EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSFOG00015001091 (Gene tree)
Gene ID: 108929366
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Scleropages_formosus
Status: putative
Strand: Plus strand
Length: 23356 bases
Position: chrKV410896.1:2782514-2805869
Accession: 108929366
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSFOP00015001747	XRN_N	PF03159.18	2.6e-102	1	1
ENSSFOP00015001708	XRN_N	PF03159.18	3e-102	1	1
ENSSFOP00015001735	XRN_N	PF03159.18	3e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSFOT00015001747	-	4619	XM_018743830	ENSSFOP00015001708	961 (aa)	XP_018599346	A0A1W4ZFP6
ENSSFOT00015001774	-	4080	-	ENSSFOP00015001735	961 (aa)	-	A0A1W4ZFP6
ENSSFOT00015001786	-	2571	-	ENSSFOP00015001747	856 (aa)	-	-

Gene Model

Click here to download ENSSFOG00015001091's gene model file

Pathways

Pathway ID	Pathway Name	Source
sfm03008	Ribosome biogenesis in eukaryotes	KEGG
sfm03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSFOG00015001091's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSFOG00015001091	xrn2	100	71.827	ENSG00000088930	XRN2	100	71.827	Homo_sapiens
ENSSFOG00015001091	xrn2	98	80.947	ENSAPOG00000009818	xrn2	100	79.433	Acanthochromis_polyacanthus
ENSSFOG00015001091	xrn2	100	72.033	ENSAMEG00000012581	XRN2	100	72.033	Ailuropoda_melanoleuca
ENSSFOG00015001091	xrn2	90	78.702	ENSACIG00000015047	xrn2	95	83.840	Amphilophus_citrinellus
ENSSFOG00015001091	xrn2	98	80.190	ENSAOCG00000023632	xrn2	100	79.001	Amphiprion_ocellaris
ENSSFOG00015001091	xrn2	98	80.105	ENSAPEG00000014871	xrn2	100	78.622	Amphiprion_percula
ENSSFOG00015001091	xrn2	96	82.270	ENSATEG00000001273	xrn2	98	81.007	Anabas_testudineus
ENSSFOG00015001091	xrn2	98	72.698	ENSAPLG00000013869	XRN2	100	72.698	Anas_platyrhynchos
ENSSFOG00015001091	xrn2	100	70.961	ENSACAG00000005565	XRN2	100	70.961	Anolis_carolinensis
ENSSFOG00015001091	xrn2	100	71.827	ENSANAG00000020126	XRN2	100	71.827	Aotus_nancymaae
ENSSFOG00015001091	xrn2	90	81.787	ENSACLG00000010522	xrn2	97	81.787	Astatotilapia_calliptera
ENSSFOG00015001091	xrn2	100	81.045	ENSAMXG00000018301	xrn2	100	81.045	Astyanax_mexicanus
ENSSFOG00015001091	xrn2	100	71.311	ENSBTAG00000011304	XRN2	100	71.311	Bos_taurus
ENSSFOG00015001091	xrn2	86	54.482	WBGene00006964	xrn-2	90	53.073	Caenorhabditis_elegans
ENSSFOG00015001091	xrn2	100	71.827	ENSCJAG00000005611	XRN2	100	71.827	Callithrix_jacchus
ENSSFOG00015001091	xrn2	100	72.033	ENSCAFG00000005185	XRN2	100	72.033	Canis_familiaris
ENSSFOG00015001091	xrn2	100	72.033	ENSCAFG00020027479	XRN2	100	72.033	Canis_lupus_dingo
ENSSFOG00015001091	xrn2	100	71.207	ENSCHIG00000006921	XRN2	100	71.207	Capra_hircus
ENSSFOG00015001091	xrn2	100	71.546	ENSTSYG00000008315	XRN2	100	71.546	Carlito_syrichta
ENSSFOG00015001091	xrn2	97	61.229	ENSCAPG00000010773	XRN2	99	61.229	Cavia_aperea
ENSSFOG00015001091	xrn2	100	72.239	ENSCPOG00000009407	XRN2	100	72.239	Cavia_porcellus
ENSSFOG00015001091	xrn2	100	71.723	ENSCATG00000040350	XRN2	100	71.723	Cercocebus_atys
ENSSFOG00015001091	xrn2	100	72.016	ENSCLAG00000013419	XRN2	100	72.016	Chinchilla_lanigera
ENSSFOG00015001091	xrn2	100	71.723	ENSCSAG00000011094	XRN2	100	71.723	Chlorocebus_sabaeus
ENSSFOG00015001091	xrn2	67	89.247	ENSCHOG00000013404	XRN2	69	89.247	Choloepus_hoffmanni
ENSSFOG00015001091	xrn2	100	72.718	ENSCPBG00000023533	XRN2	100	72.848	Chrysemys_picta_bellii
ENSSFOG00015001091	xrn2	86	60.710	ENSCING00000022336	-	100	61.065	Ciona_intestinalis
ENSSFOG00015001091	xrn2	94	54.861	ENSCSAVG00000011217	-	100	63.301	Ciona_savignyi
ENSSFOG00015001091	xrn2	100	71.723	ENSCANG00000040240	XRN2	100	71.723	Colobus_angolensis_palliatus
ENSSFOG00015001091	xrn2	98	72.421	ENSCGRG00001010676	Xrn2	100	72.842	Cricetulus_griseus_chok1gshd
ENSSFOG00015001091	xrn2	97	71.081	ENSCGRG00000006378	Xrn2	99	71.504	Cricetulus_griseus_crigri
ENSSFOG00015001091	xrn2	57	77.291	ENSCSEG00000005628	xrn2	100	77.092	Cynoglossus_semilaevis
ENSSFOG00015001091	xrn2	90	79.793	ENSCVAG00000018999	xrn2	98	86.998	Cyprinodon_variegatus
ENSSFOG00015001091	xrn2	100	79.179	ENSDARG00000101900	xrn2	96	87.954	Danio_rerio
ENSSFOG00015001091	xrn2	100	72.343	ENSDNOG00000001895	XRN2	100	72.343	Dasypus_novemcinctus
ENSSFOG00015001091	xrn2	100	70.661	ENSDORG00000005434	Xrn2	100	70.661	Dipodomys_ordii
ENSSFOG00015001091	xrn2	89	53.656	FBgn0031868	Rat1	91	53.642	Drosophila_melanogaster
ENSSFOG00015001091	xrn2	91	81.022	ENSETEG00000001740	XRN2	92	81.022	Echinops_telfairi
ENSSFOG00015001091	xrn2	84	69.915	ENSEBUG00000016136	xrn2	100	69.915	Eptatretus_burgeri
ENSSFOG00015001091	xrn2	100	72.004	ENSEASG00005002484	XRN2	100	72.004	Equus_asinus_asinus
ENSSFOG00015001091	xrn2	94	88.462	ENSECAG00000018988	XRN2	96	88.462	Equus_caballus
ENSSFOG00015001091	xrn2	67	92.000	ENSEEUG00000009265	XRN2	67	92.000	Erinaceus_europaeus
ENSSFOG00015001091	xrn2	99	79.656	ENSELUG00000000552	xrn2	99	80.162	Esox_lucius
ENSSFOG00015001091	xrn2	100	71.930	ENSFCAG00000007970	XRN2	100	71.930	Felis_catus
ENSSFOG00015001091	xrn2	100	72.727	ENSFALG00000004508	XRN2	100	72.727	Ficedula_albicollis
ENSSFOG00015001091	xrn2	100	71.930	ENSFDAG00000016311	XRN2	100	71.930	Fukomys_damarensis
ENSSFOG00015001091	xrn2	54	79.502	ENSFHEG00000013039	xrn2	98	79.502	Fundulus_heteroclitus
ENSSFOG00015001091	xrn2	89	78.052	ENSGMOG00000013436	xrn2	100	80.649	Gadus_morhua
ENSSFOG00015001091	xrn2	100	72.652	ENSGALG00000008372	XRN2	100	72.652	Gallus_gallus
ENSSFOG00015001091	xrn2	89	82.944	ENSGAFG00000014284	xrn2	98	82.944	Gambusia_affinis
ENSSFOG00015001091	xrn2	90	78.431	ENSGACG00000011870	xrn2	96	87.115	Gasterosteus_aculeatus
ENSSFOG00015001091	xrn2	100	73.026	ENSGAGG00000004884	XRN2	100	73.231	Gopherus_agassizii
ENSSFOG00015001091	xrn2	100	71.723	ENSGGOG00000013738	XRN2	100	71.723	Gorilla_gorilla
ENSSFOG00015001091	xrn2	54	83.174	ENSHBUG00000005077	xrn2	94	83.174	Haplochromis_burtoni
ENSSFOG00015001091	xrn2	100	71.104	ENSHGLG00000014831	XRN2	100	71.001	Heterocephalus_glaber_female
ENSSFOG00015001091	xrn2	100	71.104	ENSHGLG00100013130	XRN2	100	71.001	Heterocephalus_glaber_male
ENSSFOG00015001091	xrn2	99	74.622	ENSHCOG00000011994	xrn2	99	74.924	Hippocampus_comes
ENSSFOG00015001091	xrn2	100	78.138	ENSIPUG00000006639	xrn2	100	78.138	Ictalurus_punctatus
ENSSFOG00015001091	xrn2	100	72.136	ENSSTOG00000000589	XRN2	100	72.136	Ictidomys_tridecemlineatus
ENSSFOG00015001091	xrn2	100	72.343	ENSJJAG00000022128	Xrn2	100	72.343	Jaculus_jaculus
ENSSFOG00015001091	xrn2	57	87.078	ENSLBEG00000010041	xrn2	100	87.078	Labrus_bergylta
ENSSFOG00015001091	xrn2	94	72.905	ENSLACG00000008307	XRN2	97	77.586	Latimeria_chalumnae
ENSSFOG00015001091	xrn2	99	77.353	ENSLOCG00000016874	xrn2	93	85.390	Lepisosteus_oculatus
ENSSFOG00015001091	xrn2	100	71.930	ENSLAFG00000014624	XRN2	100	71.930	Loxodonta_africana
ENSSFOG00015001091	xrn2	100	71.723	ENSMFAG00000038122	XRN2	100	71.723	Macaca_fascicularis
ENSSFOG00015001091	xrn2	100	71.723	ENSMMUG00000011405	XRN2	100	71.723	Macaca_mulatta
ENSSFOG00015001091	xrn2	100	71.620	ENSMNEG00000040626	XRN2	100	71.620	Macaca_nemestrina
ENSSFOG00015001091	xrn2	100	71.620	ENSMLEG00000041897	XRN2	100	71.620	Mandrillus_leucophaeus
ENSSFOG00015001091	xrn2	96	82.124	ENSMAMG00000008633	xrn2	95	82.043	Mastacembelus_armatus
ENSSFOG00015001091	xrn2	90	83.643	ENSMZEG00005022362	xrn2	97	83.643	Maylandia_zebra
ENSSFOG00015001091	xrn2	99	71.253	ENSMGAG00000003196	XRN2	99	71.253	Meleagris_gallopavo
ENSSFOG00015001091	xrn2	100	72.314	ENSMAUG00000021842	Xrn2	100	72.314	Mesocricetus_auratus
ENSSFOG00015001091	xrn2	100	71.694	ENSMICG00000008126	XRN2	100	71.694	Microcebus_murinus
ENSSFOG00015001091	xrn2	100	71.798	ENSMOCG00000012588	Xrn2	100	71.901	Microtus_ochrogaster
ENSSFOG00015001091	xrn2	90	83.201	ENSMMOG00000017576	xrn2	96	85.305	Mola_mola
ENSSFOG00015001091	xrn2	100	72.878	ENSMODG00000006163	XRN2	100	72.878	Monodelphis_domestica
ENSSFOG00015001091	xrn2	90	82.609	ENSMALG00000011355	xrn2	95	86.948	Monopterus_albus
ENSSFOG00015001091	xrn2	100	71.930	MGP_CAROLIEiJ_G0024400	Xrn2	100	71.930	Mus_caroli
ENSSFOG00015001091	xrn2	100	72.033	ENSMUSG00000027433	Xrn2	100	72.033	Mus_musculus
ENSSFOG00015001091	xrn2	100	72.033	MGP_PahariEiJ_G0025843	Xrn2	100	72.033	Mus_pahari
ENSSFOG00015001091	xrn2	100	72.033	MGP_SPRETEiJ_G0025318	Xrn2	100	72.033	Mus_spretus
ENSSFOG00015001091	xrn2	100	70.791	ENSMPUG00000001198	XRN2	93	70.791	Mustela_putorius_furo
ENSSFOG00015001091	xrn2	100	71.591	ENSMLUG00000001536	XRN2	100	71.591	Myotis_lucifugus
ENSSFOG00015001091	xrn2	100	72.239	ENSNGAG00000018138	Xrn2	100	72.239	Nannospalax_galili
ENSSFOG00015001091	xrn2	90	84.223	ENSNBRG00000008062	xrn2	97	84.223	Neolamprologus_brichardi
ENSSFOG00015001091	xrn2	100	71.723	ENSNLEG00000009991	XRN2	100	71.723	Nomascus_leucogenys
ENSSFOG00015001091	xrn2	51	88.889	ENSMEUG00000008622	-	53	88.889	Notamacropus_eugenii
ENSSFOG00015001091	xrn2	62	73.684	ENSOPRG00000001397	-	63	73.684	Ochotona_princeps
ENSSFOG00015001091	xrn2	100	71.930	ENSODEG00000010745	-	100	71.930	Octodon_degus
ENSSFOG00015001091	xrn2	98	66.348	ENSODEG00000000860	-	99	66.242	Octodon_degus
ENSSFOG00015001091	xrn2	100	76.606	ENSONIG00000018720	xrn2	100	76.531	Oreochromis_niloticus
ENSSFOG00015001091	xrn2	100	71.385	ENSOANG00000015673	XRN2	100	71.385	Ornithorhynchus_anatinus
ENSSFOG00015001091	xrn2	100	72.033	ENSOCUG00000013468	XRN2	100	72.033	Oryctolagus_cuniculus
ENSSFOG00015001091	xrn2	96	79.763	ENSORLG00000017213	xrn2	97	82.679	Oryzias_latipes
ENSSFOG00015001091	xrn2	98	77.975	ENSORLG00020001824	xrn2	100	77.618	Oryzias_latipes_hni
ENSSFOG00015001091	xrn2	98	77.396	ENSORLG00015019747	xrn2	100	77.049	Oryzias_latipes_hsok
ENSSFOG00015001091	xrn2	99	78.082	ENSOMEG00000019820	xrn2	100	76.697	Oryzias_melastigma
ENSSFOG00015001091	xrn2	100	72.325	ENSOGAG00000001068	XRN2	100	72.325	Otolemur_garnettii
ENSSFOG00015001091	xrn2	97	70.732	ENSOARG00000004443	XRN2	99	70.732	Ovis_aries
ENSSFOG00015001091	xrn2	100	71.723	ENSPPAG00000033549	XRN2	100	71.723	Pan_paniscus
ENSSFOG00015001091	xrn2	100	71.930	ENSPPRG00000008732	XRN2	100	71.930	Panthera_pardus
ENSSFOG00015001091	xrn2	97	71.474	ENSPTIG00000015683	XRN2	97	71.474	Panthera_tigris_altaica
ENSSFOG00015001091	xrn2	100	71.723	ENSPTRG00000013308	XRN2	100	71.723	Pan_troglodytes
ENSSFOG00015001091	xrn2	100	71.723	ENSPANG00000018088	XRN2	100	71.723	Papio_anubis
ENSSFOG00015001091	xrn2	100	83.759	ENSPKIG00000016889	xrn2	100	84.065	Paramormyrops_kingsleyae
ENSSFOG00015001091	xrn2	80	77.249	ENSPSIG00000014666	XRN2	99	77.249	Pelodiscus_sinensis
ENSSFOG00015001091	xrn2	100	72.033	ENSPEMG00000000111	Xrn2	100	72.033	Peromyscus_maniculatus_bairdii
ENSSFOG00015001091	xrn2	100	75.996	ENSPFOG00000004182	xrn2	99	76.429	Poecilia_formosa
ENSSFOG00015001091	xrn2	89	82.827	ENSPLAG00000007351	xrn2	96	82.827	Poecilia_latipinna
ENSSFOG00015001091	xrn2	94	74.811	ENSPMEG00000011798	xrn2	99	75.270	Poecilia_mexicana
ENSSFOG00015001091	xrn2	90	82.197	ENSPREG00000012452	xrn2	99	80.311	Poecilia_reticulata
ENSSFOG00015001091	xrn2	100	71.311	ENSPPYG00000010755	XRN2	100	71.311	Pongo_abelii
ENSSFOG00015001091	xrn2	100	67.765	ENSPCAG00000011191	XRN2	100	67.765	Procavia_capensis
ENSSFOG00015001091	xrn2	100	65.909	ENSPCOG00000016468	XRN2	100	65.909	Propithecus_coquereli
ENSSFOG00015001091	xrn2	93	65.719	ENSPVAG00000004596	XRN2	93	65.719	Pteropus_vampyrus
ENSSFOG00015001091	xrn2	90	81.787	ENSPNYG00000001765	xrn2	97	81.787	Pundamilia_nyererei
ENSSFOG00015001091	xrn2	99	80.326	ENSPNAG00000010956	xrn2	99	80.326	Pygocentrus_nattereri
ENSSFOG00015001091	xrn2	100	72.680	ENSRNOG00000011785	Xrn2	100	72.680	Rattus_norvegicus
ENSSFOG00015001091	xrn2	89	74.328	ENSRBIG00000036193	XRN2	100	77.108	Rhinopithecus_bieti
ENSSFOG00015001091	xrn2	100	71.723	ENSRROG00000044400	XRN2	90	71.723	Rhinopithecus_roxellana
ENSSFOG00015001091	xrn2	70	51.778	YOR048C	RAT1	63	53.623	Saccharomyces_cerevisiae
ENSSFOG00015001091	xrn2	100	71.827	ENSSBOG00000021014	XRN2	100	71.827	Saimiri_boliviensis_boliviensis
ENSSFOG00015001091	xrn2	89	83.991	ENSSMAG00000007834	xrn2	100	76.939	Scophthalmus_maximus
ENSSFOG00015001091	xrn2	96	79.677	ENSSDUG00000012802	xrn2	99	83.333	Seriola_dumerili
ENSSFOG00015001091	xrn2	93	83.408	ENSSLDG00000021273	xrn2	100	83.408	Seriola_lalandi_dorsalis
ENSSFOG00015001091	xrn2	60	92.000	ENSSARG00000005859	-	68	92.000	Sorex_araneus
ENSSFOG00015001091	xrn2	98	71.036	ENSSPUG00000005485	XRN2	95	70.842	Sphenodon_punctatus
ENSSFOG00015001091	xrn2	100	78.310	ENSSPAG00000016027	xrn2	99	78.411	Stegastes_partitus
ENSSFOG00015001091	xrn2	100	70.661	ENSSSCG00000007109	XRN2	100	70.661	Sus_scrofa
ENSSFOG00015001091	xrn2	100	71.649	ENSTGUG00000007535	XRN2	100	71.649	Taeniopygia_guttata
ENSSFOG00015001091	xrn2	100	74.802	ENSTRUG00000015489	xrn2	100	75.879	Takifugu_rubripes
ENSSFOG00015001091	xrn2	100	75.869	ENSTNIG00000010712	xrn2	100	75.869	Tetraodon_nigroviridis
ENSSFOG00015001091	xrn2	100	71.723	ENSTBEG00000004119	XRN2	100	71.723	Tupaia_belangeri
ENSSFOG00015001091	xrn2	93	77.778	ENSTTRG00000009087	XRN2	93	77.778	Tursiops_truncatus
ENSSFOG00015001091	xrn2	100	72.033	ENSUAMG00000024634	XRN2	98	78.993	Ursus_americanus
ENSSFOG00015001091	xrn2	97	71.474	ENSUMAG00000004012	XRN2	95	71.474	Ursus_maritimus
ENSSFOG00015001091	xrn2	81	83.819	ENSVPAG00000010694	XRN2	84	83.819	Vicugna_pacos
ENSSFOG00015001091	xrn2	100	72.033	ENSVVUG00000012178	XRN2	100	72.033	Vulpes_vulpes
ENSSFOG00015001091	xrn2	99	71.355	ENSXETG00000023501	xrn2	99	71.355	Xenopus_tropicalis
ENSSFOG00015001091	xrn2	100	75.792	ENSXMAG00000000242	xrn2	93	86.165	Xiphophorus_maculatus