EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000023789 (Gene tree)
Gene ID: 111239869
Gene Symbol: mtrex
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 26606 bases
Position: chrBDQW01005691.1:225918-252523
Accession: 111239869
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000033120	rRNA_proc-arch	PF13234.6	1.4e-87	1	1
ENSSDUP00000033119	rRNA_proc-arch	PF13234.6	1.4e-87	1	1
ENSSDUP00000033120	DEAD	PF00270.29	1.3e-16	1	1
ENSSDUP00000033119	DEAD	PF00270.29	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000033683	-	5728	XM_022769790	ENSSDUP00000033119	1037 (aa)	XP_022625511	UPI000BBE5C8F
ENSSDUT00000033684	-	3033	-	ENSSDUP00000033120	1010 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000023789's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000023789's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000023789	mtrex	92	35.501	ENSSDUG00000019977	skiv2l	79	35.487

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000023789	mtrex	100	83.492	ENSG00000039123	MTREX	100	83.492	Homo_sapiens
ENSSDUG00000023789	mtrex	100	95.371	ENSAPOG00000007814	mtrex	100	95.371	Acanthochromis_polyacanthus
ENSSDUG00000023789	mtrex	100	83.603	ENSAMEG00000013856	MTREX	100	83.603	Ailuropoda_melanoleuca
ENSSDUG00000023789	mtrex	100	93.663	ENSACIG00000015117	mtrex	100	93.465	Amphilophus_citrinellus
ENSSDUG00000023789	mtrex	100	95.371	ENSAOCG00000011884	mtrex	100	95.371	Amphiprion_ocellaris
ENSSDUG00000023789	mtrex	100	95.468	ENSAPEG00000019384	mtrex	100	95.468	Amphiprion_percula
ENSSDUG00000023789	mtrex	100	96.721	ENSATEG00000015117	mtrex	100	96.721	Anabas_testudineus
ENSSDUG00000023789	mtrex	95	87.265	ENSAPLG00000009694	MTREX	98	86.415	Anas_platyrhynchos
ENSSDUG00000023789	mtrex	100	84.226	ENSACAG00000015200	MTREX	96	84.226	Anolis_carolinensis
ENSSDUG00000023789	mtrex	100	83.779	ENSANAG00000023095	MTREX	100	83.779	Aotus_nancymaae
ENSSDUG00000023789	mtrex	100	95.371	ENSACLG00000001921	mtrex	100	95.371	Astatotilapia_calliptera
ENSSDUG00000023789	mtrex	95	87.449	ENSAMXG00000018751	mtrex	99	87.449	Astyanax_mexicanus
ENSSDUG00000023789	mtrex	100	83.843	ENSBTAG00000010518	MTREX	100	83.843	Bos_taurus
ENSSDUG00000023789	mtrex	93	53.928	WBGene00012342	mtr-4	96	52.218	Caenorhabditis_elegans
ENSSDUG00000023789	mtrex	100	83.112	ENSCJAG00000001773	MTREX	100	82.955	Callithrix_jacchus
ENSSDUG00000023789	mtrex	100	83.779	ENSCAFG00000006818	MTREX	100	83.779	Canis_familiaris
ENSSDUG00000023789	mtrex	100	83.779	ENSCAFG00020024352	MTREX	100	83.779	Canis_lupus_dingo
ENSSDUG00000023789	mtrex	100	83.683	ENSCHIG00000024413	MTREX	100	83.683	Capra_hircus
ENSSDUG00000023789	mtrex	93	85.099	ENSTSYG00000007389	MTREX	100	85.099	Carlito_syrichta
ENSSDUG00000023789	mtrex	87	76.712	ENSCAPG00000008696	MTREX	92	76.484	Cavia_aperea
ENSSDUG00000023789	mtrex	100	83.619	ENSCPOG00000009797	MTREX	100	83.619	Cavia_porcellus
ENSSDUG00000023789	mtrex	100	83.683	ENSCCAG00000014177	MTREX	100	83.683	Cebus_capucinus
ENSSDUG00000023789	mtrex	100	83.492	ENSCATG00000042153	MTREX	100	83.779	Cercocebus_atys
ENSSDUG00000023789	mtrex	100	83.683	ENSCLAG00000006622	MTREX	100	83.683	Chinchilla_lanigera
ENSSDUG00000023789	mtrex	100	79.734	ENSCSAG00000016445	MTREX	100	79.962	Chlorocebus_sabaeus
ENSSDUG00000023789	mtrex	69	97.222	ENSCHOG00000010936	-	70	97.222	Choloepus_hoffmanni
ENSSDUG00000023789	mtrex	100	84.054	ENSCPBG00000026551	MTREX	94	84.357	Chrysemys_picta_bellii
ENSSDUG00000023789	mtrex	99	65.201	ENSCING00000003239	-	99	65.201	Ciona_intestinalis
ENSSDUG00000023789	mtrex	95	68.328	ENSCSAVG00000009304	-	100	69.239	Ciona_savignyi
ENSSDUG00000023789	mtrex	100	83.619	ENSCANG00000035770	MTREX	100	83.683	Colobus_angolensis_palliatus
ENSSDUG00000023789	mtrex	100	83.763	ENSCGRG00001024680	Mtrex	100	83.763	Cricetulus_griseus_chok1gshd
ENSSDUG00000023789	mtrex	100	83.763	ENSCGRG00000000307	Mtrex	100	83.763	Cricetulus_griseus_crigri
ENSSDUG00000023789	mtrex	100	93.828	ENSCSEG00000018621	mtrex	98	94.214	Cynoglossus_semilaevis
ENSSDUG00000023789	mtrex	100	93.635	ENSCVAG00000004556	mtrex	100	93.635	Cyprinodon_variegatus
ENSSDUG00000023789	mtrex	100	86.885	ENSDARG00000013457	mtrex	100	86.885	Danio_rerio
ENSSDUG00000023789	mtrex	100	83.555	ENSDNOG00000015375	MTREX	100	83.555	Dasypus_novemcinctus
ENSSDUG00000023789	mtrex	100	83.588	ENSDORG00000006782	Mtrex	100	83.683	Dipodomys_ordii
ENSSDUG00000023789	mtrex	98	63.122	FBgn0001986	Mtr4	96	63.024	Drosophila_melanogaster
ENSSDUG00000023789	mtrex	90	67.671	ENSETEG00000000727	MTREX	90	67.671	Echinops_telfairi
ENSSDUG00000023789	mtrex	99	72.850	ENSEBUG00000012869	mtrex	99	72.850	Eptatretus_burgeri
ENSSDUG00000023789	mtrex	100	83.492	ENSEASG00005013270	MTREX	100	83.588	Equus_asinus_asinus
ENSSDUG00000023789	mtrex	100	83.588	ENSECAG00000023723	MTREX	100	89.767	Equus_caballus
ENSSDUG00000023789	mtrex	98	76.043	ENSEEUG00000000527	MTREX	100	75.946	Erinaceus_europaeus
ENSSDUG00000023789	mtrex	100	86.746	ENSELUG00000004898	mtrex	100	91.396	Esox_lucius
ENSSDUG00000023789	mtrex	100	83.874	ENSFCAG00000010575	MTREX	100	83.874	Felis_catus
ENSSDUG00000023789	mtrex	100	82.885	ENSFALG00000010850	MTREX	100	82.885	Ficedula_albicollis
ENSSDUG00000023789	mtrex	100	83.270	ENSFDAG00000011199	MTREX	100	83.365	Fukomys_damarensis
ENSSDUG00000023789	mtrex	100	93.539	ENSFHEG00000023014	mtrex	100	91.351	Fundulus_heteroclitus
ENSSDUG00000023789	mtrex	100	86.307	ENSGMOG00000014702	mtrex	100	86.385	Gadus_morhua
ENSSDUG00000023789	mtrex	100	83.734	ENSGALG00000014709	MTREX	86	83.734	Gallus_gallus
ENSSDUG00000023789	mtrex	100	93.539	ENSGAFG00000012425	mtrex	100	93.539	Gambusia_affinis
ENSSDUG00000023789	mtrex	100	88.814	ENSGACG00000016260	mtrex	99	92.935	Gasterosteus_aculeatus
ENSSDUG00000023789	mtrex	100	83.781	ENSGAGG00000020036	MTREX	100	83.877	Gopherus_agassizii
ENSSDUG00000023789	mtrex	100	83.492	ENSGGOG00000001867	MTREX	100	83.492	Gorilla_gorilla
ENSSDUG00000023789	mtrex	100	95.371	ENSHBUG00000006229	mtrex	100	95.371	Haplochromis_burtoni
ENSSDUG00000023789	mtrex	100	83.461	ENSHGLG00000019445	SKIV2L2	100	83.461	Heterocephalus_glaber_female
ENSSDUG00000023789	mtrex	100	83.461	ENSHGLG00100011833	SKIV2L2	100	83.461	Heterocephalus_glaber_male
ENSSDUG00000023789	mtrex	94	91.845	ENSHCOG00000019995	mtrex	100	91.845	Hippocampus_comes
ENSSDUG00000023789	mtrex	100	86.237	ENSIPUG00000024348	skiv2l2	100	86.237	Ictalurus_punctatus
ENSSDUG00000023789	mtrex	100	83.492	ENSSTOG00000010802	MTREX	100	83.492	Ictidomys_tridecemlineatus
ENSSDUG00000023789	mtrex	100	78.963	ENSJJAG00000020975	Mtrex	100	78.963	Jaculus_jaculus
ENSSDUG00000023789	mtrex	100	94.600	ENSKMAG00000012642	mtrex	100	94.600	Kryptolebias_marmoratus
ENSSDUG00000023789	mtrex	100	95.757	ENSLBEG00000019367	mtrex	100	95.757	Labrus_bergylta
ENSSDUG00000023789	mtrex	100	84.822	ENSLACG00000009075	MTREX	100	84.822	Latimeria_chalumnae
ENSSDUG00000023789	mtrex	100	86.936	ENSLOCG00000010186	mtrex	100	86.936	Lepisosteus_oculatus
ENSSDUG00000023789	mtrex	95	85.610	ENSLAFG00000010497	MTREX	100	81.471	Loxodonta_africana
ENSSDUG00000023789	mtrex	100	83.492	ENSMFAG00000031610	MTREX	100	83.779	Macaca_fascicularis
ENSSDUG00000023789	mtrex	100	83.714	ENSMMUG00000010379	MTREX	100	83.714	Macaca_mulatta
ENSSDUG00000023789	mtrex	100	83.492	ENSMNEG00000032746	MTREX	100	83.779	Macaca_nemestrina
ENSSDUG00000023789	mtrex	100	83.492	ENSMLEG00000041051	MTREX	100	83.779	Mandrillus_leucophaeus
ENSSDUG00000023789	mtrex	100	95.743	ENSMAMG00000016753	mtrex	100	95.743	Mastacembelus_armatus
ENSSDUG00000023789	mtrex	100	95.371	ENSMZEG00005000414	mtrex	100	95.371	Maylandia_zebra
ENSSDUG00000023789	mtrex	94	63.427	ENSMGAG00000003980	MTREX	99	62.173	Meleagris_gallopavo
ENSSDUG00000023789	mtrex	100	83.668	ENSMAUG00000010727	Mtrex	100	83.668	Mesocricetus_auratus
ENSSDUG00000023789	mtrex	100	83.969	ENSMICG00000012779	MTREX	100	83.969	Microcebus_murinus
ENSSDUG00000023789	mtrex	100	83.492	ENSMOCG00000019886	Mtrex	100	83.429	Microtus_ochrogaster
ENSSDUG00000023789	mtrex	100	94.461	ENSMMOG00000002476	mtrex	100	94.461	Mola_mola
ENSSDUG00000023789	mtrex	100	83.927	ENSMODG00000019494	MTREX	100	83.927	Monodelphis_domestica
ENSSDUG00000023789	mtrex	100	87.938	ENSMALG00000002917	mtrex	99	90.918	Monopterus_albus
ENSSDUG00000023789	mtrex	100	83.461	MGP_CAROLIEiJ_G0018896	Mtrex	100	83.397	Mus_caroli
ENSSDUG00000023789	mtrex	100	83.365	ENSMUSG00000016018	Mtrex	100	83.302	Mus_musculus
ENSSDUG00000023789	mtrex	100	83.461	MGP_PahariEiJ_G0015967	Mtrex	100	83.397	Mus_pahari
ENSSDUG00000023789	mtrex	100	83.365	MGP_SPRETEiJ_G0019775	Mtrex	100	83.302	Mus_spretus
ENSSDUG00000023789	mtrex	100	83.779	ENSMPUG00000007619	MTREX	100	83.779	Mustela_putorius_furo
ENSSDUG00000023789	mtrex	100	83.031	ENSMLUG00000001152	MTREX	100	83.031	Myotis_lucifugus
ENSSDUG00000023789	mtrex	100	83.683	ENSNGAG00000011938	Mtrex	100	83.683	Nannospalax_galili
ENSSDUG00000023789	mtrex	100	95.178	ENSNBRG00000011293	mtrex	100	95.178	Neolamprologus_brichardi
ENSSDUG00000023789	mtrex	100	79.714	ENSNLEG00000001494	MTREX	100	79.714	Nomascus_leucogenys
ENSSDUG00000023789	mtrex	83	96.078	ENSMEUG00000006496	-	83	96.078	Notamacropus_eugenii
ENSSDUG00000023789	mtrex	100	70.718	ENSOPRG00000008009	MTREX	100	70.718	Ochotona_princeps
ENSSDUG00000023789	mtrex	100	82.920	ENSODEG00000017234	MTREX	100	82.920	Octodon_degus
ENSSDUG00000023789	mtrex	100	95.178	ENSONIG00000007587	mtrex	100	95.178	Oreochromis_niloticus
ENSSDUG00000023789	mtrex	51	83.172	ENSOANG00000004885	-	99	83.172	Ornithorhynchus_anatinus
ENSSDUG00000023789	mtrex	100	83.939	ENSOCUG00000004463	MTREX	100	83.939	Oryctolagus_cuniculus
ENSSDUG00000023789	mtrex	100	92.671	ENSORLG00000005443	mtrex	100	92.671	Oryzias_latipes
ENSSDUG00000023789	mtrex	100	92.671	ENSORLG00020006329	mtrex	100	92.671	Oryzias_latipes_hni
ENSSDUG00000023789	mtrex	100	92.671	ENSORLG00015012924	mtrex	100	92.671	Oryzias_latipes_hsok
ENSSDUG00000023789	mtrex	100	92.493	ENSOMEG00000008825	mtrex	100	92.493	Oryzias_melastigma
ENSSDUG00000023789	mtrex	100	83.588	ENSOGAG00000002886	MTREX	100	83.619	Otolemur_garnettii
ENSSDUG00000023789	mtrex	100	83.444	ENSOARG00000007764	MTREX	100	83.444	Ovis_aries
ENSSDUG00000023789	mtrex	100	83.492	ENSPPAG00000039291	MTREX	100	83.492	Pan_paniscus
ENSSDUG00000023789	mtrex	100	83.874	ENSPPRG00000019701	MTREX	100	83.874	Panthera_pardus
ENSSDUG00000023789	mtrex	100	82.538	ENSPTIG00000009313	MTREX	100	82.538	Panthera_tigris_altaica
ENSSDUG00000023789	mtrex	100	83.492	ENSPTRG00000016878	MTREX	100	83.492	Pan_troglodytes
ENSSDUG00000023789	mtrex	100	83.397	ENSPANG00000009697	MTREX	100	83.683	Papio_anubis
ENSSDUG00000023789	mtrex	100	87.103	ENSPKIG00000020833	mtrex	100	87.103	Paramormyrops_kingsleyae
ENSSDUG00000023789	mtrex	100	84.135	ENSPSIG00000012150	MTREX	100	84.261	Pelodiscus_sinensis
ENSSDUG00000023789	mtrex	100	92.087	ENSPMGG00000002582	mtrex	100	92.087	Periophthalmus_magnuspinnatus
ENSSDUG00000023789	mtrex	95	65.388	ENSPMAG00000009668	mtrex	100	65.388	Petromyzon_marinus
ENSSDUG00000023789	mtrex	94	87.828	ENSPCIG00000024730	MTREX	100	87.828	Phascolarctos_cinereus
ENSSDUG00000023789	mtrex	78	95.305	ENSPFOG00000003141	mtrex	100	95.305	Poecilia_formosa
ENSSDUG00000023789	mtrex	100	93.828	ENSPLAG00000021311	mtrex	100	93.828	Poecilia_latipinna
ENSSDUG00000023789	mtrex	95	94.167	ENSPMEG00000010597	mtrex	99	94.167	Poecilia_mexicana
ENSSDUG00000023789	mtrex	100	93.635	ENSPREG00000003089	mtrex	100	93.635	Poecilia_reticulata
ENSSDUG00000023789	mtrex	98	83.220	ENSPPYG00000015469	MTREX	98	83.220	Pongo_abelii
ENSSDUG00000023789	mtrex	94	74.419	ENSPCAG00000013120	MTREX	94	74.419	Procavia_capensis
ENSSDUG00000023789	mtrex	99	78.115	ENSPCOG00000018092	MTREX	100	78.115	Propithecus_coquereli
ENSSDUG00000023789	mtrex	100	83.683	ENSPVAG00000002445	MTREX	100	83.683	Pteropus_vampyrus
ENSSDUG00000023789	mtrex	100	95.275	ENSPNYG00000006164	mtrex	100	95.275	Pundamilia_nyererei
ENSSDUG00000023789	mtrex	100	87.584	ENSPNAG00000008794	mtrex	100	87.873	Pygocentrus_nattereri
ENSSDUG00000023789	mtrex	99	82.899	ENSRNOG00000010125	Mtrex	97	82.899	Rattus_norvegicus
ENSSDUG00000023789	mtrex	100	81.679	ENSRBIG00000034930	MTREX	100	81.905	Rhinopithecus_bieti
ENSSDUG00000023789	mtrex	100	83.397	ENSRROG00000039895	MTREX	100	83.683	Rhinopithecus_roxellana
ENSSDUG00000023789	mtrex	93	56.042	YJL050W	MTR4	92	54.518	Saccharomyces_cerevisiae
ENSSDUG00000023789	mtrex	100	83.779	ENSSBOG00000026693	MTREX	100	83.779	Saimiri_boliviensis_boliviensis
ENSSDUG00000023789	mtrex	96	87.280	ENSSHAG00000004600	MTREX	100	85.244	Sarcophilus_harrisii
ENSSDUG00000023789	mtrex	100	88.162	ENSSFOG00015014355	skiv2l2	100	88.065	Scleropages_formosus
ENSSDUG00000023789	mtrex	100	95.661	ENSSMAG00000007572	mtrex	100	95.661	Scophthalmus_maximus
ENSSDUG00000023789	mtrex	100	99.807	ENSSLDG00000006301	mtrex	100	99.807	Seriola_lalandi_dorsalis
ENSSDUG00000023789	mtrex	95	87.774	ENSSARG00000008387	MTREX	100	81.380	Sorex_araneus
ENSSDUG00000023789	mtrex	89	85.572	ENSSPUG00000007071	MTREX	96	85.572	Sphenodon_punctatus
ENSSDUG00000023789	mtrex	100	92.195	ENSSPAG00000011319	mtrex	100	92.293	Stegastes_partitus
ENSSDUG00000023789	mtrex	100	83.683	ENSSSCG00000016911	MTREX	100	83.683	Sus_scrofa
ENSSDUG00000023789	mtrex	100	82.421	ENSTGUG00000002480	MTREX	100	82.421	Taeniopygia_guttata
ENSSDUG00000023789	mtrex	100	92.671	ENSTRUG00000014571	mtrex	100	92.671	Takifugu_rubripes
ENSSDUG00000023789	mtrex	100	69.179	ENSTBEG00000007769	MTREX	100	69.143	Tupaia_belangeri
ENSSDUG00000023789	mtrex	100	83.556	ENSTTRG00000008678	MTREX	100	83.556	Tursiops_truncatus
ENSSDUG00000023789	mtrex	100	83.588	ENSUAMG00000023061	MTREX	100	83.588	Ursus_americanus
ENSSDUG00000023789	mtrex	100	83.174	ENSUMAG00000009373	MTREX	99	88.699	Ursus_maritimus
ENSSDUG00000023789	mtrex	100	73.913	ENSVPAG00000011174	MTREX	100	73.913	Vicugna_pacos
ENSSDUG00000023789	mtrex	100	83.874	ENSVVUG00000021337	MTREX	100	83.874	Vulpes_vulpes
ENSSDUG00000023789	mtrex	100	85.178	ENSXETG00000032798	MTREX	100	85.178	Xenopus_tropicalis
ENSSDUG00000023789	mtrex	100	94.021	ENSXMAG00000004799	mtrex	100	94.021	Xiphophorus_maculatus