EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSFOG00015000675 (Gene tree)
Gene ID: 108924532
Gene Symbol: rbfox1l
Alias: Fox-1|ZFmu1A11s|a2bp1l|hm:zeh0082|zeh0082
Full Name: RNA binding protein fox-1 homolog 1-like
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 11195 bases
Position: chrKV410779.1:1579853-1591047
Accession: 108924532
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015000946	Fox-1_C	PF12414.8	5.9e-35	1	1
ENSSFOP00015000931	Fox-1_C	PF12414.8	1.2e-34	1	1
ENSSFOP00015000943	Fox-1_C	PF12414.8	3.4e-25	1	1
ENSSFOP00015000943	RRM_1	PF00076.22	3.9e-18	1	1
ENSSFOP00015000946	RRM_1	PF00076.22	4.1e-18	1	1
ENSSFOP00015000931	RRM_1	PF00076.22	4.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015000962	-	3153	XM_018735987	ENSSFOP00015000931	381 (aa)	XP_018591503	A0A1W4YSY5
ENSSFOT00015000977	-	2886	XM_018735995	ENSSFOP00015000946	369 (aa)	XP_018591511	A0A1W4YT88
ENSSFOT00015000974	-	1134	-	ENSSFOP00015000943	377 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015000675's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015000675's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSFOG00015000675	rbfox1l	84	46.087	ENSSFOG00015023675	rbfox1	89	46.176
ENSSFOG00015000675	rbfox1l	79	55.150	ENSSFOG00015004716	RBFOX3	84	57.003
ENSSFOG00015000675	rbfox1l	84	62.187	ENSSFOG00015023260	rbfox3a	84	62.840
ENSSFOG00015000675	rbfox1l	78	57.944	ENSSFOG00015010482	-	70	61.364
ENSSFOG00015000675	rbfox1l	63	66.383	ENSSFOG00015009955	-	56	66.087

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015000675	rbfox1l	97	82.306	ENSAPOG00000016304	rbfox1l	98	80.965	Acanthochromis_polyacanthus
ENSSFOG00015000675	rbfox1l	100	79.790	ENSACIG00000006441	rbfox1l	100	79.790	Amphilophus_citrinellus
ENSSFOG00015000675	rbfox1l	88	77.876	ENSAOCG00000020938	rbfox1l	96	75.229	Amphiprion_ocellaris
ENSSFOG00015000675	rbfox1l	100	81.558	ENSAPEG00000008232	rbfox1l	100	81.039	Amphiprion_percula
ENSSFOG00015000675	rbfox1l	100	82.415	ENSATEG00000022649	rbfox1l	100	79.845	Anabas_testudineus
ENSSFOG00015000675	rbfox1l	66	74.800	ENSACAG00000011931	-	89	75.918	Anolis_carolinensis
ENSSFOG00015000675	rbfox1l	100	82.857	ENSACLG00000021394	rbfox1l	100	82.597	Astatotilapia_calliptera
ENSSFOG00015000675	rbfox1l	100	88.743	ENSAMXG00000010470	rbfox1l	100	88.220	Astyanax_mexicanus
ENSSFOG00015000675	rbfox1l	100	56.736	ENSCPBG00000010944	-	100	57.545	Chrysemys_picta_bellii
ENSSFOG00015000675	rbfox1l	100	85.827	ENSCSEG00000018898	rbfox1l	100	86.089	Cynoglossus_semilaevis
ENSSFOG00015000675	rbfox1l	100	82.078	ENSCVAG00000007986	rbfox1l	100	80.260	Cyprinodon_variegatus
ENSSFOG00015000675	rbfox1l	100	88.482	ENSDARG00000021184	rbfox1l	100	87.958	Danio_rerio
ENSSFOG00015000675	rbfox1l	100	81.980	ENSELUG00000015077	rbfox1l	100	81.726	Esox_lucius
ENSSFOG00015000675	rbfox1l	74	95.122	ENSFHEG00000016557	rbfox1l	95	95.122	Fundulus_heteroclitus
ENSSFOG00015000675	rbfox1l	100	80.779	ENSGMOG00000005040	rbfox1l	100	80.000	Gadus_morhua
ENSSFOG00015000675	rbfox1l	99	79.189	ENSGAFG00000013211	rbfox1l	100	77.838	Gambusia_affinis
ENSSFOG00015000675	rbfox1l	100	82.338	ENSGACG00000010757	rbfox1l	100	81.818	Gasterosteus_aculeatus
ENSSFOG00015000675	rbfox1l	66	72.358	ENSGAGG00000012440	-	84	74.380	Gopherus_agassizii
ENSSFOG00015000675	rbfox1l	100	82.857	ENSHBUG00000013406	rbfox1l	100	82.597	Haplochromis_burtoni
ENSSFOG00015000675	rbfox1l	100	83.117	ENSHCOG00000020771	rbfox1l	100	83.117	Hippocampus_comes
ENSSFOG00015000675	rbfox1l	99	80.952	ENSIPUG00000000065	rbfox1l	99	80.791	Ictalurus_punctatus
ENSSFOG00015000675	rbfox1l	100	82.383	ENSKMAG00000005146	rbfox1l	100	82.124	Kryptolebias_marmoratus
ENSSFOG00015000675	rbfox1l	100	82.597	ENSLBEG00000017089	rbfox1l	100	84.156	Labrus_bergylta
ENSSFOG00015000675	rbfox1l	100	82.597	ENSMAMG00000019480	rbfox1l	100	83.636	Mastacembelus_armatus
ENSSFOG00015000675	rbfox1l	100	82.857	ENSMZEG00005016374	rbfox1l	100	82.597	Maylandia_zebra
ENSSFOG00015000675	rbfox1l	100	83.990	ENSMMOG00000016530	rbfox1l	100	83.727	Mola_mola
ENSSFOG00015000675	rbfox1l	100	82.677	ENSMALG00000009384	rbfox1l	100	82.152	Monopterus_albus
ENSSFOG00015000675	rbfox1l	100	84.293	ENSNBRG00000003346	rbfox1l	100	84.031	Neolamprologus_brichardi
ENSSFOG00015000675	rbfox1l	100	83.377	ENSONIG00000012754	rbfox1l	100	83.117	Oreochromis_niloticus
ENSSFOG00015000675	rbfox1l	100	82.597	ENSORLG00000011269	rbfox1l	100	79.221	Oryzias_latipes
ENSSFOG00015000675	rbfox1l	100	82.857	ENSORLG00020000162	rbfox1l	100	81.558	Oryzias_latipes_hni
ENSSFOG00015000675	rbfox1l	100	82.857	ENSORLG00015013464	rbfox1l	100	81.558	Oryzias_latipes_hsok
ENSSFOG00015000675	rbfox1l	100	82.338	ENSOMEG00000010584	rbfox1l	100	81.039	Oryzias_melastigma
ENSSFOG00015000675	rbfox1l	100	90.289	ENSPKIG00000012029	rbfox1l	100	90.026	Paramormyrops_kingsleyae
ENSSFOG00015000675	rbfox1l	100	77.953	ENSPMGG00000012082	rbfox1l	100	77.165	Periophthalmus_magnuspinnatus
ENSSFOG00015000675	rbfox1l	100	83.117	ENSPFOG00000009338	rbfox1l	100	81.818	Poecilia_formosa
ENSSFOG00015000675	rbfox1l	88	73.556	ENSPLAG00000012816	rbfox1l	99	73.556	Poecilia_latipinna
ENSSFOG00015000675	rbfox1l	100	78.961	ENSPMEG00000017597	rbfox1l	100	78.182	Poecilia_mexicana
ENSSFOG00015000675	rbfox1l	100	78.961	ENSPREG00000007940	rbfox1l	100	76.623	Poecilia_reticulata
ENSSFOG00015000675	rbfox1l	100	82.597	ENSPNYG00000002098	rbfox1l	100	82.338	Pundamilia_nyererei
ENSSFOG00015000675	rbfox1l	100	85.901	ENSPNAG00000001620	rbfox1l	100	84.595	Pygocentrus_nattereri
ENSSFOG00015000675	rbfox1l	100	82.857	ENSSMAG00000013090	rbfox1l	100	82.078	Scophthalmus_maximus
ENSSFOG00015000675	rbfox1l	100	81.347	ENSSDUG00000008705	rbfox1l	100	81.088	Seriola_dumerili
ENSSFOG00015000675	rbfox1l	100	81.347	ENSSLDG00000022256	rbfox1l	100	81.088	Seriola_lalandi_dorsalis
ENSSFOG00015000675	rbfox1l	100	81.558	ENSSPAG00000016620	rbfox1l	100	81.039	Stegastes_partitus
ENSSFOG00015000675	rbfox1l	96	79.891	ENSTRUG00000015905	rbfox1l	100	79.620	Takifugu_rubripes
ENSSFOG00015000675	rbfox1l	66	80.755	ENSTNIG00000008088	rbfox1l	98	83.525	Tetraodon_nigroviridis
ENSSFOG00015000675	rbfox1l	100	81.039	ENSXMAG00000023471	rbfox1l	100	81.039	Xiphophorus_maculatus