EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000023566 (Gene tree)
Gene ID: 111235259
Gene Symbol: si:dkey-85a20.4
Alias: -
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 12527 bases
Position: chrBDQW01000024.1:2125032-2137558
Accession: 111235259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000032790	SpoU_methylase	PF00588.19	6.5e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000033352	-	4596	XM_022763662	ENSSDUP00000032790	1531 (aa)	XP_022619383	-

Gene Model

Click here to download ENSSDUG00000023566's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000023566's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000023566	si:dkey-85a20.4	86	44.728	ENSG00000059588	TARBP1	99	41.828	Homo_sapiens
ENSSDUG00000023566	si:dkey-85a20.4	99	77.689	ENSAPOG00000016419	si:dkey-85a20.4	99	77.689	Acanthochromis_polyacanthus
ENSSDUG00000023566	si:dkey-85a20.4	84	43.814	ENSAMEG00000003359	TARBP1	99	43.456	Ailuropoda_melanoleuca
ENSSDUG00000023566	si:dkey-85a20.4	100	78.010	ENSATEG00000020266	si:dkey-85a20.4	100	78.010	Anabas_testudineus
ENSSDUG00000023566	si:dkey-85a20.4	83	44.412	ENSAPLG00000007666	TARBP1	99	45.000	Anas_platyrhynchos
ENSSDUG00000023566	si:dkey-85a20.4	83	42.217	ENSACAG00000001142	TARBP1	86	41.786	Anolis_carolinensis
ENSSDUG00000023566	si:dkey-85a20.4	86	43.481	ENSANAG00000022031	TARBP1	88	43.617	Aotus_nancymaae
ENSSDUG00000023566	si:dkey-85a20.4	79	51.657	ENSBTAG00000004517	TARBP1	90	51.657	Bos_taurus
ENSSDUG00000023566	si:dkey-85a20.4	99	40.989	ENSCJAG00000018155	TARBP1	99	41.255	Callithrix_jacchus
ENSSDUG00000023566	si:dkey-85a20.4	85	44.063	ENSCAFG00000011533	TARBP1	98	43.817	Canis_familiaris
ENSSDUG00000023566	si:dkey-85a20.4	85	44.054	ENSCAFG00020027141	TARBP1	99	41.105	Canis_lupus_dingo
ENSSDUG00000023566	si:dkey-85a20.4	88	43.689	ENSCHIG00000011437	TARBP1	91	42.933	Capra_hircus
ENSSDUG00000023566	si:dkey-85a20.4	80	44.639	ENSTSYG00000010382	TARBP1	96	44.487	Carlito_syrichta
ENSSDUG00000023566	si:dkey-85a20.4	78	42.408	ENSCAPG00000010831	TARBP1	99	42.080	Cavia_aperea
ENSSDUG00000023566	si:dkey-85a20.4	85	43.843	ENSCPOG00000013995	TARBP1	92	42.004	Cavia_porcellus
ENSSDUG00000023566	si:dkey-85a20.4	86	44.507	ENSCCAG00000037278	TARBP1	99	41.570	Cebus_capucinus
ENSSDUG00000023566	si:dkey-85a20.4	86	44.437	ENSCATG00000011754	TARBP1	99	41.144	Cercocebus_atys
ENSSDUG00000023566	si:dkey-85a20.4	80	44.018	ENSCLAG00000003655	TARBP1	96	44.018	Chinchilla_lanigera
ENSSDUG00000023566	si:dkey-85a20.4	79	45.027	ENSCSAG00000010100	TARBP1	99	44.907	Chlorocebus_sabaeus
ENSSDUG00000023566	si:dkey-85a20.4	77	43.638	ENSCPBG00000005587	TARBP1	97	39.883	Chrysemys_picta_bellii
ENSSDUG00000023566	si:dkey-85a20.4	83	45.161	ENSCANG00000034343	TARBP1	99	44.582	Colobus_angolensis_palliatus
ENSSDUG00000023566	si:dkey-85a20.4	85	43.960	ENSCGRG00001016690	Tarbp1	87	43.960	Cricetulus_griseus_chok1gshd
ENSSDUG00000023566	si:dkey-85a20.4	85	43.960	ENSCGRG00000016893	Tarbp1	94	43.960	Cricetulus_griseus_crigri
ENSSDUG00000023566	si:dkey-85a20.4	99	69.714	ENSCSEG00000005255	si:dkey-85a20.4	100	69.460	Cynoglossus_semilaevis
ENSSDUG00000023566	si:dkey-85a20.4	99	56.830	ENSDARG00000079055	si:dkey-85a20.4	99	68.205	Danio_rerio
ENSSDUG00000023566	si:dkey-85a20.4	92	42.718	ENSDNOG00000008637	TARBP1	99	41.488	Dasypus_novemcinctus
ENSSDUG00000023566	si:dkey-85a20.4	80	44.935	ENSDORG00000007984	Tarbp1	100	44.841	Dipodomys_ordii
ENSSDUG00000023566	si:dkey-85a20.4	85	44.246	ENSEASG00005000252	TARBP1	91	43.251	Equus_asinus_asinus
ENSSDUG00000023566	si:dkey-85a20.4	85	44.993	ENSECAG00000023673	TARBP1	83	48.794	Equus_caballus
ENSSDUG00000023566	si:dkey-85a20.4	99	62.563	ENSELUG00000012193	si:dkey-85a20.4	99	62.563	Esox_lucius
ENSSDUG00000023566	si:dkey-85a20.4	85	42.267	ENSFCAG00000014183	TARBP1	91	40.966	Felis_catus
ENSSDUG00000023566	si:dkey-85a20.4	80	45.233	ENSFALG00000013565	TARBP1	99	45.080	Ficedula_albicollis
ENSSDUG00000023566	si:dkey-85a20.4	79	43.215	ENSFDAG00000001308	TARBP1	99	43.215	Fukomys_damarensis
ENSSDUG00000023566	si:dkey-85a20.4	99	66.131	ENSFHEG00000007565	si:dkey-85a20.4	99	65.938	Fundulus_heteroclitus
ENSSDUG00000023566	si:dkey-85a20.4	86	63.514	ENSGMOG00000004549	si:dkey-85a20.4	100	63.585	Gadus_morhua
ENSSDUG00000023566	si:dkey-85a20.4	83	43.847	ENSGALG00000011000	TARBP1	99	41.129	Gallus_gallus
ENSSDUG00000023566	si:dkey-85a20.4	100	69.736	ENSGAFG00000007387	si:dkey-85a20.4	100	69.675	Gambusia_affinis
ENSSDUG00000023566	si:dkey-85a20.4	86	75.704	ENSGACG00000005865	si:dkey-85a20.4	99	75.423	Gasterosteus_aculeatus
ENSSDUG00000023566	si:dkey-85a20.4	83	45.764	ENSGAGG00000012102	TARBP1	89	45.409	Gopherus_agassizii
ENSSDUG00000023566	si:dkey-85a20.4	84	43.560	ENSGGOG00000022879	TARBP1	99	43.263	Gorilla_gorilla
ENSSDUG00000023566	si:dkey-85a20.4	100	76.724	ENSHBUG00000008877	si:dkey-85a20.4	100	76.724	Haplochromis_burtoni
ENSSDUG00000023566	si:dkey-85a20.4	85	44.168	ENSHGLG00000011592	TARBP1	93	42.623	Heterocephalus_glaber_female
ENSSDUG00000023566	si:dkey-85a20.4	85	44.239	ENSHGLG00100015169	TARBP1	95	44.057	Heterocephalus_glaber_male
ENSSDUG00000023566	si:dkey-85a20.4	96	58.360	ENSIPUG00000005249	si:dkey-85a20.4	98	54.019	Ictalurus_punctatus
ENSSDUG00000023566	si:dkey-85a20.4	82	44.092	ENSSTOG00000032291	TARBP1	96	44.174	Ictidomys_tridecemlineatus
ENSSDUG00000023566	si:dkey-85a20.4	84	41.709	ENSJJAG00000017840	Tarbp1	94	41.493	Jaculus_jaculus
ENSSDUG00000023566	si:dkey-85a20.4	93	68.401	ENSKMAG00000017546	si:dkey-85a20.4	93	73.204	Kryptolebias_marmoratus
ENSSDUG00000023566	si:dkey-85a20.4	87	78.697	ENSLBEG00000012132	si:dkey-85a20.4	93	78.804	Labrus_bergylta
ENSSDUG00000023566	si:dkey-85a20.4	99	41.757	ENSLACG00000004337	TARBP1	100	42.150	Latimeria_chalumnae
ENSSDUG00000023566	si:dkey-85a20.4	99	52.477	ENSLOCG00000016214	si:dkey-85a20.4	100	52.667	Lepisosteus_oculatus
ENSSDUG00000023566	si:dkey-85a20.4	85	44.076	ENSLAFG00000011394	TARBP1	95	42.528	Loxodonta_africana
ENSSDUG00000023566	si:dkey-85a20.4	86	42.949	ENSMFAG00000041068	TARBP1	99	39.915	Macaca_fascicularis
ENSSDUG00000023566	si:dkey-85a20.4	86	42.877	ENSMMUG00000021703	TARBP1	92	41.032	Macaca_mulatta
ENSSDUG00000023566	si:dkey-85a20.4	86	44.437	ENSMNEG00000045002	TARBP1	92	42.535	Macaca_nemestrina
ENSSDUG00000023566	si:dkey-85a20.4	83	44.575	ENSMLEG00000044182	TARBP1	99	44.387	Mandrillus_leucophaeus
ENSSDUG00000023566	si:dkey-85a20.4	100	78.261	ENSMAMG00000021760	si:dkey-85a20.4	100	78.135	Mastacembelus_armatus
ENSSDUG00000023566	si:dkey-85a20.4	100	76.663	ENSMZEG00005005751	si:dkey-85a20.4	100	76.663	Maylandia_zebra
ENSSDUG00000023566	si:dkey-85a20.4	85	44.224	ENSMAUG00000020968	Tarbp1	87	44.286	Mesocricetus_auratus
ENSSDUG00000023566	si:dkey-85a20.4	88	39.834	ENSMICG00000015280	TARBP1	99	38.499	Microcebus_murinus
ENSSDUG00000023566	si:dkey-85a20.4	85	43.410	ENSMOCG00000004128	Tarbp1	87	43.410	Microtus_ochrogaster
ENSSDUG00000023566	si:dkey-85a20.4	99	74.651	ENSMMOG00000007795	si:dkey-85a20.4	99	74.651	Mola_mola
ENSSDUG00000023566	si:dkey-85a20.4	99	40.456	ENSMODG00000008504	TARBP1	99	40.955	Monodelphis_domestica
ENSSDUG00000023566	si:dkey-85a20.4	99	77.764	ENSMALG00000002916	si:dkey-85a20.4	99	77.446	Monopterus_albus
ENSSDUG00000023566	si:dkey-85a20.4	99	41.481	MGP_CAROLIEiJ_G0031729	Tarbp1	99	41.235	Mus_caroli
ENSSDUG00000023566	si:dkey-85a20.4	99	41.234	ENSMUSG00000090290	Tarbp1	99	40.990	Mus_musculus
ENSSDUG00000023566	si:dkey-85a20.4	99	41.274	MGP_PahariEiJ_G0023326	Tarbp1	99	41.202	Mus_pahari
ENSSDUG00000023566	si:dkey-85a20.4	99	41.402	MGP_SPRETEiJ_G0032846	Tarbp1	100	41.159	Mus_spretus
ENSSDUG00000023566	si:dkey-85a20.4	77	44.972	ENSMPUG00000002802	TARBP1	99	44.701	Mustela_putorius_furo
ENSSDUG00000023566	si:dkey-85a20.4	84	42.898	ENSMLUG00000002414	TARBP1	99	42.713	Myotis_lucifugus
ENSSDUG00000023566	si:dkey-85a20.4	86	44.728	ENSNLEG00000002518	TARBP1	99	41.586	Nomascus_leucogenys
ENSSDUG00000023566	si:dkey-85a20.4	65	55.460	ENSMEUG00000011370	-	65	55.460	Notamacropus_eugenii
ENSSDUG00000023566	si:dkey-85a20.4	69	51.510	ENSOPRG00000013822	TARBP1	69	51.510	Ochotona_princeps
ENSSDUG00000023566	si:dkey-85a20.4	85	43.581	ENSODEG00000005238	TARBP1	98	41.112	Octodon_degus
ENSSDUG00000023566	si:dkey-85a20.4	86	77.373	ENSONIG00000009789	si:dkey-85a20.4	100	77.373	Oreochromis_niloticus
ENSSDUG00000023566	si:dkey-85a20.4	85	43.670	ENSOCUG00000017418	TARBP1	99	40.835	Oryctolagus_cuniculus
ENSSDUG00000023566	si:dkey-85a20.4	99	66.215	ENSORLG00000010529	si:dkey-85a20.4	99	66.277	Oryzias_latipes
ENSSDUG00000023566	si:dkey-85a20.4	99	66.338	ENSORLG00020019264	si:dkey-85a20.4	99	66.400	Oryzias_latipes_hni
ENSSDUG00000023566	si:dkey-85a20.4	99	65.969	ENSORLG00015003276	si:dkey-85a20.4	99	66.031	Oryzias_latipes_hsok
ENSSDUG00000023566	si:dkey-85a20.4	88	42.011	ENSOGAG00000002379	TARBP1	91	41.452	Otolemur_garnettii
ENSSDUG00000023566	si:dkey-85a20.4	85	44.444	ENSOARG00000003434	TARBP1	92	44.279	Ovis_aries
ENSSDUG00000023566	si:dkey-85a20.4	83	45.033	ENSPPAG00000028097	TARBP1	99	44.825	Pan_paniscus
ENSSDUG00000023566	si:dkey-85a20.4	84	42.826	ENSPPRG00000013561	TARBP1	88	42.319	Panthera_pardus
ENSSDUG00000023566	si:dkey-85a20.4	82	43.580	ENSPTIG00000009281	TARBP1	99	43.465	Panthera_tigris_altaica
ENSSDUG00000023566	si:dkey-85a20.4	86	44.728	ENSPTRG00000002124	TARBP1	99	41.398	Pan_troglodytes
ENSSDUG00000023566	si:dkey-85a20.4	86	44.365	ENSPANG00000021933	TARBP1	92	42.468	Papio_anubis
ENSSDUG00000023566	si:dkey-85a20.4	99	56.900	ENSPKIG00000016716	si:dkey-85a20.4	99	56.822	Paramormyrops_kingsleyae
ENSSDUG00000023566	si:dkey-85a20.4	79	44.798	ENSPSIG00000010699	TARBP1	99	44.643	Pelodiscus_sinensis
ENSSDUG00000023566	si:dkey-85a20.4	85	43.875	ENSPEMG00000006888	Tarbp1	92	43.875	Peromyscus_maniculatus_bairdii
ENSSDUG00000023566	si:dkey-85a20.4	76	69.072	ENSPCIG00000029710	TARBP1	82	69.072	Phascolarctos_cinereus
ENSSDUG00000023566	si:dkey-85a20.4	86	71.286	ENSPFOG00000013020	si:dkey-85a20.4	99	71.071	Poecilia_formosa
ENSSDUG00000023566	si:dkey-85a20.4	99	69.797	ENSPLAG00000006044	si:dkey-85a20.4	99	69.613	Poecilia_latipinna
ENSSDUG00000023566	si:dkey-85a20.4	99	69.982	ENSPMEG00000017857	si:dkey-85a20.4	99	69.797	Poecilia_mexicana
ENSSDUG00000023566	si:dkey-85a20.4	100	69.589	ENSPREG00000022753	si:dkey-85a20.4	100	69.405	Poecilia_reticulata
ENSSDUG00000023566	si:dkey-85a20.4	76	44.050	ENSPPYG00000000102	TARBP1	99	43.688	Pongo_abelii
ENSSDUG00000023566	si:dkey-85a20.4	67	77.551	ENSPCAG00000004808	TARBP1	73	77.551	Procavia_capensis
ENSSDUG00000023566	si:dkey-85a20.4	85	42.928	ENSPCOG00000005666	TARBP1	92	41.226	Propithecus_coquereli
ENSSDUG00000023566	si:dkey-85a20.4	82	60.702	ENSPVAG00000014798	TARBP1	96	57.929	Pteropus_vampyrus
ENSSDUG00000023566	si:dkey-85a20.4	99	75.823	ENSPNYG00000019135	si:dkey-85a20.4	99	75.823	Pundamilia_nyererei
ENSSDUG00000023566	si:dkey-85a20.4	92	40.924	ENSRNOG00000053574	Tarbp1	93	40.765	Rattus_norvegicus
ENSSDUG00000023566	si:dkey-85a20.4	86	41.738	ENSRBIG00000043362	TARBP1	94	41.625	Rhinopithecus_bieti
ENSSDUG00000023566	si:dkey-85a20.4	86	44.579	ENSRROG00000029527	TARBP1	89	44.262	Rhinopithecus_roxellana
ENSSDUG00000023566	si:dkey-85a20.4	83	44.428	ENSSBOG00000034503	TARBP1	96	44.461	Saimiri_boliviensis_boliviensis
ENSSDUG00000023566	si:dkey-85a20.4	83	44.314	ENSSHAG00000000013	TARBP1	99	44.150	Sarcophilus_harrisii
ENSSDUG00000023566	si:dkey-85a20.4	99	54.940	ENSSFOG00015002660	si:dkey-85a20.4	97	60.076	Scleropages_formosus
ENSSDUG00000023566	si:dkey-85a20.4	100	76.727	ENSSMAG00000007081	si:dkey-85a20.4	100	76.848	Scophthalmus_maximus
ENSSDUG00000023566	si:dkey-85a20.4	99	91.280	ENSSLDG00000020200	si:dkey-85a20.4	100	91.280	Seriola_lalandi_dorsalis
ENSSDUG00000023566	si:dkey-85a20.4	75	54.779	ENSSARG00000012207	TARBP1	76	54.779	Sorex_araneus
ENSSDUG00000023566	si:dkey-85a20.4	97	41.202	ENSSPUG00000015364	TARBP1	99	41.430	Sphenodon_punctatus
ENSSDUG00000023566	si:dkey-85a20.4	99	78.269	ENSSPAG00000007213	si:dkey-85a20.4	99	78.269	Stegastes_partitus
ENSSDUG00000023566	si:dkey-85a20.4	85	45.316	ENSSSCG00000010160	TARBP1	99	42.232	Sus_scrofa
ENSSDUG00000023566	si:dkey-85a20.4	80	44.885	ENSTGUG00000010214	TARBP1	99	44.928	Taeniopygia_guttata
ENSSDUG00000023566	si:dkey-85a20.4	95	64.560	ENSTNIG00000016586	si:dkey-85a20.4	99	70.389	Tetraodon_nigroviridis
ENSSDUG00000023566	si:dkey-85a20.4	80	39.879	ENSTTRG00000008707	TARBP1	85	39.668	Tursiops_truncatus
ENSSDUG00000023566	si:dkey-85a20.4	80	43.783	ENSUMAG00000006730	TARBP1	97	43.774	Ursus_maritimus
ENSSDUG00000023566	si:dkey-85a20.4	63	76.344	ENSVPAG00000007665	TARBP1	73	76.344	Vicugna_pacos
ENSSDUG00000023566	si:dkey-85a20.4	84	44.493	ENSVVUG00000007460	TARBP1	99	46.324	Vulpes_vulpes
ENSSDUG00000023566	si:dkey-85a20.4	83	42.420	ENSXETG00000016224	tarbp1	99	42.535	Xenopus_tropicalis
ENSSDUG00000023566	si:dkey-85a20.4	84	73.728	ENSXCOG00000011779	si:dkey-85a20.4	99	73.728	Xiphophorus_couchianus
ENSSDUG00000023566	si:dkey-85a20.4	64	69.781	ENSXMAG00000009600	si:dkey-85a20.4	100	69.495	Xiphophorus_maculatus