EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000023631 (Gene tree)
Gene ID: 111239703
Gene Symbol: rbck1
Alias: zgc:91964
Full Name: RANBP2-type and C3HC4-type zinc finger containing 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7298 bases
Position: chrBDQW01004171.1:439566-446863
Accession: 111239703
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000032892	zf-RanBP	PF00641.18	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000033454	-	3622	XM_022769595	ENSSDUP00000032892	525 (aa)	XP_022625316	UPI000BBF08A1

Gene Model

Click here to download ENSSDUG00000023631's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04217	Necroptosis	KEGG
sdu04621	NOD-like receptor signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000023631's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000023631	rbck1	99	45.138	ENSSDUG00000002959	shrprbck1r	76	45.856

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000023631	rbck1	100	81.939	ENSACLG00000020380	rbck1	100	81.714	Astatotilapia_calliptera
ENSSDUG00000023631	rbck1	98	58.077	ENSAMXG00000004941	rbck1	98	57.306	Astyanax_mexicanus
ENSSDUG00000023631	rbck1	100	76.806	ENSCVAG00000002649	rbck1	100	76.426	Cyprinodon_variegatus
ENSSDUG00000023631	rbck1	99	63.757	ENSELUG00000022786	rbck1	98	62.949	Esox_lucius
ENSSDUG00000023631	rbck1	100	76.616	ENSFHEG00000016918	rbck1	100	76.236	Fundulus_heteroclitus
ENSSDUG00000023631	rbck1	100	81.939	ENSHBUG00000008208	rbck1	100	81.714	Haplochromis_burtoni
ENSSDUG00000023631	rbck1	100	81.939	ENSMZEG00005005317	rbck1	100	81.714	Maylandia_zebra
ENSSDUG00000023631	rbck1	84	78.458	ENSNBRG00000006179	rbck1	90	78.182	Neolamprologus_brichardi
ENSSDUG00000023631	rbck1	98	82.101	ENSONIG00000006803	rbck1	99	81.871	Oreochromis_niloticus
ENSSDUG00000023631	rbck1	99	81.034	ENSPNYG00000012666	rbck1	99	80.806	Pundamilia_nyererei
ENSSDUG00000023631	rbck1	100	99.429	ENSSLDG00000008305	rbck1	100	99.429	Seriola_lalandi_dorsalis
ENSSDUG00000023631	rbck1	99	83.269	ENSSPAG00000009432	rbck1	99	83.269	Stegastes_partitus