EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015000628 (Gene tree)
Gene ID: 108935929
Gene Symbol: clp1
Alias: fa28a12|wu:fa28a12
Full Name: cleavage and polyadenylation factor I subunit 1
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 9224 bases
Position: chrKV411110.1:135980-145203
Accession: 108935929
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015000845	Clp1	PF06807.14	2.2e-29	1	1
ENSSFOP00015000854	Clp1	PF06807.14	2.3e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015000872	-	1326	-	ENSSFOP00015000845	441 (aa)	-	-
ENSSFOT00015000882	-	3467	XM_018754921	ENSSFOP00015000854	450 (aa)	XP_018610437	A0A0P7VE50

Gene Model

Click here to download ENSSFOG00015000628's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015000628's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015000628	clp1	96	79.294	ENSG00000172409	CLP1	97	79.294	Homo_sapiens
ENSSFOG00015000628	clp1	100	84.989	ENSAPOG00000008242	clp1	100	84.547	Acanthochromis_polyacanthus
ENSSFOG00015000628	clp1	96	79.059	ENSAMEG00000014551	CLP1	95	79.059	Ailuropoda_melanoleuca
ENSSFOG00015000628	clp1	100	84.547	ENSACIG00000006310	clp1	99	83.885	Amphilophus_citrinellus
ENSSFOG00015000628	clp1	99	86.005	ENSAOCG00000010681	clp1	98	88.084	Amphiprion_ocellaris
ENSSFOG00015000628	clp1	99	86.005	ENSAPEG00000012165	clp1	98	88.084	Amphiprion_percula
ENSSFOG00015000628	clp1	100	84.547	ENSATEG00000012374	clp1	100	84.547	Anabas_testudineus
ENSSFOG00015000628	clp1	99	77.117	ENSACAG00000007139	CLP1	97	78.824	Anolis_carolinensis
ENSSFOG00015000628	clp1	96	79.294	ENSANAG00000034935	CLP1	97	79.294	Aotus_nancymaae
ENSSFOG00015000628	clp1	100	84.768	ENSACLG00000013573	clp1	100	83.885	Astatotilapia_calliptera
ENSSFOG00015000628	clp1	100	87.111	ENSAMXG00000014194	clp1	100	87.111	Astyanax_mexicanus
ENSSFOG00015000628	clp1	96	79.059	ENSBTAG00000006493	CLP1	97	79.059	Bos_taurus
ENSSFOG00015000628	clp1	96	46.495	WBGene00010304	clpf-1	97	46.495	Caenorhabditis_elegans
ENSSFOG00015000628	clp1	96	79.294	ENSCJAG00000008748	CLP1	97	79.294	Callithrix_jacchus
ENSSFOG00015000628	clp1	96	79.059	ENSCAFG00000007815	CLP1	97	79.059	Canis_familiaris
ENSSFOG00015000628	clp1	96	79.059	ENSCAFG00020000903	CLP1	97	79.059	Canis_lupus_dingo
ENSSFOG00015000628	clp1	96	79.294	ENSCHIG00000023497	CLP1	97	79.294	Capra_hircus
ENSSFOG00015000628	clp1	99	77.252	ENSTSYG00000006824	CLP1	96	79.294	Carlito_syrichta
ENSSFOG00015000628	clp1	96	79.294	ENSCAPG00000009703	CLP1	97	79.294	Cavia_aperea
ENSSFOG00015000628	clp1	96	79.294	ENSCPOG00000012554	CLP1	99	79.294	Cavia_porcellus
ENSSFOG00015000628	clp1	96	79.294	ENSCCAG00000031957	CLP1	97	79.294	Cebus_capucinus
ENSSFOG00015000628	clp1	96	79.294	ENSCATG00000044628	CLP1	97	79.294	Cercocebus_atys
ENSSFOG00015000628	clp1	96	79.294	ENSCLAG00000004094	CLP1	97	79.294	Chinchilla_lanigera
ENSSFOG00015000628	clp1	96	79.294	ENSCSAG00000005994	CLP1	97	79.294	Chlorocebus_sabaeus
ENSSFOG00015000628	clp1	98	77.650	ENSCPBG00000016843	CLP1	97	78.824	Chrysemys_picta_bellii
ENSSFOG00015000628	clp1	96	62.028	ENSCING00000003779	-	96	62.028	Ciona_intestinalis
ENSSFOG00015000628	clp1	96	62.648	ENSCSAVG00000003437	-	96	62.648	Ciona_savignyi
ENSSFOG00015000628	clp1	96	79.294	ENSCANG00000034335	CLP1	97	79.294	Colobus_angolensis_palliatus
ENSSFOG00015000628	clp1	96	78.824	ENSCGRG00001002227	CLP1	97	78.824	Cricetulus_griseus_chok1gshd
ENSSFOG00015000628	clp1	96	78.824	ENSCGRG00000004328	CLP1	97	78.824	Cricetulus_griseus_crigri
ENSSFOG00015000628	clp1	100	82.119	ENSCSEG00000008614	clp1	100	82.119	Cynoglossus_semilaevis
ENSSFOG00015000628	clp1	99	85.261	ENSCVAG00000020101	clp1	100	84.106	Cyprinodon_variegatus
ENSSFOG00015000628	clp1	100	87.556	ENSDARG00000063663	clp1	100	87.556	Danio_rerio
ENSSFOG00015000628	clp1	96	78.774	ENSDNOG00000042415	CLP1	87	78.774	Dasypus_novemcinctus
ENSSFOG00015000628	clp1	96	79.059	ENSDORG00000014685	Clp1	97	79.059	Dipodomys_ordii
ENSSFOG00015000628	clp1	96	52.459	FBgn0033842	cbc	97	52.594	Drosophila_melanogaster
ENSSFOG00015000628	clp1	96	79.294	ENSETEG00000003009	CLP1	97	79.294	Echinops_telfairi
ENSSFOG00015000628	clp1	96	67.606	ENSEBUG00000011648	clp1	97	67.606	Eptatretus_burgeri
ENSSFOG00015000628	clp1	96	79.294	ENSEASG00005002093	CLP1	97	79.294	Equus_asinus_asinus
ENSSFOG00015000628	clp1	96	79.294	ENSECAG00000011597	CLP1	97	79.294	Equus_caballus
ENSSFOG00015000628	clp1	96	78.824	ENSEEUG00000012771	CLP1	97	78.824	Erinaceus_europaeus
ENSSFOG00015000628	clp1	100	89.111	ENSELUG00000024048	clp1	100	89.111	Esox_lucius
ENSSFOG00015000628	clp1	97	78.873	ENSFCAG00000006633	CLP1	97	79.059	Felis_catus
ENSSFOG00015000628	clp1	99	77.803	ENSFALG00000011145	CLP1	97	79.059	Ficedula_albicollis
ENSSFOG00015000628	clp1	96	79.294	ENSFDAG00000000234	CLP1	97	79.294	Fukomys_damarensis
ENSSFOG00015000628	clp1	100	83.223	ENSFHEG00000014760	CLP1	100	83.223	Fundulus_heteroclitus
ENSSFOG00015000628	clp1	100	88.667	ENSGMOG00000019340	clp1	100	88.000	Gadus_morhua
ENSSFOG00015000628	clp1	99	77.346	ENSGALG00000007370	CLP1	97	78.588	Gallus_gallus
ENSSFOG00015000628	clp1	100	83.002	ENSGAFG00000003020	clp1	100	83.002	Gambusia_affinis
ENSSFOG00015000628	clp1	100	84.989	ENSGACG00000017832	clp1	100	84.547	Gasterosteus_aculeatus
ENSSFOG00015000628	clp1	98	77.880	ENSGAGG00000013279	CLP1	97	79.059	Gopherus_agassizii
ENSSFOG00015000628	clp1	96	79.294	ENSGGOG00000023006	CLP1	97	79.294	Gorilla_gorilla
ENSSFOG00015000628	clp1	100	84.989	ENSHBUG00000010436	clp1	100	84.106	Haplochromis_burtoni
ENSSFOG00015000628	clp1	96	79.294	ENSHGLG00000009914	CLP1	97	79.294	Heterocephalus_glaber_female
ENSSFOG00015000628	clp1	96	79.294	ENSHGLG00100006105	CLP1	97	79.294	Heterocephalus_glaber_male
ENSSFOG00015000628	clp1	100	85.430	ENSHCOG00000010072	clp1	100	85.210	Hippocampus_comes
ENSSFOG00015000628	clp1	100	88.914	ENSIPUG00000016238	clp1	99	88.692	Ictalurus_punctatus
ENSSFOG00015000628	clp1	96	79.059	ENSSTOG00000029257	CLP1	97	79.059	Ictidomys_tridecemlineatus
ENSSFOG00015000628	clp1	96	79.059	ENSJJAG00000023691	Clp1	97	79.059	Jaculus_jaculus
ENSSFOG00015000628	clp1	100	83.885	ENSKMAG00000011990	clp1	100	83.885	Kryptolebias_marmoratus
ENSSFOG00015000628	clp1	100	85.210	ENSLBEG00000010201	clp1	100	84.547	Labrus_bergylta
ENSSFOG00015000628	clp1	96	79.059	ENSLACG00000003160	CLP1	97	79.059	Latimeria_chalumnae
ENSSFOG00015000628	clp1	73	90.712	ENSLOCG00000008074	clp1	100	91.667	Lepisosteus_oculatus
ENSSFOG00015000628	clp1	96	79.059	ENSLAFG00000014907	CLP1	97	79.059	Loxodonta_africana
ENSSFOG00015000628	clp1	96	79.294	ENSMFAG00000046074	CLP1	97	79.294	Macaca_fascicularis
ENSSFOG00015000628	clp1	96	79.294	ENSMMUG00000038007	CLP1	96	79.294	Macaca_mulatta
ENSSFOG00015000628	clp1	96	79.294	ENSMNEG00000000259	CLP1	97	79.294	Macaca_nemestrina
ENSSFOG00015000628	clp1	96	79.294	ENSMLEG00000043556	CLP1	97	79.294	Mandrillus_leucophaeus
ENSSFOG00015000628	clp1	100	86.036	ENSMAMG00000002149	clp1	100	84.989	Mastacembelus_armatus
ENSSFOG00015000628	clp1	100	84.768	ENSMZEG00005002850	clp1	100	83.885	Maylandia_zebra
ENSSFOG00015000628	clp1	99	77.346	ENSMGAG00000009643	CLP1	97	78.588	Meleagris_gallopavo
ENSSFOG00015000628	clp1	96	78.588	ENSMAUG00000016261	Clp1	97	78.588	Mesocricetus_auratus
ENSSFOG00015000628	clp1	96	79.059	ENSMICG00000004895	CLP1	97	79.059	Microcebus_murinus
ENSSFOG00015000628	clp1	96	79.059	ENSMOCG00000005498	Clp1	97	79.059	Microtus_ochrogaster
ENSSFOG00015000628	clp1	100	84.106	ENSMMOG00000003229	clp1	100	84.106	Mola_mola
ENSSFOG00015000628	clp1	96	79.059	ENSMODG00000024148	-	97	79.059	Monodelphis_domestica
ENSSFOG00015000628	clp1	96	79.059	ENSMODG00000020107	-	97	79.059	Monodelphis_domestica
ENSSFOG00015000628	clp1	100	84.910	ENSMALG00000014239	clp1	100	84.106	Monopterus_albus
ENSSFOG00015000628	clp1	96	78.824	MGP_CAROLIEiJ_G0023726	Clp1	97	78.824	Mus_caroli
ENSSFOG00015000628	clp1	96	78.824	ENSMUSG00000027079	Clp1	97	78.824	Mus_musculus
ENSSFOG00015000628	clp1	96	78.824	MGP_PahariEiJ_G0025177	Clp1	97	78.824	Mus_pahari
ENSSFOG00015000628	clp1	96	78.824	MGP_SPRETEiJ_G0024646	Clp1	97	78.824	Mus_spretus
ENSSFOG00015000628	clp1	96	79.059	ENSMPUG00000000268	CLP1	97	79.059	Mustela_putorius_furo
ENSSFOG00015000628	clp1	96	79.529	ENSMLUG00000007904	CLP1	97	79.529	Myotis_lucifugus
ENSSFOG00015000628	clp1	96	79.059	ENSNGAG00000006165	Clp1	97	79.059	Nannospalax_galili
ENSSFOG00015000628	clp1	100	84.768	ENSNBRG00000005225	clp1	100	83.885	Neolamprologus_brichardi
ENSSFOG00015000628	clp1	78	77.108	ENSNLEG00000012809	-	96	77.108	Nomascus_leucogenys
ENSSFOG00015000628	clp1	96	78.824	ENSMEUG00000010949	CLP1	97	78.824	Notamacropus_eugenii
ENSSFOG00015000628	clp1	71	79.421	ENSOPRG00000007329	CLP1	100	79.421	Ochotona_princeps
ENSSFOG00015000628	clp1	96	79.294	ENSODEG00000011410	CLP1	97	79.294	Octodon_degus
ENSSFOG00015000628	clp1	100	84.768	ENSONIG00000005089	clp1	100	83.885	Oreochromis_niloticus
ENSSFOG00015000628	clp1	96	79.059	ENSOCUG00000007045	CLP1	97	79.059	Oryctolagus_cuniculus
ENSSFOG00015000628	clp1	99	83.973	ENSORLG00000003647	clp1	100	82.781	Oryzias_latipes
ENSSFOG00015000628	clp1	99	83.747	ENSORLG00020016676	clp1	100	82.561	Oryzias_latipes_hni
ENSSFOG00015000628	clp1	99	83.973	ENSORLG00015019484	clp1	100	82.781	Oryzias_latipes_hsok
ENSSFOG00015000628	clp1	100	83.223	ENSOMEG00000021303	clp1	100	83.223	Oryzias_melastigma
ENSSFOG00015000628	clp1	96	79.059	ENSOGAG00000004508	CLP1	97	79.059	Otolemur_garnettii
ENSSFOG00015000628	clp1	96	78.118	ENSOARG00000010145	CLP1	95	78.118	Ovis_aries
ENSSFOG00015000628	clp1	96	79.294	ENSPPAG00000041519	CLP1	97	79.294	Pan_paniscus
ENSSFOG00015000628	clp1	96	79.059	ENSPPRG00000006135	CLP1	97	79.059	Panthera_pardus
ENSSFOG00015000628	clp1	96	79.059	ENSPTIG00000015866	CLP1	97	79.059	Panthera_tigris_altaica
ENSSFOG00015000628	clp1	96	79.294	ENSPTRG00000047318	CLP1	97	79.294	Pan_troglodytes
ENSSFOG00015000628	clp1	96	79.294	ENSPANG00000017078	CLP1	94	79.294	Papio_anubis
ENSSFOG00015000628	clp1	100	93.111	ENSPKIG00000007697	clp1	100	93.111	Paramormyrops_kingsleyae
ENSSFOG00015000628	clp1	93	74.939	ENSPSIG00000005468	CLP1	97	76.119	Pelodiscus_sinensis
ENSSFOG00015000628	clp1	100	84.106	ENSPMGG00000012171	clp1	95	86.682	Periophthalmus_magnuspinnatus
ENSSFOG00015000628	clp1	96	79.059	ENSPEMG00000011213	-	97	79.059	Peromyscus_maniculatus_bairdii
ENSSFOG00015000628	clp1	96	69.014	ENSPMAG00000006707	clp1	97	69.014	Petromyzon_marinus
ENSSFOG00015000628	clp1	96	79.294	ENSPCIG00000011899	CLP1	97	79.294	Phascolarctos_cinereus
ENSSFOG00015000628	clp1	100	83.444	ENSPFOG00000008169	clp1	100	83.444	Poecilia_formosa
ENSSFOG00015000628	clp1	100	83.444	ENSPLAG00000022388	clp1	100	83.444	Poecilia_latipinna
ENSSFOG00015000628	clp1	100	83.444	ENSPMEG00000021088	clp1	100	83.444	Poecilia_mexicana
ENSSFOG00015000628	clp1	100	83.444	ENSPREG00000017802	clp1	100	83.444	Poecilia_reticulata
ENSSFOG00015000628	clp1	54	76.371	ENSPPYG00000003266	-	100	76.371	Pongo_abelii
ENSSFOG00015000628	clp1	96	79.059	ENSPCOG00000000360	CLP1	95	79.059	Propithecus_coquereli
ENSSFOG00015000628	clp1	96	79.059	ENSPVAG00000016270	CLP1	97	79.059	Pteropus_vampyrus
ENSSFOG00015000628	clp1	100	84.989	ENSPNYG00000017274	clp1	99	84.106	Pundamilia_nyererei
ENSSFOG00015000628	clp1	100	88.889	ENSPNAG00000026460	clp1	100	88.889	Pygocentrus_nattereri
ENSSFOG00015000628	clp1	96	78.824	ENSRNOG00000007416	Clp1	97	78.824	Rattus_norvegicus
ENSSFOG00015000628	clp1	96	79.294	ENSRBIG00000018191	CLP1	97	79.294	Rhinopithecus_bieti
ENSSFOG00015000628	clp1	96	79.294	ENSRROG00000039265	CLP1	97	79.294	Rhinopithecus_roxellana
ENSSFOG00015000628	clp1	96	79.294	ENSSBOG00000032517	-	97	79.294	Saimiri_boliviensis_boliviensis
ENSSFOG00015000628	clp1	95	63.962	ENSSBOG00000010558	-	93	63.962	Saimiri_boliviensis_boliviensis
ENSSFOG00015000628	clp1	96	79.059	ENSSHAG00000015695	CLP1	97	79.059	Sarcophilus_harrisii
ENSSFOG00015000628	clp1	100	84.989	ENSSMAG00000019423	clp1	99	84.547	Scophthalmus_maximus
ENSSFOG00015000628	clp1	100	86.093	ENSSDUG00000014495	clp1	100	85.651	Seriola_dumerili
ENSSFOG00015000628	clp1	100	85.872	ENSSLDG00000000937	clp1	100	85.430	Seriola_lalandi_dorsalis
ENSSFOG00015000628	clp1	54	76.271	ENSSARG00000002459	CLP1	100	76.271	Sorex_araneus
ENSSFOG00015000628	clp1	98	76.498	ENSSPUG00000016811	CLP1	97	77.647	Sphenodon_punctatus
ENSSFOG00015000628	clp1	100	85.210	ENSSPAG00000016052	clp1	100	84.547	Stegastes_partitus
ENSSFOG00015000628	clp1	96	79.059	ENSSSCG00000031442	CLP1	97	79.059	Sus_scrofa
ENSSFOG00015000628	clp1	99	77.803	ENSTGUG00000007002	CLP1	97	79.059	Taeniopygia_guttata
ENSSFOG00015000628	clp1	99	84.650	ENSTRUG00000012602	clp1	100	83.444	Takifugu_rubripes
ENSSFOG00015000628	clp1	100	83.223	ENSTNIG00000013125	clp1	100	82.561	Tetraodon_nigroviridis
ENSSFOG00015000628	clp1	96	78.824	ENSTBEG00000009975	CLP1	97	78.824	Tupaia_belangeri
ENSSFOG00015000628	clp1	96	78.824	ENSTTRG00000002096	CLP1	97	78.824	Tursiops_truncatus
ENSSFOG00015000628	clp1	96	79.059	ENSUAMG00000011388	CLP1	97	79.059	Ursus_americanus
ENSSFOG00015000628	clp1	96	79.059	ENSUMAG00000018317	CLP1	97	79.059	Ursus_maritimus
ENSSFOG00015000628	clp1	96	79.059	ENSVVUG00000017138	CLP1	94	79.059	Vulpes_vulpes
ENSSFOG00015000628	clp1	99	72.311	ENSXETG00000007088	clp1	95	74.353	Xenopus_tropicalis
ENSSFOG00015000628	clp1	100	83.223	ENSXCOG00000002287	clp1	100	83.223	Xiphophorus_couchianus
ENSSFOG00015000628	clp1	100	83.223	ENSXMAG00000009783	clp1	100	83.223	Xiphophorus_maculatus