EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000023480 (Gene tree)
Gene ID: 111217837
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 18006 bases
Position: chrBDQW01000047.1:492471-510476
Accession: 111217837
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000032683	ResIII	PF04851.15	3.1e-07	1	1
ENSSDUP00000032677	ResIII	PF04851.15	3.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000033238	-	7489	XM_022739822	ENSSDUP00000032677	1405 (aa)	XP_022595543	UPI000BBF2CF0
ENSSDUT00000033244	-	4041	-	ENSSDUP00000032683	1346 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000023480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000023480's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000023480	sbno1	71	63.765	ENSSDUG00000003527	si:ch73-63e15.2	62	63.719

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000023480	sbno1	99	75.403	ENSG00000139697	SBNO1	99	75.403	Homo_sapiens
ENSSDUG00000023480	sbno1	86	95.361	ENSAPOG00000003196	sbno1	99	95.361	Acanthochromis_polyacanthus
ENSSDUG00000023480	sbno1	99	75.734	ENSAMEG00000015151	SBNO1	99	75.594	Ailuropoda_melanoleuca
ENSSDUG00000023480	sbno1	100	88.489	ENSACIG00000008088	sbno1	99	88.701	Amphilophus_citrinellus
ENSSDUG00000023480	sbno1	100	93.665	ENSAOCG00000014859	sbno1	99	94.093	Amphiprion_ocellaris
ENSSDUG00000023480	sbno1	100	93.594	ENSAPEG00000006069	sbno1	99	94.021	Amphiprion_percula
ENSSDUG00000023480	sbno1	100	95.160	ENSATEG00000006667	sbno1	100	95.160	Anabas_testudineus
ENSSDUG00000023480	sbno1	98	76.126	ENSAPLG00000015674	SBNO1	99	76.375	Anas_platyrhynchos
ENSSDUG00000023480	sbno1	98	74.982	ENSACAG00000015441	SBNO1	88	74.526	Anolis_carolinensis
ENSSDUG00000023480	sbno1	95	84.574	ENSANAG00000029958	-	99	84.268	Aotus_nancymaae
ENSSDUG00000023480	sbno1	100	87.402	ENSACLG00000024913	sbno1	100	87.189	Astatotilapia_calliptera
ENSSDUG00000023480	sbno1	100	82.707	ENSAMXG00000019473	sbno1	100	82.920	Astyanax_mexicanus
ENSSDUG00000023480	sbno1	100	75.840	ENSBTAG00000020505	SBNO1	99	75.840	Bos_taurus
ENSSDUG00000023480	sbno1	99	75.403	ENSCJAG00000016599	SBNO1	99	75.333	Callithrix_jacchus
ENSSDUG00000023480	sbno1	99	75.717	ENSCAFG00000007503	SBNO1	99	77.639	Canis_familiaris
ENSSDUG00000023480	sbno1	95	82.491	ENSCAFG00020015363	SBNO1	99	82.491	Canis_lupus_dingo
ENSSDUG00000023480	sbno1	95	84.657	ENSCHIG00000008382	SBNO1	99	84.657	Capra_hircus
ENSSDUG00000023480	sbno1	99	75.543	ENSTSYG00000012749	SBNO1	99	78.080	Carlito_syrichta
ENSSDUG00000023480	sbno1	90	84.810	ENSCAPG00000000384	SBNO1	99	84.810	Cavia_aperea
ENSSDUG00000023480	sbno1	95	84.810	ENSCPOG00000008109	SBNO1	99	84.810	Cavia_porcellus
ENSSDUG00000023480	sbno1	99	71.268	ENSCCAG00000035316	SBNO1	99	73.285	Cebus_capucinus
ENSSDUG00000023480	sbno1	91	84.201	ENSCATG00000008239	SBNO1	99	84.201	Cercocebus_atys
ENSSDUG00000023480	sbno1	95	84.810	ENSCLAG00000008995	SBNO1	99	84.810	Chinchilla_lanigera
ENSSDUG00000023480	sbno1	85	81.677	ENSCSAG00000002064	SBNO1	99	81.640	Chlorocebus_sabaeus
ENSSDUG00000023480	sbno1	97	75.540	ENSCHOG00000008814	SBNO1	99	69.684	Choloepus_hoffmanni
ENSSDUG00000023480	sbno1	98	75.447	ENSCPBG00000025968	SBNO1	99	75.424	Chrysemys_picta_bellii
ENSSDUG00000023480	sbno1	99	72.039	ENSCANG00000042688	-	99	71.899	Colobus_angolensis_palliatus
ENSSDUG00000023480	sbno1	95	83.243	ENSCGRG00001017470	Sbno1	99	83.243	Cricetulus_griseus_chok1gshd
ENSSDUG00000023480	sbno1	95	83.243	ENSCGRG00000004756	Sbno1	99	83.243	Cricetulus_griseus_crigri
ENSSDUG00000023480	sbno1	100	92.740	ENSCSEG00000011919	sbno1	100	92.740	Cynoglossus_semilaevis
ENSSDUG00000023480	sbno1	100	91.684	ENSCVAG00000007038	sbno1	100	91.756	Cyprinodon_variegatus
ENSSDUG00000023480	sbno1	100	82.695	ENSDARG00000099080	sbno1	100	83.475	Danio_rerio
ENSSDUG00000023480	sbno1	99	78.476	ENSDNOG00000017147	SBNO1	96	78.476	Dasypus_novemcinctus
ENSSDUG00000023480	sbno1	99	72.529	ENSDORG00000015261	Sbno1	99	72.456	Dipodomys_ordii
ENSSDUG00000023480	sbno1	93	72.642	ENSETEG00000005620	SBNO1	93	72.642	Echinops_telfairi
ENSSDUG00000023480	sbno1	75	61.347	ENSEBUG00000013823	sbno1	93	60.907	Eptatretus_burgeri
ENSSDUG00000023480	sbno1	51	72.337	ENSEASG00005012595	-	92	72.891	Equus_asinus_asinus
ENSSDUG00000023480	sbno1	99	75.753	ENSECAG00000006127	SBNO1	99	76.211	Equus_caballus
ENSSDUG00000023480	sbno1	81	78.142	ENSEEUG00000003793	SBNO1	82	78.142	Erinaceus_europaeus
ENSSDUG00000023480	sbno1	97	88.338	ENSELUG00000002886	sbno1	99	84.300	Esox_lucius
ENSSDUG00000023480	sbno1	99	75.823	ENSFCAG00000015331	SBNO1	99	75.683	Felis_catus
ENSSDUG00000023480	sbno1	98	75.983	ENSFALG00000009273	SBNO1	99	76.234	Ficedula_albicollis
ENSSDUG00000023480	sbno1	95	82.065	ENSFDAG00000014232	SBNO1	99	82.065	Fukomys_damarensis
ENSSDUG00000023480	sbno1	100	91.045	ENSFHEG00000007360	sbno1	100	91.258	Fundulus_heteroclitus
ENSSDUG00000023480	sbno1	94	86.692	ENSGMOG00000018229	sbno1	99	86.541	Gadus_morhua
ENSSDUG00000023480	sbno1	88	75.753	ENSGALG00000003392	SBNO1	99	76.255	Gallus_gallus
ENSSDUG00000023480	sbno1	100	91.684	ENSGAFG00000003960	sbno1	100	91.613	Gambusia_affinis
ENSSDUG00000023480	sbno1	94	91.141	ENSGACG00000015633	sbno1	99	91.141	Gasterosteus_aculeatus
ENSSDUG00000023480	sbno1	95	86.667	ENSGAGG00000001065	SBNO1	99	85.481	Gopherus_agassizii
ENSSDUG00000023480	sbno1	95	84.629	ENSGGOG00000015000	SBNO1	99	84.629	Gorilla_gorilla
ENSSDUG00000023480	sbno1	100	81.135	ENSHBUG00000011910	sbno1	100	80.702	Haplochromis_burtoni
ENSSDUG00000023480	sbno1	95	85.118	ENSHGLG00000014165	-	99	84.810	Heterocephalus_glaber_female
ENSSDUG00000023480	sbno1	91	93.861	ENSHCOG00000003246	sbno1	95	93.861	Hippocampus_comes
ENSSDUG00000023480	sbno1	100	83.156	ENSIPUG00000015830	Sbno1	98	83.779	Ictalurus_punctatus
ENSSDUG00000023480	sbno1	95	84.657	ENSSTOG00000023221	SBNO1	99	84.657	Ictidomys_tridecemlineatus
ENSSDUG00000023480	sbno1	95	80.866	ENSJJAG00000001741	Sbno1	99	80.866	Jaculus_jaculus
ENSSDUG00000023480	sbno1	100	92.893	ENSKMAG00000009696	sbno1	100	92.893	Kryptolebias_marmoratus
ENSSDUG00000023480	sbno1	100	91.974	ENSLBEG00000007623	sbno1	100	92.188	Labrus_bergylta
ENSSDUG00000023480	sbno1	100	72.426	ENSLACG00000017227	SBNO1	99	75.437	Latimeria_chalumnae
ENSSDUG00000023480	sbno1	100	81.773	ENSLOCG00000005725	sbno1	97	81.773	Lepisosteus_oculatus
ENSSDUG00000023480	sbno1	99	75.403	ENSLAFG00000002135	SBNO1	99	75.473	Loxodonta_africana
ENSSDUG00000023480	sbno1	95	81.250	ENSMFAG00000031429	SBNO1	99	81.250	Macaca_fascicularis
ENSSDUG00000023480	sbno1	95	81.250	ENSMMUG00000011496	SBNO1	99	81.250	Macaca_mulatta
ENSSDUG00000023480	sbno1	95	84.477	ENSMLEG00000033260	SBNO1	99	84.477	Mandrillus_leucophaeus
ENSSDUG00000023480	sbno1	100	93.674	ENSMAMG00000005473	sbno1	100	93.888	Mastacembelus_armatus
ENSSDUG00000023480	sbno1	98	76.163	ENSMGAG00000003274	SBNO1	99	76.342	Meleagris_gallopavo
ENSSDUG00000023480	sbno1	50	73.894	ENSMAUG00000004834	-	98	74.037	Mesocricetus_auratus
ENSSDUG00000023480	sbno1	95	81.670	ENSMICG00000006573	-	99	81.374	Microcebus_murinus
ENSSDUG00000023480	sbno1	95	84.116	ENSMOCG00000009390	Sbno1	99	84.116	Microtus_ochrogaster
ENSSDUG00000023480	sbno1	100	85.562	ENSMMOG00000008691	sbno1	99	86.131	Mola_mola
ENSSDUG00000023480	sbno1	99	75.351	ENSMODG00000012470	SBNO1	98	75.351	Monodelphis_domestica
ENSSDUG00000023480	sbno1	100	93.674	ENSMALG00000001056	sbno1	100	93.532	Monopterus_albus
ENSSDUG00000023480	sbno1	99	75.969	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.228	Mus_caroli
ENSSDUG00000023480	sbno1	99	76.321	ENSMUSG00000038095	Sbno1	94	91.228	Mus_musculus
ENSSDUG00000023480	sbno1	99	75.507	MGP_PahariEiJ_G0024329	Sbno1	95	91.228	Mus_pahari
ENSSDUG00000023480	sbno1	99	76.251	MGP_SPRETEiJ_G0028747	Sbno1	95	91.228	Mus_spretus
ENSSDUG00000023480	sbno1	99	75.893	ENSMPUG00000001658	SBNO1	99	75.753	Mustela_putorius_furo
ENSSDUG00000023480	sbno1	99	75.473	ENSMLUG00000017159	SBNO1	99	75.473	Myotis_lucifugus
ENSSDUG00000023480	sbno1	92	85.658	ENSNGAG00000012620	Sbno1	98	85.658	Nannospalax_galili
ENSSDUG00000023480	sbno1	100	88.541	ENSNBRG00000019189	sbno1	100	87.972	Neolamprologus_brichardi
ENSSDUG00000023480	sbno1	99	72.440	ENSNLEG00000001502	SBNO1	99	76.173	Nomascus_leucogenys
ENSSDUG00000023480	sbno1	62	73.585	ENSMEUG00000008768	-	93	76.101	Notamacropus_eugenii
ENSSDUG00000023480	sbno1	99	75.229	ENSOPRG00000011054	SBNO1	99	75.158	Ochotona_princeps
ENSSDUG00000023480	sbno1	95	84.991	ENSODEG00000009997	SBNO1	99	84.991	Octodon_degus
ENSSDUG00000023480	sbno1	100	92.974	ENSONIG00000015348	sbno1	100	92.690	Oreochromis_niloticus
ENSSDUG00000023480	sbno1	98	74.858	ENSOCUG00000002441	SBNO1	95	75.107	Oryctolagus_cuniculus
ENSSDUG00000023480	sbno1	100	90.496	ENSORLG00000001593	sbno1	100	90.426	Oryzias_latipes
ENSSDUG00000023480	sbno1	100	90.419	ENSORLG00020015216	sbno1	100	90.419	Oryzias_latipes_hni
ENSSDUG00000023480	sbno1	100	90.632	ENSORLG00015002726	sbno1	100	90.632	Oryzias_latipes_hsok
ENSSDUG00000023480	sbno1	99	90.598	ENSOMEG00000019313	sbno1	99	90.598	Oryzias_melastigma
ENSSDUG00000023480	sbno1	50	71.977	ENSOGAG00000010781	-	98	72.546	Otolemur_garnettii
ENSSDUG00000023480	sbno1	100	75.647	ENSOARG00000004404	SBNO1	99	75.647	Ovis_aries
ENSSDUG00000023480	sbno1	95	84.629	ENSPPAG00000024635	SBNO1	99	84.629	Pan_paniscus
ENSSDUG00000023480	sbno1	99	75.823	ENSPPRG00000022092	SBNO1	99	75.683	Panthera_pardus
ENSSDUG00000023480	sbno1	99	75.772	ENSPTIG00000017803	SBNO1	99	75.632	Panthera_tigris_altaica
ENSSDUG00000023480	sbno1	95	84.629	ENSPTRG00000005597	SBNO1	99	84.629	Pan_troglodytes
ENSSDUG00000023480	sbno1	95	84.477	ENSPANG00000011640	SBNO1	99	84.477	Papio_anubis
ENSSDUG00000023480	sbno1	100	81.215	ENSPKIG00000001441	sbno1	100	81.016	Paramormyrops_kingsleyae
ENSSDUG00000023480	sbno1	92	72.155	ENSPSIG00000009256	-	99	72.248	Pelodiscus_sinensis
ENSSDUG00000023480	sbno1	98	75.251	ENSPSIG00000009572	-	99	75.088	Pelodiscus_sinensis
ENSSDUG00000023480	sbno1	95	83.935	ENSPEMG00000016087	Sbno1	99	83.935	Peromyscus_maniculatus_bairdii
ENSSDUG00000023480	sbno1	99	75.228	ENSPCIG00000010985	SBNO1	99	75.509	Phascolarctos_cinereus
ENSSDUG00000023480	sbno1	100	92.253	ENSPFOG00000005069	sbno1	100	92.253	Poecilia_formosa
ENSSDUG00000023480	sbno1	100	92.395	ENSPLAG00000015015	sbno1	100	92.395	Poecilia_latipinna
ENSSDUG00000023480	sbno1	100	92.259	ENSPMEG00000021212	sbno1	100	92.259	Poecilia_mexicana
ENSSDUG00000023480	sbno1	100	91.690	ENSPREG00000017746	sbno1	100	91.690	Poecilia_reticulata
ENSSDUG00000023480	sbno1	99	75.368	ENSPPYG00000005084	SBNO1	99	75.579	Pongo_abelii
ENSSDUG00000023480	sbno1	88	68.800	ENSPCAG00000008634	SBNO1	88	68.449	Procavia_capensis
ENSSDUG00000023480	sbno1	95	84.882	ENSPCOG00000024277	SBNO1	99	84.882	Propithecus_coquereli
ENSSDUG00000023480	sbno1	87	84.493	ENSPVAG00000015304	SBNO1	87	84.493	Pteropus_vampyrus
ENSSDUG00000023480	sbno1	100	92.751	ENSPNYG00000004291	sbno1	100	92.111	Pundamilia_nyererei
ENSSDUG00000023480	sbno1	100	83.027	ENSPNAG00000015622	sbno1	100	82.815	Pygocentrus_nattereri
ENSSDUG00000023480	sbno1	95	84.116	ENSRNOG00000001064	Sbno1	99	84.268	Rattus_norvegicus
ENSSDUG00000023480	sbno1	95	84.477	ENSRROG00000034230	SBNO1	99	84.477	Rhinopithecus_roxellana
ENSSDUG00000023480	sbno1	97	73.038	ENSSBOG00000015422	SBNO1	99	72.965	Saimiri_boliviensis_boliviensis
ENSSDUG00000023480	sbno1	100	81.805	ENSSFOG00015019025	sbno1	100	82.511	Scleropages_formosus
ENSSDUG00000023480	sbno1	100	95.302	ENSSMAG00000013640	sbno1	100	95.302	Scophthalmus_maximus
ENSSDUG00000023480	sbno1	100	99.644	ENSSLDG00000007928	sbno1	100	99.644	Seriola_lalandi_dorsalis
ENSSDUG00000023480	sbno1	89	81.935	ENSSARG00000002594	SBNO1	89	82.258	Sorex_araneus
ENSSDUG00000023480	sbno1	98	75.484	ENSSPUG00000012640	SBNO1	99	75.389	Sphenodon_punctatus
ENSSDUG00000023480	sbno1	100	95.096	ENSSPAG00000016244	sbno1	100	95.096	Stegastes_partitus
ENSSDUG00000023480	sbno1	99	75.455	ENSSSCG00000009776	SBNO1	99	75.455	Sus_scrofa
ENSSDUG00000023480	sbno1	98	75.840	ENSTGUG00000005380	SBNO1	99	76.093	Taeniopygia_guttata
ENSSDUG00000023480	sbno1	99	88.778	ENSTRUG00000018490	sbno1	99	88.707	Takifugu_rubripes
ENSSDUG00000023480	sbno1	57	85.803	ENSTNIG00000013506	sbno1	99	86.090	Tetraodon_nigroviridis
ENSSDUG00000023480	sbno1	99	75.823	ENSUAMG00000019671	SBNO1	99	75.683	Ursus_americanus
ENSSDUG00000023480	sbno1	99	75.823	ENSUMAG00000004002	SBNO1	99	75.683	Ursus_maritimus
ENSSDUG00000023480	sbno1	95	73.333	ENSVPAG00000007024	SBNO1	95	73.333	Vicugna_pacos
ENSSDUG00000023480	sbno1	99	75.823	ENSVVUG00000027807	SBNO1	99	75.683	Vulpes_vulpes
ENSSDUG00000023480	sbno1	99	73.385	ENSXETG00000031930	SBNO1	99	72.944	Xenopus_tropicalis
ENSSDUG00000023480	sbno1	89	89.111	ENSXCOG00000011607	sbno1	99	87.822	Xiphophorus_couchianus
ENSSDUG00000023480	sbno1	100	91.974	ENSXMAG00000002140	sbno1	100	92.045	Xiphophorus_maculatus