EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000023597 (Gene tree)
Gene ID: 111239657
Gene Symbol: ddx56
Alias: noh61|zgc:110078
Full Name: DEAD-box helicase 56
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5352 bases
Position: chrBDQW01003649.1:141545-146896
Accession: 111239657
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000032837	ResIII	PF04851.15	1.1e-07	1	1
ENSSDUP00000032836	ResIII	PF04851.15	1.7e-07	1	1
ENSSDUP00000032836	DEAD	PF00270.29	5.6e-40	1	1
ENSSDUP00000032837	DEAD	PF00270.29	6.3e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000033398	-	1914	XM_022769548	ENSSDUP00000032836	562 (aa)	XP_022625269	UPI000BBE4C20
ENSSDUT00000033399	-	1551	-	ENSSDUP00000032837	516 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000023597's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000023597's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000023597	ddx56	69	30.653	ENSSDUG00000005957	ddx18	53	30.653
ENSSDUG00000023597	ddx56	74	31.172	ENSSDUG00000004022	ddx52	54	31.458
ENSSDUG00000023597	ddx56	71	30.488	ENSSDUG00000009696	ddx49	74	30.488
ENSSDUG00000023597	ddx56	76	32.274	ENSSDUG00000018855	ddx27	53	32.381
ENSSDUG00000023597	ddx56	78	31.100	ENSSDUG00000018110	ddx47	72	31.100

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000023597	ddx56	98	64.991	ENSG00000136271	DDX56	98	69.613	Homo_sapiens
ENSSDUG00000023597	ddx56	100	92.527	ENSAPOG00000017113	ddx56	100	92.349	Acanthochromis_polyacanthus
ENSSDUG00000023597	ddx56	99	64.043	ENSAMEG00000017711	DDX56	99	63.327	Ailuropoda_melanoleuca
ENSSDUG00000023597	ddx56	95	76.536	ENSACIG00000013747	ddx56	99	87.432	Amphilophus_citrinellus
ENSSDUG00000023597	ddx56	87	92.608	ENSAOCG00000015447	-	87	92.608	Amphiprion_ocellaris
ENSSDUG00000023597	ddx56	89	92.800	ENSAOCG00000018059	ddx56	94	92.800	Amphiprion_ocellaris
ENSSDUG00000023597	ddx56	100	90.925	ENSAPEG00000007267	ddx56	100	90.391	Amphiprion_percula
ENSSDUG00000023597	ddx56	99	88.770	ENSATEG00000005279	ddx56	100	88.592	Anabas_testudineus
ENSSDUG00000023597	ddx56	100	86.655	ENSACLG00000020113	ddx56	100	86.299	Astatotilapia_calliptera
ENSSDUG00000023597	ddx56	99	77.419	ENSAMXG00000019357	ddx56	99	77.061	Astyanax_mexicanus
ENSSDUG00000023597	ddx56	99	64.758	ENSBTAG00000010602	DDX56	99	63.864	Bos_taurus
ENSSDUG00000023597	ddx56	96	40.541	WBGene00016073	C24H12.4	86	40.000	Caenorhabditis_elegans
ENSSDUG00000023597	ddx56	99	65.062	ENSCJAG00000012233	DDX56	99	63.815	Callithrix_jacchus
ENSSDUG00000023597	ddx56	81	61.220	ENSCAFG00000029295	DDX56	99	60.784	Canis_familiaris
ENSSDUG00000023597	ddx56	94	63.904	ENSCAFG00020019695	DDX56	99	61.717	Canis_lupus_dingo
ENSSDUG00000023597	ddx56	99	64.758	ENSCHIG00000014261	DDX56	99	64.401	Capra_hircus
ENSSDUG00000023597	ddx56	99	64.937	ENSTSYG00000008048	DDX56	99	64.401	Carlito_syrichta
ENSSDUG00000023597	ddx56	86	63.278	ENSCAPG00000006286	DDX56	98	62.656	Cavia_aperea
ENSSDUG00000023597	ddx56	99	64.758	ENSCPOG00000003359	DDX56	99	64.222	Cavia_porcellus
ENSSDUG00000023597	ddx56	99	64.043	ENSCCAG00000025303	DDX56	99	64.286	Cebus_capucinus
ENSSDUG00000023597	ddx56	98	63.964	ENSCATG00000039389	DDX56	98	63.555	Cercocebus_atys
ENSSDUG00000023597	ddx56	99	64.758	ENSCLAG00000007666	DDX56	99	63.148	Chinchilla_lanigera
ENSSDUG00000023597	ddx56	98	64.171	ENSCSAG00000015636	DDX56	98	63.555	Chlorocebus_sabaeus
ENSSDUG00000023597	ddx56	98	70.631	ENSCPBG00000024556	DDX56	97	69.910	Chrysemys_picta_bellii
ENSSDUG00000023597	ddx56	90	61.765	ENSCING00000005185	-	98	61.598	Ciona_intestinalis
ENSSDUG00000023597	ddx56	92	58.032	ENSCSAVG00000011266	-	99	60.714	Ciona_savignyi
ENSSDUG00000023597	ddx56	98	64.171	ENSCANG00000028187	DDX56	98	63.914	Colobus_angolensis_palliatus
ENSSDUG00000023597	ddx56	98	65.517	ENSCGRG00001019019	Ddx56	98	64.738	Cricetulus_griseus_chok1gshd
ENSSDUG00000023597	ddx56	98	65.517	ENSCGRG00000011870	Ddx56	98	64.738	Cricetulus_griseus_crigri
ENSSDUG00000023597	ddx56	100	85.409	ENSCSEG00000008368	ddx56	100	85.053	Cynoglossus_semilaevis
ENSSDUG00000023597	ddx56	100	84.698	ENSCVAG00000006499	ddx56	100	84.520	Cyprinodon_variegatus
ENSSDUG00000023597	ddx56	99	80.036	ENSDARG00000020913	ddx56	99	79.857	Danio_rerio
ENSSDUG00000023597	ddx56	86	62.863	ENSDNOG00000036526	DDX56	97	62.397	Dasypus_novemcinctus
ENSSDUG00000023597	ddx56	99	50.714	FBgn0001565	Hlc	90	53.502	Drosophila_melanogaster
ENSSDUG00000023597	ddx56	64	79.710	ENSETEG00000002969	-	63	79.710	Echinops_telfairi
ENSSDUG00000023597	ddx56	88	44.420	ENSETEG00000019559	-	99	44.792	Echinops_telfairi
ENSSDUG00000023597	ddx56	98	65.946	ENSEBUG00000009986	ddx56	99	65.946	Eptatretus_burgeri
ENSSDUG00000023597	ddx56	90	67.387	ENSEASG00005017795	DDX56	98	63.423	Equus_asinus_asinus
ENSSDUG00000023597	ddx56	90	67.191	ENSECAG00000019897	DDX56	98	63.243	Equus_caballus
ENSSDUG00000023597	ddx56	80	66.000	ENSEEUG00000004849	DDX56	91	66.972	Erinaceus_europaeus
ENSSDUG00000023597	ddx56	100	84.342	ENSELUG00000004150	ddx56	100	83.630	Esox_lucius
ENSSDUG00000023597	ddx56	99	64.043	ENSFCAG00000010261	DDX56	99	63.327	Felis_catus
ENSSDUG00000023597	ddx56	99	64.580	ENSFDAG00000007128	DDX56	99	63.523	Fukomys_damarensis
ENSSDUG00000023597	ddx56	100	82.060	ENSFHEG00000018008	ddx56	96	88.400	Fundulus_heteroclitus
ENSSDUG00000023597	ddx56	100	76.199	ENSGAFG00000006906	ddx56	99	75.488	Gambusia_affinis
ENSSDUG00000023597	ddx56	97	69.801	ENSGAGG00000006789	DDX56	89	73.425	Gopherus_agassizii
ENSSDUG00000023597	ddx56	98	64.991	ENSGGOG00000012031	DDX56	98	63.734	Gorilla_gorilla
ENSSDUG00000023597	ddx56	95	81.869	ENSHBUG00000015246	ddx56	96	81.495	Haplochromis_burtoni
ENSSDUG00000023597	ddx56	99	64.043	ENSHGLG00000017271	DDX56	99	62.791	Heterocephalus_glaber_female
ENSSDUG00000023597	ddx56	99	64.043	ENSHGLG00100015731	DDX56	99	62.791	Heterocephalus_glaber_male
ENSSDUG00000023597	ddx56	100	83.481	ENSHCOG00000001685	ddx56	100	82.416	Hippocampus_comes
ENSSDUG00000023597	ddx56	98	78.221	ENSIPUG00000006602	ddx56	96	77.858	Ictalurus_punctatus
ENSSDUG00000023597	ddx56	99	64.937	ENSSTOG00000000464	DDX56	99	63.685	Ictidomys_tridecemlineatus
ENSSDUG00000023597	ddx56	98	64.324	ENSJJAG00000014269	Ddx56	99	63.964	Jaculus_jaculus
ENSSDUG00000023597	ddx56	99	85.027	ENSKMAG00000016611	ddx56	99	84.135	Kryptolebias_marmoratus
ENSSDUG00000023597	ddx56	99	90.340	ENSLBEG00000026281	ddx56	100	90.340	Labrus_bergylta
ENSSDUG00000023597	ddx56	99	72.352	ENSLACG00000015551	DDX56	97	72.172	Latimeria_chalumnae
ENSSDUG00000023597	ddx56	100	77.915	ENSLOCG00000015185	ddx56	100	77.168	Lepisosteus_oculatus
ENSSDUG00000023597	ddx56	99	65.179	ENSLAFG00000018206	DDX56	99	64.107	Loxodonta_africana
ENSSDUG00000023597	ddx56	98	63.964	ENSMFAG00000041001	DDX56	98	63.375	Macaca_fascicularis
ENSSDUG00000023597	ddx56	98	63.964	ENSMMUG00000002645	DDX56	98	63.375	Macaca_mulatta
ENSSDUG00000023597	ddx56	98	63.964	ENSMNEG00000028492	DDX56	98	63.375	Macaca_nemestrina
ENSSDUG00000023597	ddx56	98	64.324	ENSMLEG00000043591	DDX56	98	63.423	Mandrillus_leucophaeus
ENSSDUG00000023597	ddx56	100	90.036	ENSMAMG00000007776	ddx56	100	89.324	Mastacembelus_armatus
ENSSDUG00000023597	ddx56	100	86.655	ENSMZEG00005009813	ddx56	100	86.299	Maylandia_zebra
ENSSDUG00000023597	ddx56	98	65.225	ENSMICG00000005550	DDX56	99	64.273	Microcebus_murinus
ENSSDUG00000023597	ddx56	98	63.423	ENSMOCG00000016782	Ddx56	98	62.523	Microtus_ochrogaster
ENSSDUG00000023597	ddx56	100	82.979	ENSMMOG00000009654	ddx56	100	83.156	Mola_mola
ENSSDUG00000023597	ddx56	99	59.821	ENSMODG00000016137	DDX56	98	58.750	Monodelphis_domestica
ENSSDUG00000023597	ddx56	67	80.990	ENSMALG00000016910	ddx56	99	80.990	Monopterus_albus
ENSSDUG00000023597	ddx56	98	62.883	MGP_CAROLIEiJ_G0016069	Ddx56	98	67.339	Mus_caroli
ENSSDUG00000023597	ddx56	98	63.784	ENSMUSG00000004393	Ddx56	98	67.742	Mus_musculus
ENSSDUG00000023597	ddx56	98	63.604	MGP_PahariEiJ_G0016822	Ddx56	98	67.339	Mus_pahari
ENSSDUG00000023597	ddx56	98	63.784	MGP_SPRETEiJ_G0016911	Ddx56	98	67.742	Mus_spretus
ENSSDUG00000023597	ddx56	99	64.222	ENSMPUG00000018196	DDX56	87	63.506	Mustela_putorius_furo
ENSSDUG00000023597	ddx56	98	63.489	ENSMLUG00000003509	DDX56	98	62.770	Myotis_lucifugus
ENSSDUG00000023597	ddx56	98	65.225	ENSNGAG00000018785	Ddx56	98	63.784	Nannospalax_galili
ENSSDUG00000023597	ddx56	95	81.495	ENSNBRG00000002656	ddx56	96	81.308	Neolamprologus_brichardi
ENSSDUG00000023597	ddx56	98	64.811	ENSNLEG00000003816	DDX56	98	63.555	Nomascus_leucogenys
ENSSDUG00000023597	ddx56	89	61.706	ENSMEUG00000006788	DDX56	100	61.111	Notamacropus_eugenii
ENSSDUG00000023597	ddx56	98	62.883	ENSOPRG00000000292	-	98	62.342	Ochotona_princeps
ENSSDUG00000023597	ddx56	67	67.363	ENSODEG00000014807	DDX56	100	66.841	Octodon_degus
ENSSDUG00000023597	ddx56	100	83.452	ENSONIG00000011509	ddx56	99	82.740	Oreochromis_niloticus
ENSSDUG00000023597	ddx56	96	56.777	ENSOANG00000006320	-	80	73.401	Ornithorhynchus_anatinus
ENSSDUG00000023597	ddx56	72	56.341	ENSOANG00000015987	-	94	56.341	Ornithorhynchus_anatinus
ENSSDUG00000023597	ddx56	99	63.864	ENSOCUG00000022918	DDX56	99	63.815	Oryctolagus_cuniculus
ENSSDUG00000023597	ddx56	100	85.053	ENSORLG00000001434	ddx56	100	84.875	Oryzias_latipes
ENSSDUG00000023597	ddx56	100	84.698	ENSORLG00020015718	ddx56	97	84.520	Oryzias_latipes_hni
ENSSDUG00000023597	ddx56	99	85.027	ENSORLG00015003004	ddx56	96	84.848	Oryzias_latipes_hsok
ENSSDUG00000023597	ddx56	100	85.587	ENSOMEG00000022072	ddx56	99	85.409	Oryzias_melastigma
ENSSDUG00000023597	ddx56	99	64.884	ENSOGAG00000009981	DDX56	99	64.171	Otolemur_garnettii
ENSSDUG00000023597	ddx56	99	64.937	ENSOARG00000015240	DDX56	99	64.580	Ovis_aries
ENSSDUG00000023597	ddx56	98	62.367	ENSPPAG00000029147	DDX56	98	61.131	Pan_paniscus
ENSSDUG00000023597	ddx56	99	53.654	ENSPPAG00000031263	-	99	52.931	Pan_paniscus
ENSSDUG00000023597	ddx56	99	64.043	ENSPPRG00000014594	DDX56	99	64.043	Panthera_pardus
ENSSDUG00000023597	ddx56	95	56.691	ENSPTIG00000019500	DDX56	98	56.691	Panthera_tigris_altaica
ENSSDUG00000023597	ddx56	98	64.991	ENSPTRG00000019147	DDX56	98	63.734	Pan_troglodytes
ENSSDUG00000023597	ddx56	93	52.642	ENSPTRG00000052765	-	99	53.383	Pan_troglodytes
ENSSDUG00000023597	ddx56	98	63.929	ENSPANG00000002446	DDX56	98	63.375	Papio_anubis
ENSSDUG00000023597	ddx56	99	79.174	ENSPKIG00000018998	ddx56	99	78.097	Paramormyrops_kingsleyae
ENSSDUG00000023597	ddx56	95	84.673	ENSPMGG00000017421	ddx56	99	83.925	Periophthalmus_magnuspinnatus
ENSSDUG00000023597	ddx56	99	66.607	ENSPCIG00000009336	DDX56	98	65.530	Phascolarctos_cinereus
ENSSDUG00000023597	ddx56	100	83.808	ENSPFOG00000018658	ddx56	100	84.520	Poecilia_formosa
ENSSDUG00000023597	ddx56	100	83.986	ENSPLAG00000019208	ddx56	100	84.698	Poecilia_latipinna
ENSSDUG00000023597	ddx56	100	83.986	ENSPMEG00000001775	ddx56	100	84.520	Poecilia_mexicana
ENSSDUG00000023597	ddx56	100	84.342	ENSPREG00000015142	ddx56	100	84.342	Poecilia_reticulata
ENSSDUG00000023597	ddx56	98	64.991	ENSPPYG00000017591	DDX56	98	63.734	Pongo_abelii
ENSSDUG00000023597	ddx56	95	65.804	ENSPCAG00000011499	DDX56	99	64.325	Procavia_capensis
ENSSDUG00000023597	ddx56	99	64.937	ENSPCOG00000024864	DDX56	99	64.222	Propithecus_coquereli
ENSSDUG00000023597	ddx56	89	70.233	ENSPVAG00000000791	DDX56	88	70.233	Pteropus_vampyrus
ENSSDUG00000023597	ddx56	100	86.477	ENSPNYG00000019212	ddx56	100	86.121	Pundamilia_nyererei
ENSSDUG00000023597	ddx56	99	80.790	ENSPNAG00000025446	ddx56	99	80.790	Pygocentrus_nattereri
ENSSDUG00000023597	ddx56	98	63.604	ENSRNOG00000004670	Ddx56	98	62.883	Rattus_norvegicus
ENSSDUG00000023597	ddx56	98	64.171	ENSRBIG00000030140	DDX56	98	63.555	Rhinopithecus_bieti
ENSSDUG00000023597	ddx56	98	63.993	ENSRROG00000044428	DDX56	98	63.375	Rhinopithecus_roxellana
ENSSDUG00000023597	ddx56	97	43.266	YLR276C	-	91	45.956	Saccharomyces_cerevisiae
ENSSDUG00000023597	ddx56	99	64.528	ENSSBOG00000034339	DDX56	99	63.280	Saimiri_boliviensis_boliviensis
ENSSDUG00000023597	ddx56	85	66.667	ENSSHAG00000016615	DDX56	99	64.066	Sarcophilus_harrisii
ENSSDUG00000023597	ddx56	100	78.014	ENSSFOG00015012795	ddx56	100	77.660	Scleropages_formosus
ENSSDUG00000023597	ddx56	100	90.586	ENSSMAG00000011280	ddx56	99	92.164	Scophthalmus_maximus
ENSSDUG00000023597	ddx56	100	99.466	ENSSLDG00000018369	ddx56	100	99.466	Seriola_lalandi_dorsalis
ENSSDUG00000023597	ddx56	69	77.966	ENSSARG00000014363	DDX56	78	72.857	Sorex_araneus
ENSSDUG00000023597	ddx56	99	69.751	ENSSPUG00000000784	DDX56	96	69.395	Sphenodon_punctatus
ENSSDUG00000023597	ddx56	95	91.776	ENSSPAG00000009392	ddx56	99	91.589	Stegastes_partitus
ENSSDUG00000023597	ddx56	98	64.324	ENSSSCG00000016745	DDX56	99	64.505	Sus_scrofa
ENSSDUG00000023597	ddx56	100	86.726	ENSTRUG00000018623	ddx56	100	85.866	Takifugu_rubripes
ENSSDUG00000023597	ddx56	99	85.689	ENSTNIG00000013593	ddx56	100	85.689	Tetraodon_nigroviridis
ENSSDUG00000023597	ddx56	98	64.324	ENSTBEG00000007119	DDX56	98	63.784	Tupaia_belangeri
ENSSDUG00000023597	ddx56	84	63.291	ENSTTRG00000010552	DDX56	96	63.291	Tursiops_truncatus
ENSSDUG00000023597	ddx56	99	64.222	ENSUAMG00000014194	DDX56	99	63.506	Ursus_americanus
ENSSDUG00000023597	ddx56	99	64.222	ENSUMAG00000009666	DDX56	99	63.506	Ursus_maritimus
ENSSDUG00000023597	ddx56	99	63.327	ENSVVUG00000011905	DDX56	99	62.970	Vulpes_vulpes
ENSSDUG00000023597	ddx56	98	71.841	ENSXETG00000019000	ddx56	99	71.892	Xenopus_tropicalis
ENSSDUG00000023597	ddx56	100	78.826	ENSXCOG00000017413	ddx56	99	78.826	Xiphophorus_couchianus
ENSSDUG00000023597	ddx56	100	84.520	ENSXMAG00000018749	ddx56	100	84.520	Xiphophorus_maculatus