023008rab5c9891.667ENSSHAG00000005267-9991.667Sarcophilus_harrisii
ENSSDUG00000023008rab5c10087.273ENSSFOG00015009988-10087.273Scleropages_formosus
ENSSDUG00000023008rab5c9597.129ENSSMAG00000007323rab5c10096.364Scophthalmus_maximus
ENSSDUG00000023008rab5c10099.091ENSSLDG00000017771rab5c10099.091Seriola_lalandi_dorsalis
ENSSDUG00000023008rab5c9893.056ENSSPUG00000012950-9993.056Sphenodon_punctatus
ENSSDUG00000023008rab5c10097.727ENSSPAG00000006436rab5c10097.727Stegastes_partitus
ENSSDUG00000023008rab5c9891.204ENSSSCG00000032467RAB5C9991.204Sus_scrofa
ENSSDUG00000023008rab5c10095.000ENSTRUG00000015590rab5c10095.000Takifugu_rubripes
ENSSDUG00000023008rab5c9696.682ENSTNIG00000011711rab5c9596.682Tetraodon_nigroviridis
ENSSDUG00000023008rab5c9891.204ENSTBEG00000007092RAB5C9991.204Tupaia_belangeri
ENSSDUG00000023008rab5c9890.741ENSTTRG00000006673RAB5C9990.741Tursiops_truncatus
ENSSDUG00000023008rab5c9891.204ENSUAMG00000024343RAB5C9991.204Ursus_americanus
ENSSDUG00000023008rab5c9891.204ENSUMAG00000023270RAB5C9991.204Ursus_maritimus
ENSSDUG00000023008rab5c9591.388ENSXCOG00000006300-9989.189Xiphophorus_couchianus
ENSSDUG00000023008rab5c10097.727ENSXCOG00000016788rab5c10097.727Xiphophorus_couchianus
ENSSDUG00000023008rab5c9989.498ENSXMAG00000022179-10089.498Xiphophorus_maculatus
ENSSDUG00000023008rab5c10097.727ENSXMAG00000003266rab5c10097.727Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us