EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000023498 (Gene tree)
Gene ID: 111239577
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 3230 bases
Position: chrBDQW01003009.1:504993-508222
Accession: 111239577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000032699	zf-C2H2	PF00096.26	1.2e-10	1	2
ENSSDUP00000032699	zf-C2H2	PF00096.26	1.2e-10	2	2
ENSSDUP00000032699	zf-met	PF12874.7	8.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000033260	-	1146	XM_022769482	ENSSDUP00000032699	381 (aa)	XP_022625203	-

Gene Model

Click here to download ENSSDUG00000023498's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000023498's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000023498	prdm12b	100	80.612	ENSSDUG00000019071	-	100	81.633
ENSSDUG00000023498	prdm12b	70	42.105	ENSSDUG00000020397	prdm5	94	42.105
ENSSDUG00000023498	prdm12b	68	36.059	ENSSDUG00000013311	prdm14	54	40.476

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000023498	prdm12b	90	81.503	ENSG00000130711	PRDM12	99	74.742	Homo_sapiens
ENSSDUG00000023498	prdm12b	100	93.798	ENSAPOG00000016051	prdm12b	100	93.798	Acanthochromis_polyacanthus
ENSSDUG00000023498	prdm12b	100	66.667	ENSAPOG00000018234	-	100	67.188	Acanthochromis_polyacanthus
ENSSDUG00000023498	prdm12b	90	79.825	ENSAMEG00000016234	PRDM12	99	80.117	Ailuropoda_melanoleuca
ENSSDUG00000023498	prdm12b	100	92.388	ENSACIG00000019578	prdm12b	100	92.126	Amphilophus_citrinellus
ENSSDUG00000023498	prdm12b	100	77.193	ENSACIG00000005193	-	100	77.387	Amphilophus_citrinellus
ENSSDUG00000023498	prdm12b	100	94.271	ENSAOCG00000015040	prdm12b	100	94.271	Amphiprion_ocellaris
ENSSDUG00000023498	prdm12b	100	93.750	ENSAPEG00000015092	prdm12b	100	93.750	Amphiprion_percula
ENSSDUG00000023498	prdm12b	100	72.250	ENSAPEG00000022849	-	99	72.750	Amphiprion_percula
ENSSDUG00000023498	prdm12b	100	80.407	ENSATEG00000014595	-	100	80.916	Anabas_testudineus
ENSSDUG00000023498	prdm12b	94	78.393	ENSANAG00000020616	PRDM12	99	78.393	Aotus_nancymaae
ENSSDUG00000023498	prdm12b	100	87.402	ENSACLG00000011876	prdm12b	100	87.402	Astatotilapia_calliptera
ENSSDUG00000023498	prdm12b	100	74.817	ENSACLG00000007631	-	100	75.735	Astatotilapia_calliptera
ENSSDUG00000023498	prdm12b	100	80.311	ENSAMXG00000033665	prdm12b	100	80.928	Astyanax_mexicanus
ENSSDUG00000023498	prdm12b	100	81.095	ENSAMXG00000008540	PRDM12	100	81.095	Astyanax_mexicanus
ENSSDUG00000023498	prdm12b	90	81.214	ENSBTAG00000023797	PRDM12	99	75.781	Bos_taurus
ENSSDUG00000023498	prdm12b	90	80.925	ENSCJAG00000020540	PRDM12	99	75.515	Callithrix_jacchus
ENSSDUG00000023498	prdm12b	79	81.250	ENSCAFG00000023076	PRDM12	99	74.927	Canis_familiaris
ENSSDUG00000023498	prdm12b	90	81.214	ENSCAFG00020024046	PRDM12	99	75.584	Canis_lupus_dingo
ENSSDUG00000023498	prdm12b	90	81.214	ENSCHIG00000025005	PRDM12	99	75.258	Capra_hircus
ENSSDUG00000023498	prdm12b	87	80.240	ENSCPOG00000005901	PRDM12	95	80.240	Cavia_porcellus
ENSSDUG00000023498	prdm12b	90	80.925	ENSCCAG00000037485	PRDM12	99	75.000	Cebus_capucinus
ENSSDUG00000023498	prdm12b	90	80.925	ENSCATG00000020327	PRDM12	99	75.000	Cercocebus_atys
ENSSDUG00000023498	prdm12b	90	80.636	ENSCLAG00000005499	PRDM12	89	80.636	Chinchilla_lanigera
ENSSDUG00000023498	prdm12b	90	80.925	ENSCSAG00000014756	PRDM12	99	75.065	Chlorocebus_sabaeus
ENSSDUG00000023498	prdm12b	100	78.125	ENSCPBG00000022628	PRDM12	99	78.125	Chrysemys_picta_bellii
ENSSDUG00000023498	prdm12b	90	81.214	ENSCGRG00001015005	Prdm12	99	75.258	Cricetulus_griseus_chok1gshd
ENSSDUG00000023498	prdm12b	100	78.680	ENSCVAG00000000944	-	100	80.203	Cyprinodon_variegatus
ENSSDUG00000023498	prdm12b	100	87.240	ENSCVAG00000017166	prdm12b	100	87.532	Cyprinodon_variegatus
ENSSDUG00000023498	prdm12b	100	81.818	ENSDARG00000007430	prdm12b	100	81.558	Danio_rerio
ENSSDUG00000023498	prdm12b	90	80.692	ENSDNOG00000042302	PRDM12	99	75.194	Dasypus_novemcinctus
ENSSDUG00000023498	prdm12b	85	66.667	ENSEBUG00000016780	prdm12b	73	67.964	Eptatretus_burgeri
ENSSDUG00000023498	prdm12b	94	78.670	ENSEASG00005008472	PRDM12	99	75.515	Equus_asinus_asinus
ENSSDUG00000023498	prdm12b	94	78.670	ENSECAG00000005933	PRDM12	99	75.515	Equus_caballus
ENSSDUG00000023498	prdm12b	100	83.990	ENSELUG00000013674	PRDM12	100	85.677	Esox_lucius
ENSSDUG00000023498	prdm12b	100	81.137	ENSELUG00000009905	prdm12b	100	81.137	Esox_lucius
ENSSDUG00000023498	prdm12b	90	81.214	ENSFCAG00000043086	PRDM12	99	75.521	Felis_catus
ENSSDUG00000023498	prdm12b	100	77.865	ENSFALG00000001445	PRDM12	89	77.865	Ficedula_albicollis
ENSSDUG00000023498	prdm12b	100	87.013	ENSFHEG00000003944	prdm12b	100	88.052	Fundulus_heteroclitus
ENSSDUG00000023498	prdm12b	100	74.634	ENSFHEG00000007746	-	100	75.309	Fundulus_heteroclitus
ENSSDUG00000023498	prdm12b	100	81.586	ENSGMOG00000011797	prdm12b	100	81.934	Gadus_morhua
ENSSDUG00000023498	prdm12b	100	77.865	ENSGALG00000003895	PRDM12	99	77.865	Gallus_gallus
ENSSDUG00000023498	prdm12b	100	86.856	ENSGAFG00000010827	prdm12b	99	87.113	Gambusia_affinis
ENSSDUG00000023498	prdm12b	100	90.365	ENSGACG00000016713	prdm12b	99	89.844	Gasterosteus_aculeatus
ENSSDUG00000023498	prdm12b	100	78.125	ENSGAGG00000014083	PRDM12	99	78.125	Gopherus_agassizii
ENSSDUG00000023498	prdm12b	90	81.214	ENSGGOG00000010568	PRDM12	99	74.485	Gorilla_gorilla
ENSSDUG00000023498	prdm12b	100	91.601	ENSHBUG00000022878	prdm12b	100	91.601	Haplochromis_burtoni
ENSSDUG00000023498	prdm12b	100	74.817	ENSHBUG00000022537	-	93	75.735	Haplochromis_burtoni
ENSSDUG00000023498	prdm12b	90	80.925	ENSHGLG00000013939	PRDM12	99	74.809	Heterocephalus_glaber_female
ENSSDUG00000023498	prdm12b	90	87.896	ENSHCOG00000003663	prdm12b	100	80.798	Hippocampus_comes
ENSSDUG00000023498	prdm12b	100	70.909	ENSHCOG00000021167	-	100	70.909	Hippocampus_comes
ENSSDUG00000023498	prdm12b	100	82.902	ENSIPUG00000017053	prdm12b	100	82.902	Ictalurus_punctatus
ENSSDUG00000023498	prdm12b	100	76.378	ENSIPUG00000019544	PRDM12	100	76.378	Ictalurus_punctatus
ENSSDUG00000023498	prdm12b	95	78.689	ENSSTOG00000005986	PRDM12	89	78.689	Ictidomys_tridecemlineatus
ENSSDUG00000023498	prdm12b	90	81.214	ENSJJAG00000005424	Prdm12	98	81.214	Jaculus_jaculus
ENSSDUG00000023498	prdm12b	94	77.839	ENSKMAG00000021205	-	94	77.260	Kryptolebias_marmoratus
ENSSDUG00000023498	prdm12b	100	82.641	ENSKMAG00000016921	prdm12b	100	83.374	Kryptolebias_marmoratus
ENSSDUG00000023498	prdm12b	100	80.256	ENSLBEG00000007776	-	100	80.000	Labrus_bergylta
ENSSDUG00000023498	prdm12b	100	88.205	ENSLBEG00000017769	prdm12b	100	88.205	Labrus_bergylta
ENSSDUG00000023498	prdm12b	100	77.546	ENSLACG00000017560	PRDM12	99	77.023	Latimeria_chalumnae
ENSSDUG00000023498	prdm12b	100	83.073	ENSLOCG00000005429	prdm12b	100	84.156	Lepisosteus_oculatus
ENSSDUG00000023498	prdm12b	90	81.341	ENSLAFG00000006979	PRDM12	92	77.384	Loxodonta_africana
ENSSDUG00000023498	prdm12b	90	80.636	ENSMFAG00000040322	PRDM12	99	74.485	Macaca_fascicularis
ENSSDUG00000023498	prdm12b	90	80.925	ENSMNEG00000037234	PRDM12	99	75.000	Macaca_nemestrina
ENSSDUG00000023498	prdm12b	100	73.105	ENSMAMG00000018988	-	100	74.510	Mastacembelus_armatus
ENSSDUG00000023498	prdm12b	100	94.010	ENSMAMG00000013212	prdm12b	100	94.010	Mastacembelus_armatus
ENSSDUG00000023498	prdm12b	100	74.453	ENSMZEG00005000415	PRDM12	100	75.854	Maylandia_zebra
ENSSDUG00000023498	prdm12b	98	77.513	ENSMGAG00000005438	PRDM12	98	77.513	Meleagris_gallopavo
ENSSDUG00000023498	prdm12b	100	75.457	ENSMAUG00000013040	Prdm12	99	75.130	Mesocricetus_auratus
ENSSDUG00000023498	prdm12b	90	81.214	ENSMICG00000015480	PRDM12	99	74.742	Microcebus_murinus
ENSSDUG00000023498	prdm12b	95	78.904	ENSMOCG00000021026	Prdm12	93	78.947	Microtus_ochrogaster
ENSSDUG00000023498	prdm12b	100	77.865	ENSMODG00000012108	PRDM12	99	77.865	Monodelphis_domestica
ENSSDUG00000023498	prdm12b	84	87.616	ENSMALG00000021901	prdm12b	96	86.687	Monopterus_albus
ENSSDUG00000023498	prdm12b	90	81.214	MGP_CAROLIEiJ_G0023414	Prdm12	99	75.258	Mus_caroli
ENSSDUG00000023498	prdm12b	90	81.214	ENSMUSG00000079466	Prdm12	99	75.258	Mus_musculus
ENSSDUG00000023498	prdm12b	90	81.214	MGP_PahariEiJ_G0024871	Prdm12	99	75.258	Mus_pahari
ENSSDUG00000023498	prdm12b	90	81.214	MGP_SPRETEiJ_G0024331	Prdm12	99	75.258	Mus_spretus
ENSSDUG00000023498	prdm12b	90	81.214	ENSNGAG00000018480	Prdm12	99	75.781	Nannospalax_galili
ENSSDUG00000023498	prdm12b	100	72.051	ENSNBRG00000024312	-	100	72.494	Neolamprologus_brichardi
ENSSDUG00000023498	prdm12b	100	92.388	ENSNBRG00000006727	prdm12b	100	92.126	Neolamprologus_brichardi
ENSSDUG00000023498	prdm12b	100	56.234	ENSMEUG00000003828	PRDM12	86	85.417	Notamacropus_eugenii
ENSSDUG00000023498	prdm12b	90	80.925	ENSOPRG00000008680	PRDM12	98	80.925	Ochotona_princeps
ENSSDUG00000023498	prdm12b	98	77.333	ENSODEG00000016282	PRDM12	65	77.333	Octodon_degus
ENSSDUG00000023498	prdm12b	64	75.102	ENSOANG00000001043	PRDM12	100	74.694	Ornithorhynchus_anatinus
ENSSDUG00000023498	prdm12b	83	80.374	ENSOCUG00000008241	PRDM12	96	80.374	Oryctolagus_cuniculus
ENSSDUG00000023498	prdm12b	100	77.057	ENSORLG00000017558	-	100	78.055	Oryzias_latipes
ENSSDUG00000023498	prdm12b	100	88.831	ENSORLG00000007114	prdm12b	99	88.571	Oryzias_latipes
ENSSDUG00000023498	prdm12b	100	87.339	ENSORLG00020019565	prdm12b	99	88.114	Oryzias_latipes_hni
ENSSDUG00000023498	prdm12b	100	77.307	ENSORLG00020013167	-	100	78.304	Oryzias_latipes_hni
ENSSDUG00000023498	prdm12b	100	88.312	ENSORLG00015007621	prdm12b	99	88.571	Oryzias_latipes_hsok
ENSSDUG00000023498	prdm12b	100	77.057	ENSORLG00015003435	-	100	78.055	Oryzias_latipes_hsok
ENSSDUG00000023498	prdm12b	100	78.772	ENSOMEG00000007762	-	100	78.517	Oryzias_melastigma
ENSSDUG00000023498	prdm12b	100	89.896	ENSOMEG00000004134	prdm12b	99	89.896	Oryzias_melastigma
ENSSDUG00000023498	prdm12b	90	81.214	ENSOGAG00000007557	PRDM12	97	81.214	Otolemur_garnettii
ENSSDUG00000023498	prdm12b	80	79.221	ENSPPAG00000031506	-	97	78.571	Pan_paniscus
ENSSDUG00000023498	prdm12b	100	69.792	ENSPPRG00000023024	PRDM12	92	69.792	Panthera_pardus
ENSSDUG00000023498	prdm12b	90	81.503	ENSPTRG00000043324	-	99	74.742	Pan_troglodytes
ENSSDUG00000023498	prdm12b	90	81.503	ENSPTRG00000021475	PRDM12	99	74.742	Pan_troglodytes
ENSSDUG00000023498	prdm12b	90	80.925	ENSPANG00000025967	PRDM12	99	75.000	Papio_anubis
ENSSDUG00000023498	prdm12b	100	82.292	ENSPKIG00000007228	prdm12b	100	83.636	Paramormyrops_kingsleyae
ENSSDUG00000023498	prdm12b	90	81.449	ENSPKIG00000004305	PRDM12	94	80.870	Paramormyrops_kingsleyae
ENSSDUG00000023498	prdm12b	100	78.385	ENSPSIG00000006739	PRDM12	99	78.385	Pelodiscus_sinensis
ENSSDUG00000023498	prdm12b	100	88.976	ENSPMGG00000008867	prdm12b	99	89.239	Periophthalmus_magnuspinnatus
ENSSDUG00000023498	prdm12b	100	73.750	ENSPMGG00000002356	-	100	72.794	Periophthalmus_magnuspinnatus
ENSSDUG00000023498	prdm12b	95	78.415	ENSPEMG00000009969	Prdm12	97	76.923	Peromyscus_maniculatus_bairdii
ENSSDUG00000023498	prdm12b	100	77.865	ENSPCIG00000024119	PRDM12	99	77.865	Phascolarctos_cinereus
ENSSDUG00000023498	prdm12b	100	86.788	ENSPFOG00000019841	prdm12b	100	86.269	Poecilia_formosa
ENSSDUG00000023498	prdm12b	100	85.861	ENSPLAG00000016626	prdm12b	99	86.701	Poecilia_latipinna
ENSSDUG00000023498	prdm12b	96	85.942	ENSPMEG00000016698	prdm12b	99	86.472	Poecilia_mexicana
ENSSDUG00000023498	prdm12b	95	73.854	ENSPREG00000003211	-	94	73.585	Poecilia_reticulata
ENSSDUG00000023498	prdm12b	100	85.714	ENSPREG00000015073	prdm12b	99	86.224	Poecilia_reticulata
ENSSDUG00000023498	prdm12b	94	78.670	ENSPPYG00000019694	PRDM12	97	78.670	Pongo_abelii
ENSSDUG00000023498	prdm12b	90	81.214	ENSPCOG00000022255	PRDM12	99	75.258	Propithecus_coquereli
ENSSDUG00000023498	prdm12b	90	81.214	ENSPVAG00000001511	PRDM12	99	75.452	Pteropus_vampyrus
ENSSDUG00000023498	prdm12b	100	74.453	ENSPNYG00000013589	-	100	75.610	Pundamilia_nyererei
ENSSDUG00000023498	prdm12b	100	91.864	ENSPNYG00000009607	prdm12b	100	91.601	Pundamilia_nyererei
ENSSDUG00000023498	prdm12b	100	78.036	ENSPNAG00000013396	PRDM12	100	78.295	Pygocentrus_nattereri
ENSSDUG00000023498	prdm12b	100	81.771	ENSPNAG00000024532	prdm12b	100	82.383	Pygocentrus_nattereri
ENSSDUG00000023498	prdm12b	90	81.214	ENSRNOG00000009218	Prdm12	99	75.258	Rattus_norvegicus
ENSSDUG00000023498	prdm12b	88	80.769	ENSRBIG00000042712	PRDM12	99	73.822	Rhinopithecus_bieti
ENSSDUG00000023498	prdm12b	89	81.579	ENSRROG00000043554	PRDM12	99	80.994	Rhinopithecus_roxellana
ENSSDUG00000023498	prdm12b	100	77.403	ENSSHAG00000015972	PRDM12	99	77.403	Sarcophilus_harrisii
ENSSDUG00000023498	prdm12b	100	89.487	ENSSMAG00000003754	prdm12b	100	90.000	Scophthalmus_maximus
ENSSDUG00000023498	prdm12b	100	97.135	ENSSLDG00000009557	prdm12b	100	97.135	Seriola_lalandi_dorsalis
ENSSDUG00000023498	prdm12b	100	75.979	ENSSLDG00000013562	-	100	75.718	Seriola_lalandi_dorsalis
ENSSDUG00000023498	prdm12b	100	77.807	ENSSPUG00000013424	PRDM12	99	77.807	Sphenodon_punctatus
ENSSDUG00000023498	prdm12b	100	92.448	ENSSPAG00000018824	prdm12b	100	93.229	Stegastes_partitus
ENSSDUG00000023498	prdm12b	100	72.519	ENSSPAG00000022420	-	100	73.537	Stegastes_partitus
ENSSDUG00000023498	prdm12b	90	81.214	ENSSSCG00000005703	PRDM12	99	75.584	Sus_scrofa
ENSSDUG00000023498	prdm12b	100	89.239	ENSTRUG00000018659	prdm12b	100	89.239	Takifugu_rubripes
ENSSDUG00000023498	prdm12b	100	76.883	ENSTRUG00000013239	-	100	76.364	Takifugu_rubripes
ENSSDUG00000023498	prdm12b	100	74.740	ENSTNIG00000005859	-	99	74.219	Tetraodon_nigroviridis
ENSSDUG00000023498	prdm12b	100	88.189	ENSTNIG00000009020	prdm12b	99	88.189	Tetraodon_nigroviridis
ENSSDUG00000023498	prdm12b	90	81.214	ENSUAMG00000009653	PRDM12	95	77.898	Ursus_americanus
ENSSDUG00000023498	prdm12b	90	81.214	ENSVVUG00000027662	PRDM12	77	81.214	Vulpes_vulpes
ENSSDUG00000023498	prdm12b	100	87.500	ENSXCOG00000002836	prdm12b	99	88.083	Xiphophorus_couchianus
ENSSDUG00000023498	prdm12b	100	75.854	ENSXMAG00000028012	-	100	77.641	Xiphophorus_maculatus
ENSSDUG00000023498	prdm12b	100	86.305	ENSXMAG00000005537	prdm12b	100	86.889	Xiphophorus_maculatus